Araştırma Makalesi
BibTex RIS Kaynak Göster
Yıl 2017, Cilt: 2 Sayı: 2, 85 - 99, 20.06.2017
https://doi.org/10.28978/nesciences.337793

Öz

Kaynakça

  • Aka, Z., Koc, H.T., Turan, C. 2004. A study of the growth of anchovy Engraulis encrasicolus Linaeus (1758) in Turkish Seas. Pakistan Journal of Biological Sciences, 1121-1126.
  • Bembo, D.G., Carvalho, G.R., Snow, M., Cingolani, N., Pitcher, T.J. (1995). Stock discrimination among European anchovies, Engraulis encrasicolus, by means of PCR-amplified mitochondrial DNA analysis. Fish. Bull, 94, 31–40.
  • Bembo, D.G., Carvalho, G.R., Cingolani, N., Arneri, E., Giannetti, G., Pitcher, T.J. (1996a). Allozymic and morphometric evidence for two stocks of the European anchovy Engraulis encrasicolus in Adriatic waters. Marine Biology, 126, 529-538.
  • Bembo, D.G., Carvalho, G.R., Cingolani, N., Pitcher, T.J. (1996b). Electrophoretic analysis of stock structure in northern Mediterranean anchovies, Engraulis encrasicolus. ICES Journal of Marine Science, 53: 115–128.
  • Borrell, Y.J., Piñera, J.A., Prado, A.S., Blanco, G. (2012). Mitochondrial DNA and microsatellite genetic differentiation in the European anchovy Engraulis encrasicolus L. ICES Journal of Marine Science, 69,1357–1371.
  • Borsa, P. (2002). Allozyme, mitochondrial-DNA, and morphometric variability indicate cryptic species of anchovy (Engraulis encrasicolus). Biological Journal of the Linnean Society, 75, 261–269.
  • Carvalho, G.R. & Hauser, L. (1998). Advances in the molecular analysis of fish population structure. Italian Journal of Zoology, 65, 21–33.
  • Cingolani, A.M., Renison, D., Zak, M.R., Cabido, M.R. (2004). Mapping vegetation in a heterogeneous mountain rangeland using landsat data: an alternative method to define and classify land-cover units. Remote Sens. Environ., 92, 84-97.
  • Erdogan, Z., Turan, C., Torcu-Koc, H. (2009). Morphologic and Allozyme analyses of European anchovy (Engraulis encrasicolus (L. 1758)) in the Black, Marmara and Aegean Seas. Acta Adriatica, 50: 77 – 90.
  • Erguden, D., Gurlek, M., Yaglioglu, D., Turan, C. (2010). Genetic Identification and Taxonomic Relationship of Mediterranean Mugilid Species Based on Mitochondrial 16S rDNA Sequence Data. Journal of Animal and Veterinary Advances, 9, 336-341.
  • Excoffier, L. & Lischer, H.E.L. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
  • Fischer, W., Bauchot, M.L., Schneider, M. (1987). Fiches FAO d'identification des espèces pour les besoins de la peche Mediterranée et mer Noire. Zone. de. Peche. 37, 761-1530.
  • Glover, K.A., Skaala, Ø., Limborg, M.,. Kvamme, C., Torstensen, E. (2011). Microsatellite DNA reveals population genetic differentiation among sprat (Sprattus sprattus) sampled throughout the Northeast Atlantic, including Norwegian fjords. ICES Journal of Marine Science, 68, 2145–2151.
  • Goudet, J. (2001). FStat, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). http://www2.unil.ch/popgen/softwares/fstat.htm. Grant, W.S. (2005). A second look at mitochondrial DNA variability in European anchovy (Engraulis encrasicolus): assessing models of population structure and the Black Sea isolation hypothesis. Genetica, 125, 293–309.
  • Guo, S.W. & Thompson, E.A. (1992). Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics, 48, 361–372.
  • Lamichhaney, S., Barrio, A.M., Rafati, N., Sundström, G., Rubin, C.J., Gilbert, E.R., Berglund, J., Wetterbom, A., Laikre, L., Webster, M.T., Grabherr, M., Ryman, N., Andersson, L. (2012).
  • Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring. Proceedings of the National Academy of Sciences U.S.A., 109, 19345–19350.
  • Landi, M., Garoia, F., Piccinetti, C., Tinti, F. ( 2005). Isolation of polymorphic microsatellite loci from the European anchovy, Engraulis encrasicolus. Molecular Ecology Notes, 5, 266–268.
  • Magoulas, A., Tsimenides, N., Zouros, E. (1996). Mitochondrial DNA phylogeny and the reconstruction of the population history of a species: the case of the European anchovy (Engraulis encrasicolus). Molecular Biology and Evolution, 13,178-190.
  • Magoulas, A., Castilho, R., Caetano, S., Marcato, S., Patarnello, T. (2006). Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus). Molecular Phylogenetics and Evolution, 39, 734–746.
  • Malone, T.W., Crowston, K., Lee, J., Pentland, B., Dellarocas, C., Wyner, G., Quimby, J., Osborn, C.S., Bernstein, A., Herman, G., Klein, M., O'donnell, E. (1999). Tools for inventing organizations: Toward a handbook of organizational processes. Management Science, 45, 425–443.
  • Miller M.P. (1997). Tools for population genetic analysis (TFPGA) 1.3: A Windows program for the analysis of allozyme and molecular population genetic data. (Computer software distributed by author).
  • Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583–590.
  • Pakaki, V., Magolulas, A., Kasapidis, P. (2009). New polymorphic microsatellite loci for population studies in the European anchovy, Engraulis encrasicolus (L.), Molecular Ecology Resources, 9, 1406–1409.
  • Pasteur, N. & Berrebi, P. (1985). Structure Génétique des Populations Naturelles d’Animaux Laguno-Marins sur des Bases de Génétique Biochimique et d’Ecologie (Contrat n° 83.J.0024 du Ministère de la Recherche, Direction du Développement Scientifique et Technologique et de l’Innovation). Montpellier, France: Université des Sciences et Techniques du Languedoc.
  • Peakall, R. & Smouse, P.E. (2012). GenAlEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics, 28, 2537–2539.
  • Shaw, P.W., Turan, C., Wright, J.M., O’connel, M., Carvalho, G.R. (1999). Microsatellite DNA analysis of population structure in Atlantic herring (Clupea harengus), with direct comparison to allozyme and mtDNA RFLP analyses. Heredity, 83, 490–499.
  • Tudela, S. (1999). Morphological variability in a Mediterranean, genetically homogeneous population of the European anchovy, Engraulis encrasicolus. Fisheries Research, 42, 229– 243.
  • Turan, C. (Ed.) (2007). Atlas and Systematics of Marine Bony Fishes of Turkey. 1st edition, Nobel Publishing House, Adana, Turkey.
  • Turan, C., Gurlek M., Erguden D., Basusta N., Turan, F. (2004). Morphometric Structuring of Anchovy (Engraulis encrasicolus L.) from the Black, Aegean and Northeastern Mediterranean Seas. Turkish Journal of Veterinary and Animal, 28, 865–871.
  • Turan, C., Gunduz, I, Gurlek, M., Yaglioglu, D., Erguden, D. 2009. Systematics of Scorpaenidae species in the Mediterranean Sea inferred from mitochondrial 16S rDNA sequence and morphological data. Folia Biologica, (Krakow) 57: 219-226.

Genetic Structure of Anchovy Engraulis encrasicolus in the Adriatic Sea using Microsatellite DNA Analysis

Yıl 2017, Cilt: 2 Sayı: 2, 85 - 99, 20.06.2017
https://doi.org/10.28978/nesciences.337793

Öz

Stock structure analysis of anchovy from the Rovinj, Maslenica and Island of Korčulain in the

Adriatic Sea was carried out by using 13 microsatellite loci. Overall, 259 alleles were detected in

13 loci, the number of alleles per locus and population ranged from 4 to 28. The allelic richness of

overall loci was found to be highest in the Rovinj population and lowest in the Island of Korčula

population. The highest and lowest value of population specific alleles was found in the Rovinj

population and Island of Korčula population, respectively. Observed heterozygosity per population

was ranged from 0.714 (Rovinj) to 0.678 (Maslenica). Pairwise FST values revealed that there is no

significant genetic differences between populations (P>0.05). However, the highest and lowest

genetic distance were found between the Rovinj and Maslenica populations (FST=0.00626) and

between the Island of Korčula and Maslenica populations, respectively. The UPGMA dendrogram

clustered the Maslenica and Island of Korčula populations together, and the Rovinj population was

a distinct cluster from these two.

Kaynakça

  • Aka, Z., Koc, H.T., Turan, C. 2004. A study of the growth of anchovy Engraulis encrasicolus Linaeus (1758) in Turkish Seas. Pakistan Journal of Biological Sciences, 1121-1126.
  • Bembo, D.G., Carvalho, G.R., Snow, M., Cingolani, N., Pitcher, T.J. (1995). Stock discrimination among European anchovies, Engraulis encrasicolus, by means of PCR-amplified mitochondrial DNA analysis. Fish. Bull, 94, 31–40.
  • Bembo, D.G., Carvalho, G.R., Cingolani, N., Arneri, E., Giannetti, G., Pitcher, T.J. (1996a). Allozymic and morphometric evidence for two stocks of the European anchovy Engraulis encrasicolus in Adriatic waters. Marine Biology, 126, 529-538.
  • Bembo, D.G., Carvalho, G.R., Cingolani, N., Pitcher, T.J. (1996b). Electrophoretic analysis of stock structure in northern Mediterranean anchovies, Engraulis encrasicolus. ICES Journal of Marine Science, 53: 115–128.
  • Borrell, Y.J., Piñera, J.A., Prado, A.S., Blanco, G. (2012). Mitochondrial DNA and microsatellite genetic differentiation in the European anchovy Engraulis encrasicolus L. ICES Journal of Marine Science, 69,1357–1371.
  • Borsa, P. (2002). Allozyme, mitochondrial-DNA, and morphometric variability indicate cryptic species of anchovy (Engraulis encrasicolus). Biological Journal of the Linnean Society, 75, 261–269.
  • Carvalho, G.R. & Hauser, L. (1998). Advances in the molecular analysis of fish population structure. Italian Journal of Zoology, 65, 21–33.
  • Cingolani, A.M., Renison, D., Zak, M.R., Cabido, M.R. (2004). Mapping vegetation in a heterogeneous mountain rangeland using landsat data: an alternative method to define and classify land-cover units. Remote Sens. Environ., 92, 84-97.
  • Erdogan, Z., Turan, C., Torcu-Koc, H. (2009). Morphologic and Allozyme analyses of European anchovy (Engraulis encrasicolus (L. 1758)) in the Black, Marmara and Aegean Seas. Acta Adriatica, 50: 77 – 90.
  • Erguden, D., Gurlek, M., Yaglioglu, D., Turan, C. (2010). Genetic Identification and Taxonomic Relationship of Mediterranean Mugilid Species Based on Mitochondrial 16S rDNA Sequence Data. Journal of Animal and Veterinary Advances, 9, 336-341.
  • Excoffier, L. & Lischer, H.E.L. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
  • Fischer, W., Bauchot, M.L., Schneider, M. (1987). Fiches FAO d'identification des espèces pour les besoins de la peche Mediterranée et mer Noire. Zone. de. Peche. 37, 761-1530.
  • Glover, K.A., Skaala, Ø., Limborg, M.,. Kvamme, C., Torstensen, E. (2011). Microsatellite DNA reveals population genetic differentiation among sprat (Sprattus sprattus) sampled throughout the Northeast Atlantic, including Norwegian fjords. ICES Journal of Marine Science, 68, 2145–2151.
  • Goudet, J. (2001). FStat, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). http://www2.unil.ch/popgen/softwares/fstat.htm. Grant, W.S. (2005). A second look at mitochondrial DNA variability in European anchovy (Engraulis encrasicolus): assessing models of population structure and the Black Sea isolation hypothesis. Genetica, 125, 293–309.
  • Guo, S.W. & Thompson, E.A. (1992). Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics, 48, 361–372.
  • Lamichhaney, S., Barrio, A.M., Rafati, N., Sundström, G., Rubin, C.J., Gilbert, E.R., Berglund, J., Wetterbom, A., Laikre, L., Webster, M.T., Grabherr, M., Ryman, N., Andersson, L. (2012).
  • Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring. Proceedings of the National Academy of Sciences U.S.A., 109, 19345–19350.
  • Landi, M., Garoia, F., Piccinetti, C., Tinti, F. ( 2005). Isolation of polymorphic microsatellite loci from the European anchovy, Engraulis encrasicolus. Molecular Ecology Notes, 5, 266–268.
  • Magoulas, A., Tsimenides, N., Zouros, E. (1996). Mitochondrial DNA phylogeny and the reconstruction of the population history of a species: the case of the European anchovy (Engraulis encrasicolus). Molecular Biology and Evolution, 13,178-190.
  • Magoulas, A., Castilho, R., Caetano, S., Marcato, S., Patarnello, T. (2006). Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus). Molecular Phylogenetics and Evolution, 39, 734–746.
  • Malone, T.W., Crowston, K., Lee, J., Pentland, B., Dellarocas, C., Wyner, G., Quimby, J., Osborn, C.S., Bernstein, A., Herman, G., Klein, M., O'donnell, E. (1999). Tools for inventing organizations: Toward a handbook of organizational processes. Management Science, 45, 425–443.
  • Miller M.P. (1997). Tools for population genetic analysis (TFPGA) 1.3: A Windows program for the analysis of allozyme and molecular population genetic data. (Computer software distributed by author).
  • Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583–590.
  • Pakaki, V., Magolulas, A., Kasapidis, P. (2009). New polymorphic microsatellite loci for population studies in the European anchovy, Engraulis encrasicolus (L.), Molecular Ecology Resources, 9, 1406–1409.
  • Pasteur, N. & Berrebi, P. (1985). Structure Génétique des Populations Naturelles d’Animaux Laguno-Marins sur des Bases de Génétique Biochimique et d’Ecologie (Contrat n° 83.J.0024 du Ministère de la Recherche, Direction du Développement Scientifique et Technologique et de l’Innovation). Montpellier, France: Université des Sciences et Techniques du Languedoc.
  • Peakall, R. & Smouse, P.E. (2012). GenAlEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics, 28, 2537–2539.
  • Shaw, P.W., Turan, C., Wright, J.M., O’connel, M., Carvalho, G.R. (1999). Microsatellite DNA analysis of population structure in Atlantic herring (Clupea harengus), with direct comparison to allozyme and mtDNA RFLP analyses. Heredity, 83, 490–499.
  • Tudela, S. (1999). Morphological variability in a Mediterranean, genetically homogeneous population of the European anchovy, Engraulis encrasicolus. Fisheries Research, 42, 229– 243.
  • Turan, C. (Ed.) (2007). Atlas and Systematics of Marine Bony Fishes of Turkey. 1st edition, Nobel Publishing House, Adana, Turkey.
  • Turan, C., Gurlek M., Erguden D., Basusta N., Turan, F. (2004). Morphometric Structuring of Anchovy (Engraulis encrasicolus L.) from the Black, Aegean and Northeastern Mediterranean Seas. Turkish Journal of Veterinary and Animal, 28, 865–871.
  • Turan, C., Gunduz, I, Gurlek, M., Yaglioglu, D., Erguden, D. 2009. Systematics of Scorpaenidae species in the Mediterranean Sea inferred from mitochondrial 16S rDNA sequence and morphological data. Folia Biologica, (Krakow) 57: 219-226.
Toplam 31 adet kaynakça vardır.

Ayrıntılar

Konular Hidrobiyoloji
Bölüm 2
Yazarlar

Cemal Turan

Serap S. Tuncay Bu kişi benim

Alen Soldo Bu kişi benim

Neven Bosnic Bu kişi benim

Fevzi Bardakçı Bu kişi benim

Yayımlanma Tarihi 20 Haziran 2017
Gönderilme Tarihi 11 Eylül 2017
Yayımlandığı Sayı Yıl 2017 Cilt: 2 Sayı: 2

Kaynak Göster

APA Turan, C., Tuncay, S. S., Soldo, A., Bosnic, N., vd. (2017). Genetic Structure of Anchovy Engraulis encrasicolus in the Adriatic Sea using Microsatellite DNA Analysis. Natural and Engineering Sciences, 2(2), 85-99. https://doi.org/10.28978/nesciences.337793

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