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Yıl 2019, Cilt: 28 Sayı: 1, 1 - 9, 30.06.2019

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Kaynakça

  • M.W. Duncan, Applications of MALDI Mass Spectrometry in Clinical Chemistry, Volume 62, Issue 1, (2016) 134–143.
  • https://sandwalk.blogspot.com/2009/02/nobel-laureates-john-b-fenn-and-koichi.html, (2009), Erişim Tarihi: 29.01.2019.
  • E.W. Ng, Advances in MALDI Mass Spectrometry in Clinical Diagnostic Applications, Chemical Diagnostics, Volume 336, (2013) 139–175.
  • K. Matsuda, PCR-Based Detection Methods for Single-Nucleotide Polymorphism or Mutation: Real-Time PCR and Its Substantial Contribution Toward Technological Refinement, Advances in Clinical Chemistry, Volume 80, (2017) 45–72.
  • K. Jitendra, Epigenetic Activation of Antibacterial Property of an Endophytic Streptomyces coelicolor Strain AZRA 37 and Identification of the Induced Protein Using MALDI TOF MS/MS, PLoS ONE 11(2), (2016) 1–12.
  • M. Tanaka, Genotyping of the ABCG2 gene using Matrix-Associated Laser Desorption/Ionization Time-of-Flight Mass Spectrometry. Transfusion Medicine, 28(3), (2017) 255–260.
  • K. Meyer, MALDI-TOF MS Genotyping of Polymorphisms Related to 1-Carbon Metabolism Using Common and Mass-Modified Terminators, Clinical Chemistry 55:1, (2009) 139–149.
  • S. Paracchini, An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations, Journal of Visualized Experiments, Issue 45, (2010) 1–5.
  • S. Sauer, Full flexibility genotyping of single nucleotide polymorphisms by the GOOD assay, Nucleic Acids Research, Volume 28(23), (2000) 1–6.
  • L. Marvin, Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in clinical chemistry, Clinica Chimica Acta, Volume 337, Issues 1–2, (2003) 11–21.
  • E.D. Zanders, Chemical Genomics and Proteomics Reviews and Protocols, Humana Press Publications, Royston, United Kingdom, (2012) 227–239.
  • Y. Zhao, Yeast identification by sequencing, biochemical kits, MALDI–TOF MS and rep-PCR DNA fingerprinting, Medical Mycology, Volume 56, Issue 7 (2017) 816–827.
  • J. Mengel-Jørgensen, MALDI-TOF mass spectrometric detection of multiplex single base extended primers. A study of 17 y-chromosome single-nucleotide polymorphisms, Analytical Chemistry 76 (20), (2004) 6039–6045.
  • G. Pulcrano, Rapid and reliable MALDI-TOF mass spectrometry identification of Candida non-albicans isolates from bloodstream infections. Journal of Microbiological Methods, Volume 94, Issue 3, (2013) 262–266.
  • S.H. Kim, Misidentification of Kan¬dida guilliermondii as C. famata among Strains Isolated from Blood Cultures by the VITEK 2 System, BioMed Research International, Volume 2014, (2014) 1–6.
  • C. Lacroix, Evaluation of two ma¬trix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) systems for the identifica¬tion of Candida species, Clinical Microbiology, and Infection, Volume 20, Issue 2, (2014) 153–158.
  • T.C. Dingle, Mass Spectrometry for Microorganism Identification. Clinics in Laboratory Medicine, Volume 33, Issue 3, (2013) 589–609
  • E. Bille MALDI-TOF MS Andromas strategy for the routine identification of bacteria, mycobacteria, yeasts, Aspergillus spp. and positive blood cultures, Clinical Microbiology and Infection, Volume 18, Issue 11, (2012) 1117–1125.
  • K.E. Tan, Prospective evaluation of a matrix-assisted laser desorption ionization-time of flight mass spectrometry system in a hospital clinical microbiology laboratory for identification of bacteria and yeasts: a bench-by-bench study for assessing the impact on time to identification and cost-effectiveness. Journal of Clinical Microbiology, Volume 50, (2012) 3301–3308.
  • Y.T. Cho, Biomarker Characterization by MALDI–TOF/MS, Advances in Clinical Chemistry, Volume 69, (2015) 209–254.
  • P. Rahi, Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists, Frontiers in Microbiology, Volume 7, Article 1359, (2016) 1–12.

GENERAL OVERVIEW OF THE STUDIES WITH MALDI-TOF

Yıl 2019, Cilt: 28 Sayı: 1, 1 - 9, 30.06.2019

Öz

In the 1980s, the discovery of a variety of soft ionization techniques provided the technical basis for the first time mass spectrometric detection and analysis of free, chemically polar, variable biopolymers and their degradation products. In recent years, Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) has become a well-liked and multifaceted method to perform analyses of macromolecules which is the biological origin. This review provides a general overview of the areas of use of MALDI-TOF MS for biotechnological researches. MALDI-TOF MS is a way that supplies well-directed, affordable, and speedy identification of fungi, viruses, bacteria in clinical microbiological laboratories. Newly, this method has been successfully applied to DNA sequencing (genotyping) as well as mutation screening. Also, this way has the potential to become a conventional method for high throughput genotyping of single nucleotide polymorphisms (SNPs), both for biotechnology laboratories and for clinical applications. When it is compared with conventional and molecular identification methods, it makes a major contribution to minimizing the mortality rate and hospitalization period of the patients. It is more effective on per sample costs and elapsed time on working.

Kaynakça

  • M.W. Duncan, Applications of MALDI Mass Spectrometry in Clinical Chemistry, Volume 62, Issue 1, (2016) 134–143.
  • https://sandwalk.blogspot.com/2009/02/nobel-laureates-john-b-fenn-and-koichi.html, (2009), Erişim Tarihi: 29.01.2019.
  • E.W. Ng, Advances in MALDI Mass Spectrometry in Clinical Diagnostic Applications, Chemical Diagnostics, Volume 336, (2013) 139–175.
  • K. Matsuda, PCR-Based Detection Methods for Single-Nucleotide Polymorphism or Mutation: Real-Time PCR and Its Substantial Contribution Toward Technological Refinement, Advances in Clinical Chemistry, Volume 80, (2017) 45–72.
  • K. Jitendra, Epigenetic Activation of Antibacterial Property of an Endophytic Streptomyces coelicolor Strain AZRA 37 and Identification of the Induced Protein Using MALDI TOF MS/MS, PLoS ONE 11(2), (2016) 1–12.
  • M. Tanaka, Genotyping of the ABCG2 gene using Matrix-Associated Laser Desorption/Ionization Time-of-Flight Mass Spectrometry. Transfusion Medicine, 28(3), (2017) 255–260.
  • K. Meyer, MALDI-TOF MS Genotyping of Polymorphisms Related to 1-Carbon Metabolism Using Common and Mass-Modified Terminators, Clinical Chemistry 55:1, (2009) 139–149.
  • S. Paracchini, An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations, Journal of Visualized Experiments, Issue 45, (2010) 1–5.
  • S. Sauer, Full flexibility genotyping of single nucleotide polymorphisms by the GOOD assay, Nucleic Acids Research, Volume 28(23), (2000) 1–6.
  • L. Marvin, Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in clinical chemistry, Clinica Chimica Acta, Volume 337, Issues 1–2, (2003) 11–21.
  • E.D. Zanders, Chemical Genomics and Proteomics Reviews and Protocols, Humana Press Publications, Royston, United Kingdom, (2012) 227–239.
  • Y. Zhao, Yeast identification by sequencing, biochemical kits, MALDI–TOF MS and rep-PCR DNA fingerprinting, Medical Mycology, Volume 56, Issue 7 (2017) 816–827.
  • J. Mengel-Jørgensen, MALDI-TOF mass spectrometric detection of multiplex single base extended primers. A study of 17 y-chromosome single-nucleotide polymorphisms, Analytical Chemistry 76 (20), (2004) 6039–6045.
  • G. Pulcrano, Rapid and reliable MALDI-TOF mass spectrometry identification of Candida non-albicans isolates from bloodstream infections. Journal of Microbiological Methods, Volume 94, Issue 3, (2013) 262–266.
  • S.H. Kim, Misidentification of Kan¬dida guilliermondii as C. famata among Strains Isolated from Blood Cultures by the VITEK 2 System, BioMed Research International, Volume 2014, (2014) 1–6.
  • C. Lacroix, Evaluation of two ma¬trix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) systems for the identifica¬tion of Candida species, Clinical Microbiology, and Infection, Volume 20, Issue 2, (2014) 153–158.
  • T.C. Dingle, Mass Spectrometry for Microorganism Identification. Clinics in Laboratory Medicine, Volume 33, Issue 3, (2013) 589–609
  • E. Bille MALDI-TOF MS Andromas strategy for the routine identification of bacteria, mycobacteria, yeasts, Aspergillus spp. and positive blood cultures, Clinical Microbiology and Infection, Volume 18, Issue 11, (2012) 1117–1125.
  • K.E. Tan, Prospective evaluation of a matrix-assisted laser desorption ionization-time of flight mass spectrometry system in a hospital clinical microbiology laboratory for identification of bacteria and yeasts: a bench-by-bench study for assessing the impact on time to identification and cost-effectiveness. Journal of Clinical Microbiology, Volume 50, (2012) 3301–3308.
  • Y.T. Cho, Biomarker Characterization by MALDI–TOF/MS, Advances in Clinical Chemistry, Volume 69, (2015) 209–254.
  • P. Rahi, Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists, Frontiers in Microbiology, Volume 7, Article 1359, (2016) 1–12.
Toplam 21 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Yapısal Biyoloji
Bölüm Review Articles
Yazarlar

Evrim Kocaman Bu kişi benim 0000-0002-8498-3395

Sumer Aras Bu kişi benim 0000-0003-3474-9493

Yayımlanma Tarihi 30 Haziran 2019
Kabul Tarihi 30 Mart 2019
Yayımlandığı Sayı Yıl 2019 Cilt: 28 Sayı: 1

Kaynak Göster

Communications Faculty of Sciences University of Ankara Series C-Biology.

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