Araştırma Makalesi
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Yıl 2019, Cilt: 28 Sayı: 1, 78 - 90, 30.06.2019

Öz

Kaynakça

  • M.Goodfellow and A.G O' Donnell, Chemical Methods in Prokaryotic Systematics, John Wiley and Sons, Chichester, 1994.
  • M. Goodfellow and D.E Minnikin, Chemical Methods in Bacterial Systematics, Society for Applied Bacteriology, Technical Series No: 20, Academic Press, London and New York, 1985.
  • E. Stackebrandt and M. Goodfellow (Editors), Nucleic Acid Techniques in Bacterial Systematics, Journal of Basic Microbiology, 31 (6), (1991) 479-480.
  • I. Yamashita, M.Nakamura and S. Fukui, Gene fusion is a possible mechanism underlying the evolution of STA1, Journal of Bacteriology, 169 (5), (1987) 2142-2149.
  • K.H. Schleifer and O. Kandler, Peptidoglycan types of bacterial cell walls and their taxonomic implication, Microbiology and Molecular Biology Reviews, 36 (4), (1972) 407. [6] A.M. Glauert and M.J. Thornley, The topography of the bacterial cell wall, Annual Reviews in Microbiology, 23 (1), (1969) 159-198.
  • M.P. Lechevalier and H.A. Lechevalier, Chemical composition as a criterion in the classification of actinomycetes, International Journal of Systematic Bacteriology, 20, (1970b) 435-443.
  • M. Leyh-Bouille, R. Bonaly, J.M. Ghuysen, R. Tinelli, D. Tipper, LL-diaminopimelic acid containing peptidoglycans in walls of Streptomyces sp. and of Clostridium perfringens (type A), Biochemistry, 21 (15), (1970) 2944–2952.
  • M.P. Lechevalier and H. Lechevalier, Chemical composition as a criterion in the classification of aerobic actinomycetes, International Journal of Systematic and Evolutionary Microbiology, 20 (4), (1970) 435-443.
  • J. Baddiley, Teichoic acids and the molecular structure of bacterial walls, The Leeuwenhoek lecture Proc R Soc Lond B Biol Sci, 170 (1021), (1967) 331–348.
  • J. Baddiley, J.G. Buchanan, F.E. Hardy, R.O. Martin, U.L. Rajbhandary, A.R. Sanderson, The structure of the ribitol teichoic acid of Staphylococcus aureus, Biochimica et Biophysica Acta, 52, (1961) 406–407.
  • J.J. Armstrong, J. Baddiley, J.G. Buchanan, Further studies on the teichoic acid from Bacillus subtilis walls, Biochemical Journal, 80, (1961) 254–261.
  • J. Baddiley, J.G. Buchanan, U.L. Rajbhandary, A.R. Sanderson, Teichoic acid from the walls of Staphylococcus aureus structure of the N-acetylglucosaminyl-ribitol residues, Biochemical Journal, 82, (1962) 439–448.
  • F. Kanetsuna, T. Imaeda, G. Cunto, On the linkage between mycolic acid and arabinogalactan in phenol-treated myobacterial cell walls, Biochimica et Biophysica Acta, 173 (2), (1969) 341–344.
  • D.E. Minnikin, P.V. Patel, L. Alshamaony and M. Goodfellow, Polar lipid composition in the classification of Nocardia and related bacteria, International Journal of Systematic and Evolutionary Microbiology, 27 (2), (1977) 104-117.
  • N. Fujimoto, T. Kosaka and M. Yamada, Menaquinone as well as ubiquinone as a crucial component in the Escherichia coli respiratory chain, In Chemical Biology, InTech, (2012).
  • L. Jeffries, M.A. Cawthorne, M. Harris, B. Cook and A.T. Diplock, Menaquinone determination in the taxonomy of Micrococcaceae, Microbiology, 54 (3), (1968) 365-380.
  • K. Hamana and S. Matsuzaki, Polyamines as a chemotaxonomic marker in bacterial systematics, Critical Reviews in Microbiology, 18 (4), (1992) 261-283.
  • S. Yamamoto, K. Hamanaka, Y. Suemoto, B. Ono and S. Shinoda, Evidence for the presence of a novel biosynthetic pathway for norspermidine in Vibrio, Canadian Journal of Microbiology, 32, (1986) 99.
  • [Z. Zhang, Y. Wang and J. Ruan, Reclassification of Thermomonospora and Microtetraspora, International journal of systematic bacteriology , 48, (1998a) 411–422.
  • C. Dalmastri, L. Gastaldo, GL. Marcone, E. Binda, T. Congiu, F. Marinelli, Classification of Nonomuraea sp. ATCC 39727, an Actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov., International Journal of Systematic and Evolutionary Microbiology, 66 (2), (2016) 912-921.
  • F.S. Gokdemir, Nonomuraea cinsine ait izolatların Multi gen dizi analizine dayalı filogenetik sistematiği, Yüksek Lisans Tezi, Ondokuz Mayıs Universitesi, Fen Bilimleri Enstitüsü, (2014).
  • R. Rosselló-Mora and R. Amann, The species concept for prokaryotes, FEMS Microbiology Reviews, 25 (1), (2001) 39-67.
  • P. Vandamme, B. Pot, M. Gillis, P. De Vos, K. Kersters & J. Swings, Polyphasic taxonomy, a consensus approach to bacterial systematics, Microbiology and Molecular Biology Reviews, 60 (2), (1996) 407-438.
  • M.P. Lechevalier and C.W. Moss, Lipids in bacterial taxonomy-a taxonomist's view, CRC Critical Reviews in Microbiology, 5 (2), (1977) 109-210.
  • E.A. Barka, P. Vatsa, L. Sanchez, N.Gaveau-Vaillant, C.Jacquard, H. Klenk, & G. P. Van Wezel, Taxonomy, physiology, and natural products of Actinobacteria, Microbiology and Molecular Biology Reviews, 80 (1), (2016) 1-43.
  • Y. Wang and Y. Jiang, Chemotaxonomy of actinobacteria, In Actinobacteria-Basics and Biotechnological Applications, IntechOpen, (2016).

CHEMOTAXONOMY IN BACTERIAL SYSTEMATICS

Yıl 2019, Cilt: 28 Sayı: 1, 78 - 90, 30.06.2019

Öz

In taxonomy, polyphasic approach is based on the principle of combining and
evaluating different types of data obtained from microorganisms. While, during characterization
and identification of a microorganism, in the direction of polyphasic studies, chemotaxonomic
analysis has of paramount importance for the determination of the most important differences
between the family, genus and species comparatively. It is beyond doubt that, in recent years
significant developments have been achieved in systematics by the aid of molecular biological
studies. Phylogenetic data have revealed the hierarchical arrangement of the kinship relations
between the given bacteria, however, this information cannot provide reliable data on the level of
genus. At this stage, chemical markers play an important role in regulating inter-taxa
relationships. Chemotaxonomy; is the whole of the characterizations made by using the
similarities and differences of the biochemical properties of bacteria. In bacterial systematics,
chemotaxonomy examines biochemical markers such as: amino acids and peptides
(peptidoglycan), lipids (fatty acid, lipopolysaccharides, micolic acid and polar lipids),
polysaccharides and related polymers (teicoic acid, whole sugar) and other complex polymeric
compounds to find the distribution of members of different taxa and all of this information is
used for classification and identification. In this review, how the chemotaxonomic data can be
used in bacterial systematics and reflected to application within the field questions were
evaluated.-REVIEW.
  

Kaynakça

  • M.Goodfellow and A.G O' Donnell, Chemical Methods in Prokaryotic Systematics, John Wiley and Sons, Chichester, 1994.
  • M. Goodfellow and D.E Minnikin, Chemical Methods in Bacterial Systematics, Society for Applied Bacteriology, Technical Series No: 20, Academic Press, London and New York, 1985.
  • E. Stackebrandt and M. Goodfellow (Editors), Nucleic Acid Techniques in Bacterial Systematics, Journal of Basic Microbiology, 31 (6), (1991) 479-480.
  • I. Yamashita, M.Nakamura and S. Fukui, Gene fusion is a possible mechanism underlying the evolution of STA1, Journal of Bacteriology, 169 (5), (1987) 2142-2149.
  • K.H. Schleifer and O. Kandler, Peptidoglycan types of bacterial cell walls and their taxonomic implication, Microbiology and Molecular Biology Reviews, 36 (4), (1972) 407. [6] A.M. Glauert and M.J. Thornley, The topography of the bacterial cell wall, Annual Reviews in Microbiology, 23 (1), (1969) 159-198.
  • M.P. Lechevalier and H.A. Lechevalier, Chemical composition as a criterion in the classification of actinomycetes, International Journal of Systematic Bacteriology, 20, (1970b) 435-443.
  • M. Leyh-Bouille, R. Bonaly, J.M. Ghuysen, R. Tinelli, D. Tipper, LL-diaminopimelic acid containing peptidoglycans in walls of Streptomyces sp. and of Clostridium perfringens (type A), Biochemistry, 21 (15), (1970) 2944–2952.
  • M.P. Lechevalier and H. Lechevalier, Chemical composition as a criterion in the classification of aerobic actinomycetes, International Journal of Systematic and Evolutionary Microbiology, 20 (4), (1970) 435-443.
  • J. Baddiley, Teichoic acids and the molecular structure of bacterial walls, The Leeuwenhoek lecture Proc R Soc Lond B Biol Sci, 170 (1021), (1967) 331–348.
  • J. Baddiley, J.G. Buchanan, F.E. Hardy, R.O. Martin, U.L. Rajbhandary, A.R. Sanderson, The structure of the ribitol teichoic acid of Staphylococcus aureus, Biochimica et Biophysica Acta, 52, (1961) 406–407.
  • J.J. Armstrong, J. Baddiley, J.G. Buchanan, Further studies on the teichoic acid from Bacillus subtilis walls, Biochemical Journal, 80, (1961) 254–261.
  • J. Baddiley, J.G. Buchanan, U.L. Rajbhandary, A.R. Sanderson, Teichoic acid from the walls of Staphylococcus aureus structure of the N-acetylglucosaminyl-ribitol residues, Biochemical Journal, 82, (1962) 439–448.
  • F. Kanetsuna, T. Imaeda, G. Cunto, On the linkage between mycolic acid and arabinogalactan in phenol-treated myobacterial cell walls, Biochimica et Biophysica Acta, 173 (2), (1969) 341–344.
  • D.E. Minnikin, P.V. Patel, L. Alshamaony and M. Goodfellow, Polar lipid composition in the classification of Nocardia and related bacteria, International Journal of Systematic and Evolutionary Microbiology, 27 (2), (1977) 104-117.
  • N. Fujimoto, T. Kosaka and M. Yamada, Menaquinone as well as ubiquinone as a crucial component in the Escherichia coli respiratory chain, In Chemical Biology, InTech, (2012).
  • L. Jeffries, M.A. Cawthorne, M. Harris, B. Cook and A.T. Diplock, Menaquinone determination in the taxonomy of Micrococcaceae, Microbiology, 54 (3), (1968) 365-380.
  • K. Hamana and S. Matsuzaki, Polyamines as a chemotaxonomic marker in bacterial systematics, Critical Reviews in Microbiology, 18 (4), (1992) 261-283.
  • S. Yamamoto, K. Hamanaka, Y. Suemoto, B. Ono and S. Shinoda, Evidence for the presence of a novel biosynthetic pathway for norspermidine in Vibrio, Canadian Journal of Microbiology, 32, (1986) 99.
  • [Z. Zhang, Y. Wang and J. Ruan, Reclassification of Thermomonospora and Microtetraspora, International journal of systematic bacteriology , 48, (1998a) 411–422.
  • C. Dalmastri, L. Gastaldo, GL. Marcone, E. Binda, T. Congiu, F. Marinelli, Classification of Nonomuraea sp. ATCC 39727, an Actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov., International Journal of Systematic and Evolutionary Microbiology, 66 (2), (2016) 912-921.
  • F.S. Gokdemir, Nonomuraea cinsine ait izolatların Multi gen dizi analizine dayalı filogenetik sistematiği, Yüksek Lisans Tezi, Ondokuz Mayıs Universitesi, Fen Bilimleri Enstitüsü, (2014).
  • R. Rosselló-Mora and R. Amann, The species concept for prokaryotes, FEMS Microbiology Reviews, 25 (1), (2001) 39-67.
  • P. Vandamme, B. Pot, M. Gillis, P. De Vos, K. Kersters & J. Swings, Polyphasic taxonomy, a consensus approach to bacterial systematics, Microbiology and Molecular Biology Reviews, 60 (2), (1996) 407-438.
  • M.P. Lechevalier and C.W. Moss, Lipids in bacterial taxonomy-a taxonomist's view, CRC Critical Reviews in Microbiology, 5 (2), (1977) 109-210.
  • E.A. Barka, P. Vatsa, L. Sanchez, N.Gaveau-Vaillant, C.Jacquard, H. Klenk, & G. P. Van Wezel, Taxonomy, physiology, and natural products of Actinobacteria, Microbiology and Molecular Biology Reviews, 80 (1), (2016) 1-43.
  • Y. Wang and Y. Jiang, Chemotaxonomy of actinobacteria, In Actinobacteria-Basics and Biotechnological Applications, IntechOpen, (2016).
Toplam 26 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Yapısal Biyoloji
Bölüm Review Articles
Yazarlar

F. Seyma Gokdemır Bu kişi benim 0000-0003-2951-848X

Sumer Aras Bu kişi benim 0000-0003-3474-9493

Yayımlanma Tarihi 30 Haziran 2019
Kabul Tarihi 14 Mayıs 2019
Yayımlandığı Sayı Yıl 2019 Cilt: 28 Sayı: 1

Kaynak Göster

Communications Faculty of Sciences University of Ankara Series C-Biology.

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