TY - JOUR T1 - Genetic diversity analysis of sesame (Sesamum indicum L.) genotypes in Türkiye using SSR markers TT - Türkiye’deki susam (Sesamum indicum L.) genotiplerinin genetik çeşitliliğinin SSR markörleri ile analizi AU - Tanur Erkoyuncu, Münüre AU - Hakkı, Erdoğan AU - Koç Koyun, Nur AU - Yorgancılar, Mustafa PY - 2025 DA - August Y2 - 2025 DO - 10.37908/mkutbd.1645274 JF - Mustafa Kemal Üniversitesi Tarım Bilimleri Dergisi JO - MKU. Tar. Bil. Derg. PB - Hatay Mustafa Kemal University WT - DergiPark SN - 2667-7733 SP - 472 EP - 486 VL - 30 IS - 2 LA - en AB - This study aimed to analyze the genetic diversity of 25 different sesame (Sesamum indicum L.) genotypes cultivated in Türkiye, including 16 registered cultivars, 6 local populations, 1 Indian population adapted to the ecological conditions of Konya, and 2 genotypes of Indian origin, using SSR markers. Genetic diversity was assessed using 10 different SSR primers, resulting in a total of 79 polymorphic bands. The CUESTSSR02 primer was the most efficient one with high values for Polymorphic Allele Number (PA), Polymorphic Information Content (PIC), Expected Heterozygosity (He), and Marker Index (MI). Genetic relationships between genotypes were analyzed and visualized using a circular phylogenetic tree, PCoA, and a heatmap. The findings revealed that the local populations are genetically distinct from both registered cultivars and Indian genotypes. Notably, the Akören genotype was identified as genetically isolated from all other genotypes. This study highlights the crucial role of local populations in preserving and enhancing genetic diversity. The integration of Indian genotypes with local populations may contribute to the development of more resilient and productive cultivars. The findings emphasize that the effective use of genetic resources can support sustainable agriculture and improve agricultural performance. KW - Sesame (Sesamum inducum L.) KW - SSR markers KW - Genetic diversity KW - Local populations N2 - Bu çalışma, Türkiye’de yetiştirilen 16 tescilli çeşit, 6 yerel popülasyon, Konya ekolojik koşullarına uyum sağlamış 1 Hint popülasyonu ve Hindistan kökenli 2 genotip olmak üzere toplam 25 farklı susam genotipinin genetik çeşitliliğini SSR (Simple Sequence Repeat) markörleri kullanarak analiz etmeyi amaçlamıştır. Araştırmada, 10 farklı SSR primeri ile yapılan genetik çeşitlilik değerlendirmesi sonucunda toplam 79 polimorfik bant tespit edilmiştir. CUESTSSR02 primeri, yüksek Polimorfik Allel Sayısı (PA), Polimorfik Bilgi İçeriği (PIC), Beklenen Heterozigotluk (He) ve Markör İndeksi (MI) değerleri ile en verimli primer olarak öne çıkmıştır.Genotipler arasındaki genetik ilişkiler, dairesel filogenetik ağaç, Temel Koordinatlar Analizi (TKoA) ve ısı haritası gibi yöntemlerle görselleştirilerek analiz edilmiştir. Elde edilen bulgular, yerel popülasyonların tescilli çeşitlerden ve Hindistan genotiplerinden genetik olarak farklılaştığını ortaya koymuştur. Özellikle Akören genotipi, tüm diğer genotiplerden genetik olarak izole bir yapıya sahip bulunmuştur. Çalışma, yerel popülasyonların genetik çeşitliliğin korunması ve artırılmasında önemli bir rol oynadığını göstermektedir. Hindistan genotiplerinin yerel popülasyonlarla birleştirilmesi, daha dayanıklı ve verimli varyetelerin geliştirilmesine katkı sağlayabilir. Sonuçlar, genetik kaynakların etkin kullanımının sürdürülebilir tarımı destekleyerek tarımsal performansı artırabileceğini ortaya koymaktadır. CR - Anderson, J.A., Churchill, G.A., Autrique, J.E., Tanksley, S.D., & Sorrells, M.E. (1993). Optimizing parental selection for genetic linkage maps. Genome, 36 (1), 181-186. https://doi.org/10.1139/g93-024 CR - Andrade, P.B.d., Freitas, B.M., Rocha, E.E.d.M., Lima, J.A.d., & Rufino, L.L. (2014). Floral biology and pollination requirements of sesame (Sesamum indicum L.). Acta Scientiarum. Animal Sciences, 36 (1), 93-99. https://doi.org/10.4025/actascianimsci.v36i1.21838 CR - Anggraeni, T., Fadilah, S., Kusnadi, J., & Basuki, S. (2022). The use of ISSR markers for clustering sesame genotypes based on geographical origin. IOP Conference Series: Earth and Environmental Science, 974, 012031. CR - Asekova, S., Kulkarni, K.P., Oh KiWon, O.K., Lee MyungHee, L.M., Oh EunYoung, O.E., Kim JungIn, K.J., Yeo UnSang, Y.U., Pae SukBok, P.S., Ha TaeJoung, H.T., & Kim SungUp, K.S. (2018). Analysis of molecular variance and population structure of sesame (Sesamum indicum L.) genotypes using simple sequence repeat markers. Plant Breeding and Biotechnology, 6, 321-336. https://doi.org/10.9787/PBB.2018.6.4.321 CR - Ashfaq, M., Rani, K.J., Padmaja, D., Yadav, P., & Betha, U.K. (2024). Analysis of genetic diversity in sesame (Sesamum indicum L.) germplasm lines based on agro-morphological traits and SSR markers. Electronic Journal of Plant Breeding, 15 (4), 962-971. https://doi.org/10.37992/2024.1504.105 CR - Ashri, A. (2006). Sesame (Sesamum indicum L.). Genetic Resources, Chromosome Engineering, and Crop Improvement: Oilseed Crops, 4, 231-289. CR - Bhattacharjee, M., Prakash, S., Roy, S., Soumen, S., Begum, T., & Dasgupta, T. (2020). SSR-based DNA fingerprinting of 18 elite Indian varieties of sesame (Sesamum indicum L.). The Nucleus, 63, 67-73. https://doi.org/10.1007/s13237-019-00290-3 CR - Botstein, D., White, R.L., Skolnick, M., & Davis, R.W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. The American Journal of Human Genetics, 32 (3), 314-331. https://www.ncbi.nlm.nih.gov/pubmed/6247908 CR - Chesnokov, Y.V., & Artemyeva, A. (2015). Evaluation of the measure of polymorphism information of genetic diversity. Сельскохозяйственная биология, (5 (eng)), 571-578. https://doi.org/10.15389/agrobiology.2015.5.571eng CR - Cornea-Cipcigan, M., Pamfil, D., Sisea, C.R., & Margaoan, R. (2023). Characterization of Cyclamen genotypes using morphological descriptors and DNA molecular markers in a multivariate analysis. Frontiers in Plant Science, 14, 1100099. https://doi.org/10.3389/fpls.2023.1100099 CR - Dossa, K., Wei, X., Zhang, Y., Fonceka, D., Yang, W., Diouf, D., Liao, B., Cisse, N., & Zhang, X. (2016). Analysis of genetic diversity and population structure of sesame accessions from Africa and Asia as major centers of its cultivation. Genes (Basel), 7 (4), 14. https://doi.org/10.3390/genes7040014 CR - Doyle, J.J. (1990). Isolation of plant DNA from fresh tissue. Focus, 12, 13-15. https://doi.org/10016746787 CR - Elston, R.C., Olson, J.M., & Palmer, L. (2002). Biostatistical genetics and genetic epidemiology (Vol. 1). John Wiley & Sons. CR - Emon, R.M., Sakib, M.N., Khatun, M.K., Malek, M.A., Haque, M.S., & Alam, M.A. (2023). Microsatellite marker assisted molecular and morpho-physiological genetic diversity assessment in 38 genotypes of sesame (Sesamum indicum L.). Journal of Phytology, 15, 43-51. https://doi.org/10.25081/jp.2023.v15.7902 CR - Guo, X., & Elston, R.C. (1999). Linkage information content of polymorphic genetic markers. Human Heredity, 49 (2), 112-118. https://doi.org/10.1159/000022855 CR - Jaccard, P. (1908). Nouvelles recherches sur la distribution florale. Bulletin de la Société Vaudoise des Sciences Naturelles, 44, 223-270. CR - Liang, J., Sun, J., Ye, Y., Yan, X., Yan, T., Rao, Y., Zhou, H., & Le, M. (2021). QTL mapping of PEG-induced drought tolerance at the early seedling stage in sesame using whole genome re-sequencing. PLoS One, 16 (2), e0247681. https://doi.org/10.1371/journal.pone.0247681 CR - Liu, K., Goodman, M., Muse, S., Smith, J.S., Buckler, E., & Doebley, J. (2003). Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics, 165 (4), 2117-2128. https://doi.org/10.1093/genetics/165.4.2117 CR - Meena, R., Singh, B., Meena, K., Meena, R., Singh, B., & Gurjar, P. (2018). Performance of front-line demonstrations on sesame (Sesamum indicum L.) in Karauli District of Rajasthan, India. International Journal of Current Microbiology and Applied Sciences, 7 (3), 1507-1511. https://doi.org/10.20546/ijcmas.2018.703.179 CR - Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89 (3), 583-590. https://doi.org/10.1093/genetics/89.3.583 CR - Porebski, S., Bailey, L.G., & Baum, B.R. (1997). Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Molecular Biology Reporter, 15, 8-15. https://doi.org/10.1007/Bf02772108 CR - Powell, W., Machray, G.C., & Provan, J. (1996). Polymorphism revealed by simple sequence repeats. Trends in Plant Science, 1 (7), 215-222. https://doi.org/1360-1385(96)86898-1 CR - Teklu, D.H., Shimelis, H., & Abady, S. (2022). Genetic improvement in sesame (Sesamum indicum L.): Progress and outlook: A review. Agronomy, 12 (9), 2144. https://doi.org/10.3390/agronomy12092144 CR - Uncu, A.O., Gultekin, V., Allmer, J., Frary, A., & Doganlar, S. (2015). Genomic simple sequence repeat markers reveal patterns of genetic relatedness and diversity in sesame. Plant Genome, 8 (2), eplantgenome2014 2011 0087. https://doi.org/10.3835/plantgenome2014.11.0087 CR - Williams, S.E., & Hoffman, E.A. (2009). Minimizing genetic adaptation in captive breeding programs: A review. Biological Conservation, 142 (11), 2388-2400. https://doi.org/10.1016/j.biocon.2009.05.034 CR - Yaseen, G., Ahmad, M., Zafar, M., Akram, A., Sultana, S., Ahmed, S.N., & Kilic, O. (2021). Sesame (Sesamum indicum L.). In green sustainable process for chemical and environmental engineering and science (pp. 253-269). Elsevier. https://doi.org/10.1016/B978-0-12-821886-0.00005-1 CR - Yepuri, V., Surapaneni, M., Kola, V.S.R., Vemireddy, L., Jyothi, B., Dineshkumar, V., Anuradha, G., & Siddiq, E. (2013). Assessment of genetic diversity in sesame (Sesamum indicum L.) genotypes, using EST-derived SSR markers. Journal of Crop Science and Biotechnology, 16 (2), 93-103. https://doi.org/10.1007/s12892-012-0116-9 CR - Yi, L., Dong, Z., Lei, Y., Zhao, J., Xiong, Y., Yang, J., Xiong, Y., Gou, W., & Ma, X. (2021). Genetic diversity and molecular characterization of worldwide prairie grass (Bromus catharticus Vahl) accessions using SRAP markers. Agronomy, 11 (10), 2054. https://doi.org/10.3390/agronomy11102054 CR - Zhang, H., Wei, L., Miao, H., Zhang, T., & Wang, C. (2012). Development and validation of genic-SSR markers in sesame by RNA-seq. BMC Genomics, 13, 316. https://doi.org/10.1186/1471-2164-13-316 UR - https://doi.org/10.37908/mkutbd.1645274 L1 - https://dergipark.org.tr/en/download/article-file/4633727 ER -