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Year 2020, Volume 2, Issue 2, 98 - 113, 26.08.2020
https://doi.org/10.38058/ijsl.770081

Abstract

References

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  • Adu, G.B., Awuku, F.J., Amegbor, I.K., Haruna, A., Manigben, K.A. et al. 2019. Genetic characterization and population structure of maize populations using SSR markers, Annals of Agricultural Sciences, 64(1): 47-54.
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  • Asadi, A., Ebrahimi, A., Rashidi-Monfared, S., Basiri, M., Akbari-Afjani, J. 2020. Comprehensive functional analysis and mapping of SSR markers in the chickpea genome (Cicer arietinum L.), Computational Biology and Chemistry, 84: 107169.
  • Ayala-Usma, D.A., Danies, G., Myers, K., Bond, M.O., Romero-Navarro, J.A. et al. 2020. Genome-wide association study identifies single nucleotide polymorphism markers associated with mycelial growth (at 15, 20, and 25oC), mefenoxam resistance, and mating type in Phytophthora infestans, Phytopathology, 110(4): 822-833.
  • Babu, B.K., Mathur, R.K., Kumar, P.N., Ramajayam, D., Ravichandran, G. et al. 2017. Development, identification and validation of CAPS marker for SHELL trait which governs dura, pisifera and tenera fruit forms in oil palm (Elaeis guineensis Jacq.), PLoS ONE, 12(2): e0171933.
  • Bernard, A., Barreneche, T., Lheureux, F., Dirlewanger, E. 2018. Analysis of genetic diversity and structure in a worldwide walnut (Juglans regia L.) germplasm using SSR markers, PLoS ONE, 13(11): e0208021.
  • Bínová, Z., Korecký, J., Dvořák, J., Bílý, J., Zádrapová, D. et al. 2020. Genetic structure of norway spruce ecotypes studied by SSR markers, Forests, 11(1): 110.
  • Biswas, M.K., Nath, U.K., Howlader, J., Bagchi, M., Natarajan, S. et al. 2018. Exploration and exploitation of novel SSR markers for candidate transcription factor genes in Lilium species, Genes, 9: 97.
  • Cao, J., Zhou, Z., Tu, J., Cheng, S., Yao, J. et al. 2019. Genetic diversity and population structure analysis of sand pear (Pyrus pyrifolia) ‘Nakai’ varieties using SSR and AFLP markers, Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 47(3): 970-979.
  • Chen, C.L., Xu, M.L., Wang, C.P., Qiao, G.X., Wang, W.W. et al. 2017. Characterization of the Lycium barbarum fruit transcriptome and development of EST-SSR markers, PLoS ONE, 12: e0187738.
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  • Collard, B.C., Mackill, D.J. 2009. Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants, Plant Molecular Biology Reporter, 27(1): 86-93.
  • Csencsics, D., Brodbeck, S., Holderegger, R. 2010. Cost-Effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing technology, Journal of Heredity, 101: 789-793.
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  • El-Fiki, A., Adly, M. 2019. Genetic variation and molecular characterization in some potato cultivars using random amplified polymorphic DNA and start codon targeted markers, Egyptian Journal of Biotechnology, 59.
  • Etminan, A., Pour-Aboughadareh, A., Mohammadi, R., Ahmadi-Rad, A., Noori, A. et al. 2016. Applicability of start codon targeted (SCoT) and inter-simple sequence repeat (ISSR) markers for genetic diversity analysis in durum wheat genotypes, Biotechnology & Biotechnological Equipment, 30(6): 1075-1081.
  • Fatai, R.B., Akinyemi, M.O., Osaiyuwu, O.H. 2020. In silico analysis of single nucleotide polymorphism in inha gene of sheep and goats, Biotechnology Journal International, 12-21.
  • Fazeli-Nasab, B., Sayyed, R.Z., Farsi, M., Ansari, S., El-Enshasy, H.A. 2020. Genetic assessment of the internal transcribed spacer region (ITS1. 2) in Mangifera indica L. landraces, Physiology and Molecular Biology of Plants, 26(1): 107-117.
  • Gasser, R.B., Hu, M., Chilton, N.B., Campbell, B.E., Jex, A.J. et al. 2006. Single-strand conformation polymorphism (SSCP) for the analysis of genetic variation, Nature protocols, 1(6): 3121.
  • Günaydın, S., Kafkas, S. Characterization of strawberry cultivars by SSR and CAPS Markers. VIII International Strawberry Symposium, 13-17 August 2016, p. 171-178.
  • Ghielmetti, G., Scherrer, S., Friedel, U., Frei, D., Suter, D. et al. 2017. Epidemiological tracing of bovine tuberculosis in Switzerland, multilocus variable number of tandem repeat analysis of Mycobacterium bovis and Mycobacterium caprae, PLoS ONE, 12(2): e0172474.
  • Gholamian, F., Etminan, A., Changizi, M., Khaghani, S., Gomarian, M. 2019. Assessment of genetic diversity in Triticum urartu Thumanjan ex Gandilyan accessions using start codon targeted polymorphism (SCoT) and CAAT-box derived polymorphism (CBDP) markers, Biotechnology & Biotechnological Equipment, 33(1): 1653-1662.
  • Grover, A., Sharma, P.C. 2016. Development and use of molecular markers: past and present, Critical Reviews in Biotechnology, 36(2): 290-302.
  • Guan, C., Chachar, S., Zhang, P., Hu, C., Wang, R. et al. 2020. Inter-and intra-specific genetic diversity in Diospyros using SCoT and IRAP markers, Horticultural Plant Journal, 6(2): 71-80.
  • Hadipour, M., Kazemitabar, S.K., Yaghini, H., Dayani, S. 2020. Genetic diversity and species differentiation of medicinal plant Persian Poppy (Papaver bracteatum L.) using AFLP and ISSR markers, Ecological Genetics and Genomics, 100058.
  • Holasou, H.A., Rahmati, F., Rahmani, F., Imani, M., Talebzadeh, Z. 2019. Elucidate genetic diversity and population structure of bread wheat (Triticum aestivum L.) cultivars using IRAP and REMAP markers, Journal of Crop Science and Biotechnology, 22(2): 139-151.
  • Hu, Y., Li, B.Q., da Jin, Z., He, L.H., Tao, X.X. et al. 2015. Identification of Variable-Number Tandem-Repeat (VNTR) sequences in Acinetobacter pittii and development of an optimized multiple-locus VNTR analysis typing scheme, Biomedical and Environmental Sciences, 28(12): 855-63.
  • Hubhachen, Z., Jiang, H., Schlipalius, D., Park, Y., Guedes, R.N. et al. 2020. A CAPS marker for determination of strong phosphine resistance in Tribolium castaneum from Brazil, Journal of Pest Science, 93(1): 127-134.
  • Imwong, M., Mathema, V. B., Nakeesathit, S., Pagornrat, W., Smithuis, F. et al. 2019. Polymorphic markers for identification of parasite population in Plasmodium malariae, Malaria Journal, 19: 48.
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Application of different molecular markers in biotechnology

Year 2020, Volume 2, Issue 2, 98 - 113, 26.08.2020
https://doi.org/10.38058/ijsl.770081

Abstract

Several molecular markers have been developed to explore genetic diversity, resistance against biotic/abiotic stress, disease, biomarker and evolutionary relationships in different genomes. These markers could be classified as sequence, hybridisation, PCR and retrotransposon based techniques. In this study, procedure and applications of AFLP (Amplified Fragment Length Polymorphism), ITS (Internal Transcribed Spacer), IRAP (Inter Retrotransposon Amplified Polymorphism), SSR (Simple Sequence Repeats), VNTR (Variable Number Tandem Repeats), SNP (single nucleotide polymorphism), CAPS (Cleaved Amplified Polymorphic Sequences), SCoT (Start Codon Targeted Polymorphism), SSCP (Single Strand Conformational Polymorphism) markers in plant, animal and human genomes were discussed.

References

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  • Amanullah, S., Saroj, A., Osae, B. A., Liu, S., Liu, H. et al. 2020. Detection of putative QTL regions associated with ovary traits in melon using SNP-CAPS markers, Scientia Horticulturae, 270: 109445.
  • Adu, G.B., Awuku, F.J., Amegbor, I.K., Haruna, A., Manigben, K.A. et al. 2019. Genetic characterization and population structure of maize populations using SSR markers, Annals of Agricultural Sciences, 64(1): 47-54.
  • Agarwal, M., Shirvastava, N., Padh, H. 2008. Advances in molecular marker techniques and their applications in plant sciences, Plant Cell Reports, 27: 617-631.
  • Apablaza, P., Brevik, Ø. J., Mjøs, S., Valdebenito, S., Ilardi, P. et al. 2015. Variable Number of Tandem Repeats (VNTR) analysis of Flavobacterium psychrophilum from salmonids in Chile and Norway, BMC Veterinary Research, 11(1): 150.
  • Asadi, A., Ebrahimi, A., Rashidi-Monfared, S., Basiri, M., Akbari-Afjani, J. 2020. Comprehensive functional analysis and mapping of SSR markers in the chickpea genome (Cicer arietinum L.), Computational Biology and Chemistry, 84: 107169.
  • Ayala-Usma, D.A., Danies, G., Myers, K., Bond, M.O., Romero-Navarro, J.A. et al. 2020. Genome-wide association study identifies single nucleotide polymorphism markers associated with mycelial growth (at 15, 20, and 25oC), mefenoxam resistance, and mating type in Phytophthora infestans, Phytopathology, 110(4): 822-833.
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  • Bernard, A., Barreneche, T., Lheureux, F., Dirlewanger, E. 2018. Analysis of genetic diversity and structure in a worldwide walnut (Juglans regia L.) germplasm using SSR markers, PLoS ONE, 13(11): e0208021.
  • Bínová, Z., Korecký, J., Dvořák, J., Bílý, J., Zádrapová, D. et al. 2020. Genetic structure of norway spruce ecotypes studied by SSR markers, Forests, 11(1): 110.
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  • Cao, J., Zhou, Z., Tu, J., Cheng, S., Yao, J. et al. 2019. Genetic diversity and population structure analysis of sand pear (Pyrus pyrifolia) ‘Nakai’ varieties using SSR and AFLP markers, Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 47(3): 970-979.
  • Chen, C.L., Xu, M.L., Wang, C.P., Qiao, G.X., Wang, W.W. et al. 2017. Characterization of the Lycium barbarum fruit transcriptome and development of EST-SSR markers, PLoS ONE, 12: e0187738.
  • Choudhary, K., Verma, A.K., Swaroop, S., Agrawal, N. 2015. A review on the molecular characterization of digenean parasites using molecular markers with special reference to ITS region, Helminthologia, 52(3): 167-187.
  • Collard, B.C., Mackill, D.J. 2009. Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants, Plant Molecular Biology Reporter, 27(1): 86-93.
  • Csencsics, D., Brodbeck, S., Holderegger, R. 2010. Cost-Effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing technology, Journal of Heredity, 101: 789-793.
  • Dumbovic, G., Forcales, S.V., Perucho, M. 2017. Emerging roles of macrosatellite repeats in genome organization and disease development, Epigenetics, 12(7): 515-526.
  • El-Fiki, A., Adly, M. 2019. Genetic variation and molecular characterization in some potato cultivars using random amplified polymorphic DNA and start codon targeted markers, Egyptian Journal of Biotechnology, 59.
  • Etminan, A., Pour-Aboughadareh, A., Mohammadi, R., Ahmadi-Rad, A., Noori, A. et al. 2016. Applicability of start codon targeted (SCoT) and inter-simple sequence repeat (ISSR) markers for genetic diversity analysis in durum wheat genotypes, Biotechnology & Biotechnological Equipment, 30(6): 1075-1081.
  • Fatai, R.B., Akinyemi, M.O., Osaiyuwu, O.H. 2020. In silico analysis of single nucleotide polymorphism in inha gene of sheep and goats, Biotechnology Journal International, 12-21.
  • Fazeli-Nasab, B., Sayyed, R.Z., Farsi, M., Ansari, S., El-Enshasy, H.A. 2020. Genetic assessment of the internal transcribed spacer region (ITS1. 2) in Mangifera indica L. landraces, Physiology and Molecular Biology of Plants, 26(1): 107-117.
  • Gasser, R.B., Hu, M., Chilton, N.B., Campbell, B.E., Jex, A.J. et al. 2006. Single-strand conformation polymorphism (SSCP) for the analysis of genetic variation, Nature protocols, 1(6): 3121.
  • Günaydın, S., Kafkas, S. Characterization of strawberry cultivars by SSR and CAPS Markers. VIII International Strawberry Symposium, 13-17 August 2016, p. 171-178.
  • Ghielmetti, G., Scherrer, S., Friedel, U., Frei, D., Suter, D. et al. 2017. Epidemiological tracing of bovine tuberculosis in Switzerland, multilocus variable number of tandem repeat analysis of Mycobacterium bovis and Mycobacterium caprae, PLoS ONE, 12(2): e0172474.
  • Gholamian, F., Etminan, A., Changizi, M., Khaghani, S., Gomarian, M. 2019. Assessment of genetic diversity in Triticum urartu Thumanjan ex Gandilyan accessions using start codon targeted polymorphism (SCoT) and CAAT-box derived polymorphism (CBDP) markers, Biotechnology & Biotechnological Equipment, 33(1): 1653-1662.
  • Grover, A., Sharma, P.C. 2016. Development and use of molecular markers: past and present, Critical Reviews in Biotechnology, 36(2): 290-302.
  • Guan, C., Chachar, S., Zhang, P., Hu, C., Wang, R. et al. 2020. Inter-and intra-specific genetic diversity in Diospyros using SCoT and IRAP markers, Horticultural Plant Journal, 6(2): 71-80.
  • Hadipour, M., Kazemitabar, S.K., Yaghini, H., Dayani, S. 2020. Genetic diversity and species differentiation of medicinal plant Persian Poppy (Papaver bracteatum L.) using AFLP and ISSR markers, Ecological Genetics and Genomics, 100058.
  • Holasou, H.A., Rahmati, F., Rahmani, F., Imani, M., Talebzadeh, Z. 2019. Elucidate genetic diversity and population structure of bread wheat (Triticum aestivum L.) cultivars using IRAP and REMAP markers, Journal of Crop Science and Biotechnology, 22(2): 139-151.
  • Hu, Y., Li, B.Q., da Jin, Z., He, L.H., Tao, X.X. et al. 2015. Identification of Variable-Number Tandem-Repeat (VNTR) sequences in Acinetobacter pittii and development of an optimized multiple-locus VNTR analysis typing scheme, Biomedical and Environmental Sciences, 28(12): 855-63.
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Details

Primary Language English
Subjects Basic Sciences
Journal Section Review
Authors

Berna KOCAMAN>
AMASYA UNIVERSITY
0000-0002-5578-8697
Türkiye


Sevim TOY This is me
AMASYA UNIVERSITY
0000-0002-6624-3182
Türkiye


Sevgi MARAKLI> (Primary Author)
AMASYA UNIVERSITY
0000-0001-5796-7819
Türkiye

Publication Date August 26, 2020
Published in Issue Year 2020, Volume 2, Issue 2

Cite

Bibtex @review { ijsl770081, journal = {International Journal of Science Letters}, eissn = {2687-4733}, address = {Amasya University, Central Research Laboratory, 05100 İpekköy-AMASYA}, publisher = {Amasya University}, year = {2020}, volume = {2}, number = {2}, pages = {98 - 113}, doi = {10.38058/ijsl.770081}, title = {Application of different molecular markers in biotechnology}, key = {cite}, author = {Kocaman, Berna and Toy, Sevim and Maraklı, Sevgi} }
APA Kocaman, B. , Toy, S. & Maraklı, S. (2020). Application of different molecular markers in biotechnology . International Journal of Science Letters , 2 (2) , 98-113 . DOI: 10.38058/ijsl.770081
MLA Kocaman, B. , Toy, S. , Maraklı, S. "Application of different molecular markers in biotechnology" . International Journal of Science Letters 2 (2020 ): 98-113 <https://dergipark.org.tr/en/pub/ijsl/issue/56491/770081>
Chicago Kocaman, B. , Toy, S. , Maraklı, S. "Application of different molecular markers in biotechnology". International Journal of Science Letters 2 (2020 ): 98-113
RIS TY - JOUR T1 - Application of different molecular markers in biotechnology AU - BernaKocaman, SevimToy, SevgiMaraklı Y1 - 2020 PY - 2020 N1 - doi: 10.38058/ijsl.770081 DO - 10.38058/ijsl.770081 T2 - International Journal of Science Letters JF - Journal JO - JOR SP - 98 EP - 113 VL - 2 IS - 2 SN - -2687-4733 M3 - doi: 10.38058/ijsl.770081 UR - https://doi.org/10.38058/ijsl.770081 Y2 - 2020 ER -
EndNote %0 International Journal of Science Letters Application of different molecular markers in biotechnology %A Berna Kocaman , Sevim Toy , Sevgi Maraklı %T Application of different molecular markers in biotechnology %D 2020 %J International Journal of Science Letters %P -2687-4733 %V 2 %N 2 %R doi: 10.38058/ijsl.770081 %U 10.38058/ijsl.770081
ISNAD Kocaman, Berna , Toy, Sevim , Maraklı, Sevgi . "Application of different molecular markers in biotechnology". International Journal of Science Letters 2 / 2 (August 2020): 98-113 . https://doi.org/10.38058/ijsl.770081
AMA Kocaman B. , Toy S. , Maraklı S. Application of different molecular markers in biotechnology. IJSL. 2020; 2(2): 98-113.
Vancouver Kocaman B. , Toy S. , Maraklı S. Application of different molecular markers in biotechnology. International Journal of Science Letters. 2020; 2(2): 98-113.
IEEE B. Kocaman , S. Toy and S. Maraklı , "Application of different molecular markers in biotechnology", International Journal of Science Letters, vol. 2, no. 2, pp. 98-113, Aug. 2020, doi:10.38058/ijsl.770081