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TUBI (TUrkish Benthic Index): A new biotic index for assessing impacts of organic pollution on benthic communities

Year 2015, Volume: 21 Issue: 2, 135 - 168, 20.09.2015

Abstract

AbstractA new biotic index, TUBI (TUrkish Benthic Index) is proposed here to assess the impacts of organic enrichments on benthic community structures. This new index has two metrics; the Shannon-Weiver's diversity index (metric 1) and the relative abundance of ecological groups (metric 2). The ecological groups of species, which include five categories, were re-organized under three major categories here, namely, sensitive species (including GI and GII), tolerant species (GIII) and opportunistic species (GIV and GV). The metric 2 considers these groups with different weights and eliminates sensitive species in the calculation. Scores of TUBI vary between 0 and 5, and the benthic quality status increases with increasing TUBI scores. Benthic samples collected from Izmir Bay, and the Aegean and Levantine Seas were analyzed by using different biotic indices such as AMBI, M-AMBI, BENTIX, MEDOCC and TUBI, based on the national database for the ecological groups of benthic species. All biotic indices used, with some exceptions, discriminated poor and bad ecological status in the regions. The correlation analysis performed between the total organic carbon in sediment and total inorganic nitrogen in deep water, and biotic indices indicated that TUBI possessed the highest negative correlation values with these environmental variables, therefore better detecting the variability across a gradient of pollution-mediated impacts on benthic communities.

References

  • Albayrak, S., Balkıs, N., Balkıs, H., Zenetos, A, Kurun, A., Karhan, S.Ü., Çağlar, S., Balcı, M. (2010) Golden Horn Estuary: description of the ecosystem and an attempt to assess its ecological quality status using various classification metrics. Med. Mar. Sci. 11: 295-313.
  • Bigot, L., Grémare, A., Amouroux, J.-M., Frouin, P., Maire, O., Gaertner, J.C. (2008) Assessment of the ecological quality status of soft-bottoms in Reunion
  • Borja, A., Franco, J., Pérez, V. (2000) A marine biotic index to establish the ecology quality of soft-bottom benthos within European estuarine coastal environments. Mar. Pollut. Bull. 40: 1100-1114.
  • Borja, A., Miles, A., Occhipinti-Ambrogi, A., Berg, T. (2009) Current status of macroinvertebrate methods used for assessing the quality of European marine waters: implementing the Water Framework Directive. Hydrobiologia 633: 181- 1
  • Çinar, M.E., Bakir, K. (2014). Alien Biotic Index (ALEX) - a new index for assessing impacts of alien species on benthic communities. Mar. Poll. Bull. 87: 171-1
  • Çinar, M.E., Dagli, E. (2013) Polychaetes (Annelida: Polychaeta) from the Aegean and Levantine coasts of Turkey, with descriptions of two new species. J. Nat. Hist. 47: 911-947.
  • Çinar, M.E., Katagan, T., Öztürk, B., Bakir, K., Dagli, E., Açik, S., Dogan, A., Bitlis, B. (2012) Spatio-temporal Distributions of zoobenthos in soft substratum of Izmir Bay (Aegean Sea, eastern Mediterranean), with special emphasis on alien species and ecological quality status. J. Mar. Biol. Ass. U.K. 92: 1457- 14
  • Çinar, M. E., Katagan, T., Öztürk, B., Egemen, Ö., Ergen, Z., Kocatas, A., Önen, M., Kirkim, F., Bakir, K., Kurt, G., Dagli, E., Kaymakçi, A., Açik, S., Dogan, A., Özcan, T. (2006) Temporal changes of soft bottom zoobenthic communities in and around Alsancak Harbor (Izmir Bay, Aegean Sea), with special attention to the autoecology of exotic species. Mar. Ecol. 27: 229-246.
  • Dauvin, J.-C., Ruellet, T., Desroy, N., Janson, A-L. (2007) The ecological quality status of the Bay of Seine and the Seine estuary: use of biotic indices. Mar. Pollut. Bull. 55: 241-257.
  • Dean, H.K. (2008) The use of polychaetes (Annelida) as indicator species of marine pollution: a review. Rev. Biol. Trop. 56: 11-38.
  • Dekos (2014) Marine and Coastal Water Quality Determination and Classification of Project Cases (DeKoS). CTUE 5118703, Report No. CTUE. 155 (final report), February 2014, Gebze-Kocaeli. (in Turkish).
  • Ergen, Z., Çinar, M.E., Dağli, E., Kurt, G. (2006) Seasonal dynamics of soft- bottom polychaetes in Izmir Bay (Aegean Sea, eastern Mediterranean). Sci. Mar. 70S3: 197-207.
  • Fauchald, K., Jumars, P. A. (1979) The diet of worms: a study of polychaete feeding guilds. Oceanogr. Mar. Biol. Ann. Rev. 17: 193-284.
  • Glémarec, M. (1986) Ecological impact of an oil-spill: utilisation of biological indicators. IAWPRC-NERC Conference, July 1985. IAWPRC Journal 18: 203- 2
  • Grassle, J.F., Grassle, J.P. (1974) Opportunistic life histories and genetic systems in marine benthic polychaetes. J. Mar. Res. 32: 253-284.
  • Heip, C. (1995) Eutrophication and zoobenthos dynamics. Ophelia 41: 113-136.
  • Hyland, J., Balthis, L., Karakassis, I., Magni, P., Petrov, A., Shine, J., Vestergaard, O., Warwick, R. (2005) Organic carbon content of sediments as an indicator of stress in the marine benthos. Mar. Ecol. Prog. Ser. 295: 91-103.
  • Kocatas, A., Ergen, Z., Katagan, T. (1985) Changes in the benthic communities due to various pollutants in İzmir Bay (Turkey). Meeting on the Effects of
  • Pollution on Marine Environments, Blanes, FAO, 9: 1-19. Magni, P. (2003) Biological benthic tools as indicators of coastal marine ecosystems health. Chemistry and Ecology 19: 363-372.
  • Marques, J.C., Salas, F., Patricio, J., Teixeira, H., Neto, J.M. (2009) Ecological
  • Indicators for Coastal and Estuarine Environmental Assessment. A User Guide. WIT Press, Boston, 183 pp. Mixuka, I., Borja, A., Bald, J. (2007) Using historical data, expert judgement and multivariate analysis in assessing reference conditions and benthic ecological status, according to the European water framework directive. Mar. Pollut. Bull. 55: 16-29.
  • Pianka, E.R. (1970) On r- and K- Selection. Amer. Natur. 104: 592-597.
  • Pinedo, S., Jordana, E., Salas, F., Subida, M.D., García Adiego, E., Torres, J. (2012) Testing MEDOCC and BOPA indices in shallow soft-bottom communities in the Spanish Mediterranean coastal waters. Ecological Indicators 19: 98-105.
  • Pocklington, P., Wells, P.G. (1992) Polychaetes key taxa for marine environmental quality monitoring. Mar. Pollut. Bull. 24: 593-598.
  • Ponti, M., Pinna, M., Basset, A., Moncheva, S., Trayanova, A., Georgescu, L.P., Beqiraj, S., Orfanidis, S., Abbiati, M. (2008) Quality assessment of
  • Mediterranean and Black Sea transitional waters: comparing responses of benthic biotic indices. Aquat. Conserv.: Mar. Freshwat. Ecosyst. 18: 62-75. Rice, J., Arvanitidis, C., Borja, A., Frid, C., Hiddink, J., Krause, J., Lorance, P., Ragnarsson, S.A., Sköld, M., Trabucco, B. (2010) Marine Strategy Framework
  • Directive. Task Group 6 Report. Seafloor Integrity. JRC Scientific and Technical Reports, 73 pp. Rosenberg, R. (1976) Benthic faunal dynamics during succession following pollution abatement in a Swedish estuary. Oikos 27: 414-427.
  • Simboura, N., Zenetos, A. (2002) Benthic indicators to use in ecological quality classification of Mediterranean soft bottoms marine ecosystems, including a new biotic index. Medit. Mar. Sci. 3: 77-111.
  • Simboura, N., Zenetos, A., Pancucci-Papadopoulou, M.A. (2014) Benthic community indicators over a long period of monitoring (2000-2012) of the Saronikos Gulf, Greece, eastern Mediterranean. Environ. Monit. Assess. 186: 3809-3821.
  • Simonini, R., Grandi, V., Massamba-N’Siala, G., Iotti, M., Montanari, G., Perevedelli, D. (2009) Assessing the ecological status of the north-western
  • Adriatic within the European Water Framework Directive: a comparison of Bentix, AMBI and M-AMBI methods. Mar. Ecol. 30: 241-254. Tsutsumi, H., Fukunaga, S., Fujita, N., Sumida, M. (1990) Relationship between growth of Capitella sp. and organic enrichment of the sediment. Mar. Ecol. Prog. Ser. 63: 157-162.
  • Van Hoey, G., Borja, A. Birchenough, S., Buhl-Mortensen, L., Degraer, S., Fleischer, D., Kerckhof, F., Magni, P., Muxika, I., Reis, H., Schröder, A., Zettler, M.I. (2010) The use of benthic indicators in Europe: from the Water
  • Framework Directive to the Marine Strategy Framework Directive. Mar. Pollut. Bull. 60: 2187-2196.
  • Vrijenhoek, R.C. (1979) Factors affecting clonal diversity and coexistence. Amer. Zool. 19: 787-797.
Year 2015, Volume: 21 Issue: 2, 135 - 168, 20.09.2015

Abstract

References

  • Albayrak, S., Balkıs, N., Balkıs, H., Zenetos, A, Kurun, A., Karhan, S.Ü., Çağlar, S., Balcı, M. (2010) Golden Horn Estuary: description of the ecosystem and an attempt to assess its ecological quality status using various classification metrics. Med. Mar. Sci. 11: 295-313.
  • Bigot, L., Grémare, A., Amouroux, J.-M., Frouin, P., Maire, O., Gaertner, J.C. (2008) Assessment of the ecological quality status of soft-bottoms in Reunion
  • Borja, A., Franco, J., Pérez, V. (2000) A marine biotic index to establish the ecology quality of soft-bottom benthos within European estuarine coastal environments. Mar. Pollut. Bull. 40: 1100-1114.
  • Borja, A., Miles, A., Occhipinti-Ambrogi, A., Berg, T. (2009) Current status of macroinvertebrate methods used for assessing the quality of European marine waters: implementing the Water Framework Directive. Hydrobiologia 633: 181- 1
  • Çinar, M.E., Bakir, K. (2014). Alien Biotic Index (ALEX) - a new index for assessing impacts of alien species on benthic communities. Mar. Poll. Bull. 87: 171-1
  • Çinar, M.E., Dagli, E. (2013) Polychaetes (Annelida: Polychaeta) from the Aegean and Levantine coasts of Turkey, with descriptions of two new species. J. Nat. Hist. 47: 911-947.
  • Çinar, M.E., Katagan, T., Öztürk, B., Bakir, K., Dagli, E., Açik, S., Dogan, A., Bitlis, B. (2012) Spatio-temporal Distributions of zoobenthos in soft substratum of Izmir Bay (Aegean Sea, eastern Mediterranean), with special emphasis on alien species and ecological quality status. J. Mar. Biol. Ass. U.K. 92: 1457- 14
  • Çinar, M. E., Katagan, T., Öztürk, B., Egemen, Ö., Ergen, Z., Kocatas, A., Önen, M., Kirkim, F., Bakir, K., Kurt, G., Dagli, E., Kaymakçi, A., Açik, S., Dogan, A., Özcan, T. (2006) Temporal changes of soft bottom zoobenthic communities in and around Alsancak Harbor (Izmir Bay, Aegean Sea), with special attention to the autoecology of exotic species. Mar. Ecol. 27: 229-246.
  • Dauvin, J.-C., Ruellet, T., Desroy, N., Janson, A-L. (2007) The ecological quality status of the Bay of Seine and the Seine estuary: use of biotic indices. Mar. Pollut. Bull. 55: 241-257.
  • Dean, H.K. (2008) The use of polychaetes (Annelida) as indicator species of marine pollution: a review. Rev. Biol. Trop. 56: 11-38.
  • Dekos (2014) Marine and Coastal Water Quality Determination and Classification of Project Cases (DeKoS). CTUE 5118703, Report No. CTUE. 155 (final report), February 2014, Gebze-Kocaeli. (in Turkish).
  • Ergen, Z., Çinar, M.E., Dağli, E., Kurt, G. (2006) Seasonal dynamics of soft- bottom polychaetes in Izmir Bay (Aegean Sea, eastern Mediterranean). Sci. Mar. 70S3: 197-207.
  • Fauchald, K., Jumars, P. A. (1979) The diet of worms: a study of polychaete feeding guilds. Oceanogr. Mar. Biol. Ann. Rev. 17: 193-284.
  • Glémarec, M. (1986) Ecological impact of an oil-spill: utilisation of biological indicators. IAWPRC-NERC Conference, July 1985. IAWPRC Journal 18: 203- 2
  • Grassle, J.F., Grassle, J.P. (1974) Opportunistic life histories and genetic systems in marine benthic polychaetes. J. Mar. Res. 32: 253-284.
  • Heip, C. (1995) Eutrophication and zoobenthos dynamics. Ophelia 41: 113-136.
  • Hyland, J., Balthis, L., Karakassis, I., Magni, P., Petrov, A., Shine, J., Vestergaard, O., Warwick, R. (2005) Organic carbon content of sediments as an indicator of stress in the marine benthos. Mar. Ecol. Prog. Ser. 295: 91-103.
  • Kocatas, A., Ergen, Z., Katagan, T. (1985) Changes in the benthic communities due to various pollutants in İzmir Bay (Turkey). Meeting on the Effects of
  • Pollution on Marine Environments, Blanes, FAO, 9: 1-19. Magni, P. (2003) Biological benthic tools as indicators of coastal marine ecosystems health. Chemistry and Ecology 19: 363-372.
  • Marques, J.C., Salas, F., Patricio, J., Teixeira, H., Neto, J.M. (2009) Ecological
  • Indicators for Coastal and Estuarine Environmental Assessment. A User Guide. WIT Press, Boston, 183 pp. Mixuka, I., Borja, A., Bald, J. (2007) Using historical data, expert judgement and multivariate analysis in assessing reference conditions and benthic ecological status, according to the European water framework directive. Mar. Pollut. Bull. 55: 16-29.
  • Pianka, E.R. (1970) On r- and K- Selection. Amer. Natur. 104: 592-597.
  • Pinedo, S., Jordana, E., Salas, F., Subida, M.D., García Adiego, E., Torres, J. (2012) Testing MEDOCC and BOPA indices in shallow soft-bottom communities in the Spanish Mediterranean coastal waters. Ecological Indicators 19: 98-105.
  • Pocklington, P., Wells, P.G. (1992) Polychaetes key taxa for marine environmental quality monitoring. Mar. Pollut. Bull. 24: 593-598.
  • Ponti, M., Pinna, M., Basset, A., Moncheva, S., Trayanova, A., Georgescu, L.P., Beqiraj, S., Orfanidis, S., Abbiati, M. (2008) Quality assessment of
  • Mediterranean and Black Sea transitional waters: comparing responses of benthic biotic indices. Aquat. Conserv.: Mar. Freshwat. Ecosyst. 18: 62-75. Rice, J., Arvanitidis, C., Borja, A., Frid, C., Hiddink, J., Krause, J., Lorance, P., Ragnarsson, S.A., Sköld, M., Trabucco, B. (2010) Marine Strategy Framework
  • Directive. Task Group 6 Report. Seafloor Integrity. JRC Scientific and Technical Reports, 73 pp. Rosenberg, R. (1976) Benthic faunal dynamics during succession following pollution abatement in a Swedish estuary. Oikos 27: 414-427.
  • Simboura, N., Zenetos, A. (2002) Benthic indicators to use in ecological quality classification of Mediterranean soft bottoms marine ecosystems, including a new biotic index. Medit. Mar. Sci. 3: 77-111.
  • Simboura, N., Zenetos, A., Pancucci-Papadopoulou, M.A. (2014) Benthic community indicators over a long period of monitoring (2000-2012) of the Saronikos Gulf, Greece, eastern Mediterranean. Environ. Monit. Assess. 186: 3809-3821.
  • Simonini, R., Grandi, V., Massamba-N’Siala, G., Iotti, M., Montanari, G., Perevedelli, D. (2009) Assessing the ecological status of the north-western
  • Adriatic within the European Water Framework Directive: a comparison of Bentix, AMBI and M-AMBI methods. Mar. Ecol. 30: 241-254. Tsutsumi, H., Fukunaga, S., Fujita, N., Sumida, M. (1990) Relationship between growth of Capitella sp. and organic enrichment of the sediment. Mar. Ecol. Prog. Ser. 63: 157-162.
  • Van Hoey, G., Borja, A. Birchenough, S., Buhl-Mortensen, L., Degraer, S., Fleischer, D., Kerckhof, F., Magni, P., Muxika, I., Reis, H., Schröder, A., Zettler, M.I. (2010) The use of benthic indicators in Europe: from the Water
  • Framework Directive to the Marine Strategy Framework Directive. Mar. Pollut. Bull. 60: 2187-2196.
  • Vrijenhoek, R.C. (1979) Factors affecting clonal diversity and coexistence. Amer. Zool. 19: 787-797.
There are 34 citations in total.

Details

Primary Language English
Journal Section Articles
Authors

Melih Ertan Çinar This is me

Kerem Bakır This is me

Bilal Öztürk This is me

Tuncer Katağan This is me

Ertan Dağlı This is me

Şermin Açık This is me

Alper Doğan This is me

Banu Bitlis Bakır This is me

Publication Date September 20, 2015
Published in Issue Year 2015 Volume: 21 Issue: 2

Cite

APA Çinar, M. E. ., Bakır, K. ., Öztürk, B. ., Katağan, T. ., et al. (2015). TUBI (TUrkish Benthic Index): A new biotic index for assessing impacts of organic pollution on benthic communities. Journal of Black Sea / Mediterranean Environment, 21(2), 135-168.
AMA Çinar ME, Bakır K, Öztürk B, Katağan T, Dağlı E, Açık Ş, Doğan A, Bakır BB. TUBI (TUrkish Benthic Index): A new biotic index for assessing impacts of organic pollution on benthic communities. Journal of Black Sea / Mediterranean Environment. August 2015;21(2):135-168.
Chicago Çinar, Melih Ertan, Kerem Bakır, Bilal Öztürk, Tuncer Katağan, Ertan Dağlı, Şermin Açık, Alper Doğan, and Banu Bitlis Bakır. “TUBI (TUrkish Benthic Index): A New Biotic Index for Assessing Impacts of Organic Pollution on Benthic Communities”. Journal of Black Sea / Mediterranean Environment 21, no. 2 (August 2015): 135-68.
EndNote Çinar ME, Bakır K, Öztürk B, Katağan T, Dağlı E, Açık Ş, Doğan A, Bakır BB (August 1, 2015) TUBI (TUrkish Benthic Index): A new biotic index for assessing impacts of organic pollution on benthic communities. Journal of Black Sea / Mediterranean Environment 21 2 135–168.
IEEE M. E. . Çinar, K. . Bakır, B. . Öztürk, T. . Katağan, E. . Dağlı, Ş. . Açık, A. . Doğan, and B. B. . Bakır, “TUBI (TUrkish Benthic Index): A new biotic index for assessing impacts of organic pollution on benthic communities”, Journal of Black Sea / Mediterranean Environment, vol. 21, no. 2, pp. 135–168, 2015.
ISNAD Çinar, Melih Ertan et al. “TUBI (TUrkish Benthic Index): A New Biotic Index for Assessing Impacts of Organic Pollution on Benthic Communities”. Journal of Black Sea / Mediterranean Environment 21/2 (August 2015), 135-168.
JAMA Çinar ME, Bakır K, Öztürk B, Katağan T, Dağlı E, Açık Ş, Doğan A, Bakır BB. TUBI (TUrkish Benthic Index): A new biotic index for assessing impacts of organic pollution on benthic communities. Journal of Black Sea / Mediterranean Environment. 2015;21:135–168.
MLA Çinar, Melih Ertan et al. “TUBI (TUrkish Benthic Index): A New Biotic Index for Assessing Impacts of Organic Pollution on Benthic Communities”. Journal of Black Sea / Mediterranean Environment, vol. 21, no. 2, 2015, pp. 135-68.
Vancouver Çinar ME, Bakır K, Öztürk B, Katağan T, Dağlı E, Açık Ş, Doğan A, Bakır BB. TUBI (TUrkish Benthic Index): A new biotic index for assessing impacts of organic pollution on benthic communities. Journal of Black Sea / Mediterranean Environment. 2015;21(2):135-68.