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Synthesis, Characterization, ADMET prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives

Year 2022, Volume: 12 Issue: 2, 918 - 932, 01.06.2022
https://doi.org/10.21597/jist.1089701

Abstract

It was depicted that the coumarin sulfonate derivatives were synthesized and reported tyrosinase and pancreatic lipase inhibitory effects in silico application. In addition, the coumarin compounds were designed by introducing a sulfonyl group bearing functional groups such as nitro, methoxy, chlorine, methyl, and bearing naphthyl and thiophenyl motifs. The characterizations of the coumarin sulfonate derivatives were carried out utilizing 1H NMR, 13C NMR, and HRMS analyses. Also, pancreatic lipase and tyrosinase inhibitory activities in silico application of the coumarin sulfonate compounds were studied using AutoDock Vina and Chimera software. Moreover, the absorption, distribution, metabolism, excretion, and toxicity properties of the coumarin sulfonate derivatives were performed to explore the properties of target compounds using the preADMET program. Overall, these results exhibited that compound 2c could accomplish as a potential pancreatic lipase inhibitory.

Thanks

The author thanks DAYTAM for the 20% discount on HRMS analyses.

References

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  • Arroo RR, Sari S, Barut B, Özel A, Ruparelia KC, Şöhretoğlu D, 2020. Flavones as tyrosinase inhibitors: kinetic studies in vitro and in silico. Phytochemical Analysis 31(3): 314-321.
  • Ashooriha M, Khoshneviszadeh M, Khoshneviszadeh M, Rafiei A, Kardan M, Yazdian-Robati R, Emami S, 2020. Kojic acid–natural product conjugates as mushroom tyrosinase inhibitors. European Journal of Medicinal Chemistry 201: 112480.
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  • Buldurun K, Turan N, Bursal E, Mantarcı A, Turkan F, Taslimi P, Gülçin İ, 2020. Synthesis, spectroscopic properties, crystal structures, antioxidant activities and enzyme inhibition determination of Co (II) and Fe (II) complexes of Schiff base. Research on Chemical Intermediates 46(1): 283-297.
  • Bursal E, Yılmaz MA, Izol E, Türkan F, Atalar MN, Murahari M, Ahmad M, 2021. Enzyme inhibitory function and phytochemical profile of Inula discoidea using in vitro and in silico methods. Biophysical Chemistry 277: 106629.
  • Carneiro A, Matos MJ, Uriarte E, Santana L, 2021. Trending topics on coumarin and its derivatives in 2020. Molecules 26(2): 501.
  • Cetin A, Bursal E, Türkan F, 2021a. 2-methylindole analogs as cholinesterases and glutathione S-transferase inhibitors: Synthesis, biological evaluation, molecular docking, and pharmacokinetic studies. Arabian Journal of Chemistry 14(12): 103449.
  • Cetin A, Türkan F, Bursal E, Murahari M, 2021b. Synthesis, Characterization, Enzyme Inhibitory Activity, and Molecular Docking Analysis of a New Series of Thiophene-Based Heterocyclic Compounds. Russian Journal of Organic Chemistry 57(4): 598-604.
  • Chen W, Yao S, Wan J, Tian Y, Huang L, Wang S, Zhang X, 2021. BBB-crossing adeno-associated virus vector: An excellent gene delivery tool for CNS disease treatment. Journal of Controlled Release 333: 129-138.
  • Dorababu A, 2022. Pharmacological report of recently designed multifunctional coumarin and coumarin–heterocycle derivatives. Archiv der Pharmazie 355(2): 2100345.
  • El-Gamal MI, Oh CH, 2014. Synthesis, in vitro antiproliferative activity, and in silico studies of fused tricyclic coumarin sulfonate derivatives. European Journal of Medicinal Chemistry 84: 68-76.
  • Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E, Hutchison GR, 2012. Avogadro: an advanced semantic chemical editor, visualization, and analysis platform. Journal of cheminformatics 4(1): 1-17.
  • Hariri R, Saeedi M, Akbarzadeh T, 2021. Naturally occurring and synthetic peptides: Efficient tyrosinase inhibitors. Journal of Peptide Science 27(7): e3329.
  • Huo PC, Hu Q, Shu S, Zhou QH, He RJ, Hou J, Ge GB, 2021. Design, synthesis and biological evaluation of novel chalcone-like compounds as potent and reversible pancreatic lipase inhibitors. Bioorganic & Medicinal Chemistry 29: 115853.
  • Iqbal J, El-Gamal MI, Ejaz SA, Lecka J, Sévigny J, Oh CH, 2018. Tricyclic coumarin sulphonate derivatives with alkaline phosphatase inhibitory effects: In vitro and docking studies. Journal of enzyme inhibition and medicinal chemistry 33(1): 479-484.
  • Korkmaz A, Bursal E, 2022a. Benzothiazole Sulfonate Derivatives Bearing Azomethine: Synthesis, Characterization, Enzyme Inhibition, and Molecular Docking Study. Journal of Molecular Structure 1257: 132641.
  • Korkmaz A, Bursal E, 2022b. An in vitro and in silico study on the synthesis and characterization of novel bis (sulfonate) derivatives as tyrosinase and pancreatic lipase inhibitors. Journal of Molecular Structure 1259: 132734.
  • Lee SK, Kang Y, Chang GS, Lee IH, Park SH, Park J, 2017. Bioinformatics and Molecular Design Research Center. Yonsei University, Seoul https://preadmet. bmdrc. kr.
  • Li Y, Xu Y, Pan C, Ren Z, Yang X, 2020. TRIF is essential for the anti-inflammatory effects of Astragalus polysaccharides on LPS-infected Caco2 cells. International Journal of Biological Macromolecules 159: 832-838.
  • Li Z, Kong D, Liu Y, Li M, 2022. Pharmacological perspectives and molecular mechanisms of coumarin derivatives against virus disease. Genes & Diseases 9(1): 80-94.
  • Molinspiration C, 2011. Calculation of molecular properties and bioactivity score. http://www. molinspiration. com/cgi-bin/properties.
  • Moussa G, Alaaeddine R, Alaeddine LM, Nassra R, Belal AS, Ismail A, Hazzaa A, 2018. Novel click modifiable thioquinazolinones as anti-inflammatory agents: Design, synthesis, biological evaluation and docking study. European journal of medicinal chemistry 144: 635-650.
  • Nune, AMV, de Andrade FDCP, Filgueiras LA, de Carvalho Maia OA, Cunha RL, Rodezno SV, Mendes AN, 2020. preADMET analysis and clinical aspects of dogs treated with the Organotellurium compound RF07: A possible control for canine visceral leishmaniasis?. Environmental Toxicology and Pharmacology 80: 103470.
  • Oja M, Maran U, 2018. pH-permeability profiles for drug substances: Experimental detection, comparison with human intestinal absorption and modelling. European Journal of Pharmaceutical Sciences 123: 429-440.
  • Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE, 2004. UCSF Chimera—a visualization system for exploratory research and analysis. Journal of computational chemistry 25(13): 1605-1612.
  • Salar U, Khan KM, Jabeen A, Faheem A, Fakhri MI, Saad SM, Hameed A, 2016. Coumarin sulfonates: As potential leads for ROS inhibition. Bioorganic chemistry 69: 37-47.
  • Schrodinger, L. L. C. 2021. The PyMOL molecular graphics system. Version, 2(5): 1.
  • Sultana R, Alashi AM, Islam K, Saifullah M, Haque CE, Aluko RE, 2020. Inhibitory activities of Polyphenolic extracts of Bangladeshi vegetables against α-amylase, α-glucosidase, pancreatic lipase, renin, and angiotensin-converting enzyme. Foods 9(7): 844.
  • Taslimi P, Türkan F, Cetin A, Burhan H, Karaman M, Bildirici I, Şen F, 2019. Pyrazole [3, 4-d] pyridazine derivatives: Molecular docking and explore of acetylcholinesterase and carbonic anhydrase enzymes inhibitors as anticholinergics potentials. Bioorganic Chemistry 92: 103213.
  • Tolba M, El-Dean A, Geies A, Radwan S, Zaki R, Sayed M, Abdel-Raheem S, 2022. An overview on synthesis and reactions of coumarin based compounds. Current Chemistry Letters 11(1): 29-42.
  • Trott O, Olson AJ, 2009. Software news and update AutoDock Vina: improving the speed and accuracy of docking with a new scoring function. Efficient Optimization, and Multithreading. Journal of computational chemistry 31: 455-461.
  • Turkan F, Çetin A, Taslimi P, Karaman M, Gulçin İ, 2019. Synthesis, biological evaluation and molecular docking of novel pyrazole derivatives as potent carbonic anhydrase and acetylcholinesterase inhibitors. Bioorganic chemistry 86: 420-427.
  • Whitty A, Viarengo LA, Zhong M, 2017. Progress towards the broad use of non-peptide synthetic macrocycles in drug discovery. Organic & Biomolecular Chemistry 15(37): 7729-7735.
  • Xu Z, Chen Q, Zhang Y, Liang C, 2021. Coumarin-based derivatives with potential anti-HIV activity. Fitoterapia 150: 104863.
  • Zhang Y, Fu X, Yan Y, Liu J, 2020. Microwave‐assisted synthesis and biological evaluation of new thiazolylhydrazone derivatives as tyrosinase inhibitors and antioxidants. Journal of Heterocyclic Chemistry 57(3): 991-1002.
Year 2022, Volume: 12 Issue: 2, 918 - 932, 01.06.2022
https://doi.org/10.21597/jist.1089701

Abstract

References

  • Alyar S, Şen T, Özmen ÜÖ, Alyar H, Adem Ş, Şen C, 2019. Synthesis, spectroscopic characterizations, enzyme inhibition, molecular docking study, and DFT calculations of new Schiff bases of sulfa drugs. Journal of Molecular Structure 1185: 416-424.
  • Arroo RR, Sari S, Barut B, Özel A, Ruparelia KC, Şöhretoğlu D, 2020. Flavones as tyrosinase inhibitors: kinetic studies in vitro and in silico. Phytochemical Analysis 31(3): 314-321.
  • Ashooriha M, Khoshneviszadeh M, Khoshneviszadeh M, Rafiei A, Kardan M, Yazdian-Robati R, Emami S, 2020. Kojic acid–natural product conjugates as mushroom tyrosinase inhibitors. European Journal of Medicinal Chemistry 201: 112480.
  • Biovia DS, 2021. Discovery studio visualizer. San Diego, CA, USA, 936.
  • Buldurun K, Turan N, Bursal E, Mantarcı A, Turkan F, Taslimi P, Gülçin İ, 2020. Synthesis, spectroscopic properties, crystal structures, antioxidant activities and enzyme inhibition determination of Co (II) and Fe (II) complexes of Schiff base. Research on Chemical Intermediates 46(1): 283-297.
  • Bursal E, Yılmaz MA, Izol E, Türkan F, Atalar MN, Murahari M, Ahmad M, 2021. Enzyme inhibitory function and phytochemical profile of Inula discoidea using in vitro and in silico methods. Biophysical Chemistry 277: 106629.
  • Carneiro A, Matos MJ, Uriarte E, Santana L, 2021. Trending topics on coumarin and its derivatives in 2020. Molecules 26(2): 501.
  • Cetin A, Bursal E, Türkan F, 2021a. 2-methylindole analogs as cholinesterases and glutathione S-transferase inhibitors: Synthesis, biological evaluation, molecular docking, and pharmacokinetic studies. Arabian Journal of Chemistry 14(12): 103449.
  • Cetin A, Türkan F, Bursal E, Murahari M, 2021b. Synthesis, Characterization, Enzyme Inhibitory Activity, and Molecular Docking Analysis of a New Series of Thiophene-Based Heterocyclic Compounds. Russian Journal of Organic Chemistry 57(4): 598-604.
  • Chen W, Yao S, Wan J, Tian Y, Huang L, Wang S, Zhang X, 2021. BBB-crossing adeno-associated virus vector: An excellent gene delivery tool for CNS disease treatment. Journal of Controlled Release 333: 129-138.
  • Dorababu A, 2022. Pharmacological report of recently designed multifunctional coumarin and coumarin–heterocycle derivatives. Archiv der Pharmazie 355(2): 2100345.
  • El-Gamal MI, Oh CH, 2014. Synthesis, in vitro antiproliferative activity, and in silico studies of fused tricyclic coumarin sulfonate derivatives. European Journal of Medicinal Chemistry 84: 68-76.
  • Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E, Hutchison GR, 2012. Avogadro: an advanced semantic chemical editor, visualization, and analysis platform. Journal of cheminformatics 4(1): 1-17.
  • Hariri R, Saeedi M, Akbarzadeh T, 2021. Naturally occurring and synthetic peptides: Efficient tyrosinase inhibitors. Journal of Peptide Science 27(7): e3329.
  • Huo PC, Hu Q, Shu S, Zhou QH, He RJ, Hou J, Ge GB, 2021. Design, synthesis and biological evaluation of novel chalcone-like compounds as potent and reversible pancreatic lipase inhibitors. Bioorganic & Medicinal Chemistry 29: 115853.
  • Iqbal J, El-Gamal MI, Ejaz SA, Lecka J, Sévigny J, Oh CH, 2018. Tricyclic coumarin sulphonate derivatives with alkaline phosphatase inhibitory effects: In vitro and docking studies. Journal of enzyme inhibition and medicinal chemistry 33(1): 479-484.
  • Korkmaz A, Bursal E, 2022a. Benzothiazole Sulfonate Derivatives Bearing Azomethine: Synthesis, Characterization, Enzyme Inhibition, and Molecular Docking Study. Journal of Molecular Structure 1257: 132641.
  • Korkmaz A, Bursal E, 2022b. An in vitro and in silico study on the synthesis and characterization of novel bis (sulfonate) derivatives as tyrosinase and pancreatic lipase inhibitors. Journal of Molecular Structure 1259: 132734.
  • Lee SK, Kang Y, Chang GS, Lee IH, Park SH, Park J, 2017. Bioinformatics and Molecular Design Research Center. Yonsei University, Seoul https://preadmet. bmdrc. kr.
  • Li Y, Xu Y, Pan C, Ren Z, Yang X, 2020. TRIF is essential for the anti-inflammatory effects of Astragalus polysaccharides on LPS-infected Caco2 cells. International Journal of Biological Macromolecules 159: 832-838.
  • Li Z, Kong D, Liu Y, Li M, 2022. Pharmacological perspectives and molecular mechanisms of coumarin derivatives against virus disease. Genes & Diseases 9(1): 80-94.
  • Molinspiration C, 2011. Calculation of molecular properties and bioactivity score. http://www. molinspiration. com/cgi-bin/properties.
  • Moussa G, Alaaeddine R, Alaeddine LM, Nassra R, Belal AS, Ismail A, Hazzaa A, 2018. Novel click modifiable thioquinazolinones as anti-inflammatory agents: Design, synthesis, biological evaluation and docking study. European journal of medicinal chemistry 144: 635-650.
  • Nune, AMV, de Andrade FDCP, Filgueiras LA, de Carvalho Maia OA, Cunha RL, Rodezno SV, Mendes AN, 2020. preADMET analysis and clinical aspects of dogs treated with the Organotellurium compound RF07: A possible control for canine visceral leishmaniasis?. Environmental Toxicology and Pharmacology 80: 103470.
  • Oja M, Maran U, 2018. pH-permeability profiles for drug substances: Experimental detection, comparison with human intestinal absorption and modelling. European Journal of Pharmaceutical Sciences 123: 429-440.
  • Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE, 2004. UCSF Chimera—a visualization system for exploratory research and analysis. Journal of computational chemistry 25(13): 1605-1612.
  • Salar U, Khan KM, Jabeen A, Faheem A, Fakhri MI, Saad SM, Hameed A, 2016. Coumarin sulfonates: As potential leads for ROS inhibition. Bioorganic chemistry 69: 37-47.
  • Schrodinger, L. L. C. 2021. The PyMOL molecular graphics system. Version, 2(5): 1.
  • Sultana R, Alashi AM, Islam K, Saifullah M, Haque CE, Aluko RE, 2020. Inhibitory activities of Polyphenolic extracts of Bangladeshi vegetables against α-amylase, α-glucosidase, pancreatic lipase, renin, and angiotensin-converting enzyme. Foods 9(7): 844.
  • Taslimi P, Türkan F, Cetin A, Burhan H, Karaman M, Bildirici I, Şen F, 2019. Pyrazole [3, 4-d] pyridazine derivatives: Molecular docking and explore of acetylcholinesterase and carbonic anhydrase enzymes inhibitors as anticholinergics potentials. Bioorganic Chemistry 92: 103213.
  • Tolba M, El-Dean A, Geies A, Radwan S, Zaki R, Sayed M, Abdel-Raheem S, 2022. An overview on synthesis and reactions of coumarin based compounds. Current Chemistry Letters 11(1): 29-42.
  • Trott O, Olson AJ, 2009. Software news and update AutoDock Vina: improving the speed and accuracy of docking with a new scoring function. Efficient Optimization, and Multithreading. Journal of computational chemistry 31: 455-461.
  • Turkan F, Çetin A, Taslimi P, Karaman M, Gulçin İ, 2019. Synthesis, biological evaluation and molecular docking of novel pyrazole derivatives as potent carbonic anhydrase and acetylcholinesterase inhibitors. Bioorganic chemistry 86: 420-427.
  • Whitty A, Viarengo LA, Zhong M, 2017. Progress towards the broad use of non-peptide synthetic macrocycles in drug discovery. Organic & Biomolecular Chemistry 15(37): 7729-7735.
  • Xu Z, Chen Q, Zhang Y, Liang C, 2021. Coumarin-based derivatives with potential anti-HIV activity. Fitoterapia 150: 104863.
  • Zhang Y, Fu X, Yan Y, Liu J, 2020. Microwave‐assisted synthesis and biological evaluation of new thiazolylhydrazone derivatives as tyrosinase inhibitors and antioxidants. Journal of Heterocyclic Chemistry 57(3): 991-1002.
There are 36 citations in total.

Details

Primary Language English
Journal Section Kimya / Chemistry
Authors

Adem Korkmaz 0000-0002-0345-5794

Early Pub Date May 31, 2022
Publication Date June 1, 2022
Submission Date March 18, 2022
Acceptance Date April 6, 2022
Published in Issue Year 2022 Volume: 12 Issue: 2

Cite

APA Korkmaz, A. (2022). Synthesis, Characterization, ADMET prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives. Journal of the Institute of Science and Technology, 12(2), 918-932. https://doi.org/10.21597/jist.1089701
AMA Korkmaz A. Synthesis, Characterization, ADMET prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives. J. Inst. Sci. and Tech. June 2022;12(2):918-932. doi:10.21597/jist.1089701
Chicago Korkmaz, Adem. “Synthesis, Characterization, ADMET Prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives”. Journal of the Institute of Science and Technology 12, no. 2 (June 2022): 918-32. https://doi.org/10.21597/jist.1089701.
EndNote Korkmaz A (June 1, 2022) Synthesis, Characterization, ADMET prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives. Journal of the Institute of Science and Technology 12 2 918–932.
IEEE A. Korkmaz, “Synthesis, Characterization, ADMET prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives”, J. Inst. Sci. and Tech., vol. 12, no. 2, pp. 918–932, 2022, doi: 10.21597/jist.1089701.
ISNAD Korkmaz, Adem. “Synthesis, Characterization, ADMET Prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives”. Journal of the Institute of Science and Technology 12/2 (June 2022), 918-932. https://doi.org/10.21597/jist.1089701.
JAMA Korkmaz A. Synthesis, Characterization, ADMET prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives. J. Inst. Sci. and Tech. 2022;12:918–932.
MLA Korkmaz, Adem. “Synthesis, Characterization, ADMET Prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives”. Journal of the Institute of Science and Technology, vol. 12, no. 2, 2022, pp. 918-32, doi:10.21597/jist.1089701.
Vancouver Korkmaz A. Synthesis, Characterization, ADMET prediction, and Molecular Docking Studies of Novel Coumarin Sulfonate Derivatives. J. Inst. Sci. and Tech. 2022;12(2):918-32.