Research Article
BibTex RIS Cite

Türkiye Mikobiyotası İçin Yeni Kayıt Gyromitra’nın Morfolojik ve Filogenetik Olarak Ortaya Çıkarılması

Year 2018, Volume: 9 Issue: 2, 176 - 181, 25.10.2018

Abstract

Bu çalışmada, Discinaceae ailesine ait olan Gyromitra
brunnea
Underw. Türkiye için ilk kez kaydedilmiştir. Hem morfolojik hem de
moleküler veriler kullanılarak iki örnek tanımlanmıştır. Rapor edilen yeni
kayıt türün kısa açıklaması, makro ve mikromorfolojiyle ilgili fotoğraflar ile
birlikte verilmiş ve kısaca tartışılmıştır. Ek olarak, Gyromitra brunnea'nın filogenetik konumu, 28S (LSU) rRNA gen
dizisine dayalı olarak oluşturulan filogenetik ağaçta gösterilmiştir.

References

  • Abbott, S.P., Currah S., The Helvellaceae: systematic revision and occurrence in northern and Northwestern North America. Mycotaxon 62:1–125 (1997).
  • Asemaninejad, A., Weerasuriya, N., Gloor, G.B., Lindo, Z., Thorn, R.G., New Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA. PLoS ONE 11(7): e0159043 (2016). doi:10.1371/journal.pone.0159043
  • Doyle, J.J., Doyle, J.L., A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin. 19, 11-15 (1987).Fries, E.M., Systema mycologicum. Vol. 2. Geifswald. 620 p (1823).
  • Hansen, K., Pfister, D.H., Systematics of the Pezizomycetes--the operculate discomycetes. Mycologia, 98 (6): 1029–40 (2006).
  • Harmaja, H., A wider and more natural concept of the genus Gyromitra Fr. Karstenia 9:9–12 (1969).
  • Index Fungorum, http://www.indexfungorum.org/names/Names.asp, last accession: 17 May 2017.
  • Kirk, P.M., Cannon, P.F., Minter, D.W., Stalpers, J.A., Dictionary of the Fungi. 10th ed. Wallingford: CABI. p.512. UK (2008).
  • Kuo, M. 2012. Gyromitra brunnea. Retrieved from the MushroomExpert.Com Web site: http://www.mushroomexpert.com/gyromitra_brunnea.html (accessed: 04.04.18) Liu, K., Liu, L., Porras-Alfaro, A., Kuske, C.R., Eichorst, S.A., Xie, G., Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes. Applied and Environmental Microbiology, 78 (5): 1523–1533 (2012).
  • McKnignt, K.H., McKnignt, V.B., A Field Guide to Mushrooms: North America. Houghton Mifflin Harcourt, United States (1987).
  • Methven, A.S. Zelski, S.E. Miller, A.N., A molecular phylogenetic assessment of the genus Gyromitra in North America. Mycologia, 105(5), 1306–1314 (2013).
  • Mycobank database, Discina brunnea, http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank&Rec=221484&Fields=All, (last accession: 10.03.2018).
  • Mycobank database, Discina, http://www.mycobank.org/BioloMICS.aspx?TableKey=14682616000000067&Rec=57997&Fields=All, (last accession: 17.03.2018).
  • Raja, H.A. Miller, A.N. Pearce, C.J. Oberlies, N.H., Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community. J. Nat. Prod. 2017, 80, 756−770 (2017), DOI: 10.1021/acs.jnatprod.6b01085
  • Sesli E., Denchev C.M. Onward (Continuously Updated). Mycotaxon Webpage. Available online at http://www. mycotaxon.com/resources/weblists.html (2014).Solak M.H., Işıloğlu M, Kalmış E., Allı H., Macrofungi of Turkey. Checklist. İzmir, Turkey: Üniversiteliler Ofset (2015).
  • Stielow, J.B., Lévesque, C.A., Seifert, K.A., Meyer ,W., Irinyi, L., Smits, D., Renfurm, R., Verkley, G.J.M., Groenewald, M., Chaduli, D., One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. Persoonia 35, 242–263 (2015).
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., M., Kumar, S., MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Mol. Biol. Evol., 30(12): 2725–2729 (2013).
  • Undan, J.Q., Alfonso, D.O., Dulay, R.M., Leon, A.M., Kalaw, S.P. Undan J.R., Reyes, R.G., Molecular identification and phylogeny of different macrofungi in Mt. Bangkay, Cuyapo, Nueva Ecija, Philippines based on ITS nrDNA region. Advances in Environmental Biology, 10(12) December 2016, Pages: 35-42 (2016).
  • Van Vooren, N., Moreau, P.A., Essai taxinomique sur le genre Gyromitra Fr. Sensu lato (Pezizales), 1. Introductionet systématique. Ascomycete.org 1(1): 3-6 (2009).

Morphology and Phylogeny Reveal a New Record Gyromitra for Turkish Mycobiota

Year 2018, Volume: 9 Issue: 2, 176 - 181, 25.10.2018

Abstract

In the current study, Gyromitra brunnea Underw. belonging to the family Discinaceae was recorded for the first
time from Turkey. Two candidate samples were
described
by using both morphological and molecular data.
Short description of the
newly reported species was given together with its photographs related to macro
and micromorphologies and discussed briefly
. Additionally, phylogenetic
position of Gyromitra brunnea was
indicated in the phylogenetic tree constructed based on the sequence of 28S
(LSU) rRNA gene.

References

  • Abbott, S.P., Currah S., The Helvellaceae: systematic revision and occurrence in northern and Northwestern North America. Mycotaxon 62:1–125 (1997).
  • Asemaninejad, A., Weerasuriya, N., Gloor, G.B., Lindo, Z., Thorn, R.G., New Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA. PLoS ONE 11(7): e0159043 (2016). doi:10.1371/journal.pone.0159043
  • Doyle, J.J., Doyle, J.L., A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin. 19, 11-15 (1987).Fries, E.M., Systema mycologicum. Vol. 2. Geifswald. 620 p (1823).
  • Hansen, K., Pfister, D.H., Systematics of the Pezizomycetes--the operculate discomycetes. Mycologia, 98 (6): 1029–40 (2006).
  • Harmaja, H., A wider and more natural concept of the genus Gyromitra Fr. Karstenia 9:9–12 (1969).
  • Index Fungorum, http://www.indexfungorum.org/names/Names.asp, last accession: 17 May 2017.
  • Kirk, P.M., Cannon, P.F., Minter, D.W., Stalpers, J.A., Dictionary of the Fungi. 10th ed. Wallingford: CABI. p.512. UK (2008).
  • Kuo, M. 2012. Gyromitra brunnea. Retrieved from the MushroomExpert.Com Web site: http://www.mushroomexpert.com/gyromitra_brunnea.html (accessed: 04.04.18) Liu, K., Liu, L., Porras-Alfaro, A., Kuske, C.R., Eichorst, S.A., Xie, G., Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes. Applied and Environmental Microbiology, 78 (5): 1523–1533 (2012).
  • McKnignt, K.H., McKnignt, V.B., A Field Guide to Mushrooms: North America. Houghton Mifflin Harcourt, United States (1987).
  • Methven, A.S. Zelski, S.E. Miller, A.N., A molecular phylogenetic assessment of the genus Gyromitra in North America. Mycologia, 105(5), 1306–1314 (2013).
  • Mycobank database, Discina brunnea, http://www.mycobank.org/BioloMICS.aspx?Table=Mycobank&Rec=221484&Fields=All, (last accession: 10.03.2018).
  • Mycobank database, Discina, http://www.mycobank.org/BioloMICS.aspx?TableKey=14682616000000067&Rec=57997&Fields=All, (last accession: 17.03.2018).
  • Raja, H.A. Miller, A.N. Pearce, C.J. Oberlies, N.H., Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community. J. Nat. Prod. 2017, 80, 756−770 (2017), DOI: 10.1021/acs.jnatprod.6b01085
  • Sesli E., Denchev C.M. Onward (Continuously Updated). Mycotaxon Webpage. Available online at http://www. mycotaxon.com/resources/weblists.html (2014).Solak M.H., Işıloğlu M, Kalmış E., Allı H., Macrofungi of Turkey. Checklist. İzmir, Turkey: Üniversiteliler Ofset (2015).
  • Stielow, J.B., Lévesque, C.A., Seifert, K.A., Meyer ,W., Irinyi, L., Smits, D., Renfurm, R., Verkley, G.J.M., Groenewald, M., Chaduli, D., One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. Persoonia 35, 242–263 (2015).
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., M., Kumar, S., MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Mol. Biol. Evol., 30(12): 2725–2729 (2013).
  • Undan, J.Q., Alfonso, D.O., Dulay, R.M., Leon, A.M., Kalaw, S.P. Undan J.R., Reyes, R.G., Molecular identification and phylogeny of different macrofungi in Mt. Bangkay, Cuyapo, Nueva Ecija, Philippines based on ITS nrDNA region. Advances in Environmental Biology, 10(12) December 2016, Pages: 35-42 (2016).
  • Van Vooren, N., Moreau, P.A., Essai taxinomique sur le genre Gyromitra Fr. Sensu lato (Pezizales), 1. Introductionet systématique. Ascomycete.org 1(1): 3-6 (2009).
There are 18 citations in total.

Details

Primary Language English
Journal Section MYCOLOGY
Authors

Ayten Dizkırıcı

İsmail Acar

Ayşenur Kalmer

Yusuf Uzun

Publication Date October 25, 2018
Published in Issue Year 2018 Volume: 9 Issue: 2

Cite

APA Dizkırıcı, A., Acar, İ., Kalmer, A., Uzun, Y. (2018). Morphology and Phylogeny Reveal a New Record Gyromitra for Turkish Mycobiota. Mantar Dergisi, 9(2), 176-181. https://doi.org/10.30708/mantar.427101

The works submitted to our journals are first judged grammatically. After this phase, articles are sent two reviewers. If necessary, the third reviewer is assessed. In the publication of works, a decision is made by evaluating the level of contribution to science and readers within the criteria specified in the writing rules. Reviewers are requested to submit their assessments within 30 days at the latest. The reviewers' evaluations and the answers to these evaluations are reviewed by the editor and it is decided whether the work will be published or not.

International Peer Reviewed Journal

The journal doesn’t have APC or any submission charges

Creative Commons Lisansı
This work is licensed under a Creative Commons Attribution 4.0 License