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Determination of CAST/MspI Polymorphism in Cattle by PCR-RFLP Method

Year 2024, Volume: 38 Issue: 2, 231 - 236, 22.08.2024

Abstract

The calpastatin (CAST) gene is one of the genes associated with meat quality. Studies have shown that this gene is associated with quality traits such as body weight gain, carcass yield, meat tenderness and fat content in meat. In this study, the polymorphism of the CAST gene was determined using the PCR-RFLP method in Holstein, Simmental and Brown Swiss cattle. As a result of genotyping, three genotypes (MM, MN and NN) and two alleles (M and N) were determined. It was found that the MM genotype and the M allele had the highest frequency in all breeds examined, while the NN genotype had the lowest frequency. The NN genotype was only found in the Brown Swiss breed. All Simmental animals used in the study belonged to the MM genotype.

References

  • Ardicli S, Dincel D, Samli H, Balci F (2017). Effects of polymorphisms at LEP, CAST, CAPN1, GHR, FABP4 and DGAT1 genes on fattening performance and carcass traits in Simmental bulls. Archives Animal Breeding 60(2): 61-70.
  • Ardıçlı S, Şamlı H, Dinçel T, Soyudal B, Balcı F (2017). Individual and combined effects of CAPN1, CAST, LEP and GHR gene polymorphisms on carcass characteristics and meat quality in Holstein bulls.
  • Asadi N, Nanekarani S, Khederzadeh S (2014). Genotypic frequency of calpastatin gene in lori sheep by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. African Journal of Biotechnology 13(19): 1952-1954.
  • Avanus K (2015). Genetic variability of CAST gene in native sheep breeds of Turkey. Kafkas Üniversitesi Veteriner Fakültesi Dergisi 21(6).
  • Bai Y, Hou C, Huang C, Fang F, Dong Y, Li X & Zhang D (2023). Phosphorylation of Calpastatin Negatively Regulates the Activity of Calpain. Life, 13(3), 854.
  • Balcıoğlu M, Karslı T, Şahin E, Ulutaş Z, Aksoy Y (2014). Türkiye’de Yetiştirilen Bazı Yerli Koyun Irklarında Kalpastatin (CAST) Geni Polimorfizminin PCR-RFLP Yöntemiyle Belirlenmesi. Journal of Agricultural Sciences 20(4): 427-433.
  • Bayraktar M, Shoshin O (2022). Association between CAST and MSTN gene polymorphisms with growth traits in Awassi sheep. Kuwait Journal of Science 49(2).
  • Bozhilova-Sakova M, Dimitrova I (2021). Genetic diversity of calpastatin gene and its association with some biochemical parameters in sheep. Journal of BioScience and Biotechnology 10(2): 99-102.
  • Casas E, Kehrli JME (2016). A review of selected genes with known effects on performance and health of cattle. Frontiers in Veterinary Science 3: 113.
  • Chung H, Davis M (2012). Effects of genetic variants for the calpastatin gene on calpastatin activity and meat tenderness in Hanwoo (Korean cattle). Meat Science 90(3): 711-714.
  • Curi RA, Chardulo LAL, Giusti J, Silveira AC, Martins CL, de Oliveira HN (2010). Assessment of GH1, CAPN1 and CAST polymorphisms as markers of carcass and meat traits in Bos indicus and Bos taurus–Bos indicus cross beef cattle. Meat Science 86(4): 915-920.
  • Curi RA, Chardulo LAL, Mason M, Arrigoni M, Silveira AC, De Oliveira H (2009). Effect of single nucleotide polymorphisms of CAPN1 and CAST genes on meat traits in Nellore beef cattle (Bos indicus) and in their crosses with Bos taurus. Animal Genetics 40(4): 456-462.
  • Curi RA, Chardulo LAL, Silveira AC, Oliveira HNd (2008). Alternative genotyping method for the single nucleotide polymorphism A2959G (AF159246) of the bovine CAST gene. Pesquisa Agropecuária Brasileira 43: 657-659.
  • Esteves C, do Livramento K, Paiva L, Peconick A, Garcia I, Garbossa CAP, Cardoso T, Faria P (2020). Polymorphism of CAST and GDF-8 genes and association with physical-chemical parameters of sheep meat. Genetics and Molecular Research 19(3): 1-12.
  • Gorlov IF, Shirokova NV, Randelin AV, Voronkova VN, Mosolova NI, Zlobina EY, Kolosov YA, Bakoev NF, Leonova MA, Bakoev SY (2016). CAST/MspI gene polymorphism and its impact on growth traits of Soviet Merinoand Salsk sheep breeds in the South European part of Russia. Turkish Journal of Veterinary & Animal Sciences 40(4): 399-405.
  • Guroff G (1964). A neutral, calcium-activated proteinase from the soluble fraction of rat brain. Journal of Biological Chemistry 239(1): 149-155.
  • Huff-Lonergan E, Mitsuhashi T, Beekman DD, Parrish Jr FC, Olson DG & Robson RM (1996). Proteolysis of specific muscle structural proteins by µ-calpain at low pH and temperature is similar to degradation in postmortem bovine muscle. Journal of Animal Science, 74(5): 993-1008.
  • Ibrahim WI, Kali A (2017). Effect of Polymorphism of Calpastatin gene, Age on meat Tenderness for Carcasses in Local Awassi sheep. Egyptian Journal of Sheep and Goats Sciences 12(2): 1-10.
  • Juszczuk-Kubiak E, Wyszyńska-Koko J, Wicińska K, Rosochacki S (2008). A novel polymorphisms in intron 12 of the bovine calpastatin gene. Molecular Biology Reports 35: 29-35.
  • Kolosov Y, Kolosov A, Shirokova N, Kobyakova M, Osepchuk D, Kulikova A, Aboneev V (2021). Effect of the Cast Gene on Sheep Meat Qualities. International Scientific Conference Fundamental and Applied Scientific Research in the Development of Agriculture in the Far East,
  • Kotova IM, Pestereva NS, Traktirov DS, Absalyamova MT, Karpenko MN (2023). Functions and distribution of calpain-calpastatin system components in brain during mammal ontogeny. Biochimica et Biophysica Acta (BBA)-General Subjects 130345.
  • Machado AL, Meira AN, Muniz EN, Azevedo HC, Coutinho LL, Mourão GB, Pedrosa VB, Pinto LFB (2020). Single Loci and Haplotypes in and Genes are Associated with Growth, Biometrics, and Carcass Traits in Santa Inês Sheep. Annals of Animal Science 20(2): 465-483.
  • Miller SA, Dykes DD, Polesky H (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16(3): 1215.
  • Muhana KH, Jaffar AA, Al Qasimi RHH (2021). Relationship between calpastatin gene polymorphism and production traits in Awassi sheep in Iraq. Indian Journal of Ecology 48: 251-255.
  • Munekata PE, Pateiro M, López-Pedrouso M, Gagaoua M Lorenzo JM (2021). Foodomics in meat quality. Current Opinion in Food Science 38: 79-85.
  • Muroya S, Neath KE, Nakajima I, Oe M, Shibata M, Ojima K, Chikuni K (2012). Differences in mRNA expression of calpains, calpastatin isoforms and calpain/calpastatin ratios among bovine skeletal muscles. Animal Science Journal 83(3): 252-259.
  • Nattrass G, Cafe L, McIntyre B, Gardner G, McGilchrist P, Robinson D, Wang Y, Pethick D, Greenwood P (2014). A post-transcriptional mechanism regulates calpastatin expression in bovine skeletal muscle. Journal of Animal Science, 92(2): 443-455.
  • Ramadevi B, Kumari BP, Sudhakar K, Gangaraju G, Vinod U (2020). Polymorphism of the Ovine Calpastatin (CAST) gene and its association with productive traits in Nellore sheep. Journal of Animal Research,, 10(6): 881-887.
  • Saeed-ul-Hassan K, Riaz MN, Ghaffar A, Khan MFU (2012). Calpastatin (CAST) gene polymorphism and its association with average daily weight gain in Balkhi and Kajli sheep and Beetal goat breeds. Pakistan Journal of Zoology 44(2).
  • Schenkel F, Miller S, Jiang Z, Mandell I, Ye X, Li H, Wilton J (2006). Association of a single nucleotide polymorphism in the calpastatin gene with carcass and meat quality traits of beef cattle. Journal of Animal Science 84(2): 291-299.
  • Suleman M, Khan SU, Riaz MN, Yousaf M, Shah A, Ishaq R (2012). Calpastatin (CAST) gene polymorphism in Kajli, Lohi and Thalli sheep breeds. African Journal of Biotechnology 11(47): 10655-10660.
  • Tahmoorespur M, Nassiry MR, Najafi MF, Ghovvati S (2007). Genetic polymorphism at the candidate gene in Iranian Sistani cattle (Bos indicus). Pakistan Journal of Biological Sciences: PJBS 10(19): 3368-3373.
  • Wicińska K, Szreder TS (2004). A novel RFLP/AluI polymorphism of the bovine calpastatin (CAST) gene and its association with selected traits of beef. Animal Science Papers and Reports 22(2): 195-204.
  • Yousefi S Mojtaba AA (2012). Study of Calpastatin gene polymorphism in Holstein cattle and buffalo. Scientific Papers Animal Science and Biotechnologies 45(1): 285-285.
Year 2024, Volume: 38 Issue: 2, 231 - 236, 22.08.2024

Abstract

References

  • Ardicli S, Dincel D, Samli H, Balci F (2017). Effects of polymorphisms at LEP, CAST, CAPN1, GHR, FABP4 and DGAT1 genes on fattening performance and carcass traits in Simmental bulls. Archives Animal Breeding 60(2): 61-70.
  • Ardıçlı S, Şamlı H, Dinçel T, Soyudal B, Balcı F (2017). Individual and combined effects of CAPN1, CAST, LEP and GHR gene polymorphisms on carcass characteristics and meat quality in Holstein bulls.
  • Asadi N, Nanekarani S, Khederzadeh S (2014). Genotypic frequency of calpastatin gene in lori sheep by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. African Journal of Biotechnology 13(19): 1952-1954.
  • Avanus K (2015). Genetic variability of CAST gene in native sheep breeds of Turkey. Kafkas Üniversitesi Veteriner Fakültesi Dergisi 21(6).
  • Bai Y, Hou C, Huang C, Fang F, Dong Y, Li X & Zhang D (2023). Phosphorylation of Calpastatin Negatively Regulates the Activity of Calpain. Life, 13(3), 854.
  • Balcıoğlu M, Karslı T, Şahin E, Ulutaş Z, Aksoy Y (2014). Türkiye’de Yetiştirilen Bazı Yerli Koyun Irklarında Kalpastatin (CAST) Geni Polimorfizminin PCR-RFLP Yöntemiyle Belirlenmesi. Journal of Agricultural Sciences 20(4): 427-433.
  • Bayraktar M, Shoshin O (2022). Association between CAST and MSTN gene polymorphisms with growth traits in Awassi sheep. Kuwait Journal of Science 49(2).
  • Bozhilova-Sakova M, Dimitrova I (2021). Genetic diversity of calpastatin gene and its association with some biochemical parameters in sheep. Journal of BioScience and Biotechnology 10(2): 99-102.
  • Casas E, Kehrli JME (2016). A review of selected genes with known effects on performance and health of cattle. Frontiers in Veterinary Science 3: 113.
  • Chung H, Davis M (2012). Effects of genetic variants for the calpastatin gene on calpastatin activity and meat tenderness in Hanwoo (Korean cattle). Meat Science 90(3): 711-714.
  • Curi RA, Chardulo LAL, Giusti J, Silveira AC, Martins CL, de Oliveira HN (2010). Assessment of GH1, CAPN1 and CAST polymorphisms as markers of carcass and meat traits in Bos indicus and Bos taurus–Bos indicus cross beef cattle. Meat Science 86(4): 915-920.
  • Curi RA, Chardulo LAL, Mason M, Arrigoni M, Silveira AC, De Oliveira H (2009). Effect of single nucleotide polymorphisms of CAPN1 and CAST genes on meat traits in Nellore beef cattle (Bos indicus) and in their crosses with Bos taurus. Animal Genetics 40(4): 456-462.
  • Curi RA, Chardulo LAL, Silveira AC, Oliveira HNd (2008). Alternative genotyping method for the single nucleotide polymorphism A2959G (AF159246) of the bovine CAST gene. Pesquisa Agropecuária Brasileira 43: 657-659.
  • Esteves C, do Livramento K, Paiva L, Peconick A, Garcia I, Garbossa CAP, Cardoso T, Faria P (2020). Polymorphism of CAST and GDF-8 genes and association with physical-chemical parameters of sheep meat. Genetics and Molecular Research 19(3): 1-12.
  • Gorlov IF, Shirokova NV, Randelin AV, Voronkova VN, Mosolova NI, Zlobina EY, Kolosov YA, Bakoev NF, Leonova MA, Bakoev SY (2016). CAST/MspI gene polymorphism and its impact on growth traits of Soviet Merinoand Salsk sheep breeds in the South European part of Russia. Turkish Journal of Veterinary & Animal Sciences 40(4): 399-405.
  • Guroff G (1964). A neutral, calcium-activated proteinase from the soluble fraction of rat brain. Journal of Biological Chemistry 239(1): 149-155.
  • Huff-Lonergan E, Mitsuhashi T, Beekman DD, Parrish Jr FC, Olson DG & Robson RM (1996). Proteolysis of specific muscle structural proteins by µ-calpain at low pH and temperature is similar to degradation in postmortem bovine muscle. Journal of Animal Science, 74(5): 993-1008.
  • Ibrahim WI, Kali A (2017). Effect of Polymorphism of Calpastatin gene, Age on meat Tenderness for Carcasses in Local Awassi sheep. Egyptian Journal of Sheep and Goats Sciences 12(2): 1-10.
  • Juszczuk-Kubiak E, Wyszyńska-Koko J, Wicińska K, Rosochacki S (2008). A novel polymorphisms in intron 12 of the bovine calpastatin gene. Molecular Biology Reports 35: 29-35.
  • Kolosov Y, Kolosov A, Shirokova N, Kobyakova M, Osepchuk D, Kulikova A, Aboneev V (2021). Effect of the Cast Gene on Sheep Meat Qualities. International Scientific Conference Fundamental and Applied Scientific Research in the Development of Agriculture in the Far East,
  • Kotova IM, Pestereva NS, Traktirov DS, Absalyamova MT, Karpenko MN (2023). Functions and distribution of calpain-calpastatin system components in brain during mammal ontogeny. Biochimica et Biophysica Acta (BBA)-General Subjects 130345.
  • Machado AL, Meira AN, Muniz EN, Azevedo HC, Coutinho LL, Mourão GB, Pedrosa VB, Pinto LFB (2020). Single Loci and Haplotypes in and Genes are Associated with Growth, Biometrics, and Carcass Traits in Santa Inês Sheep. Annals of Animal Science 20(2): 465-483.
  • Miller SA, Dykes DD, Polesky H (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16(3): 1215.
  • Muhana KH, Jaffar AA, Al Qasimi RHH (2021). Relationship between calpastatin gene polymorphism and production traits in Awassi sheep in Iraq. Indian Journal of Ecology 48: 251-255.
  • Munekata PE, Pateiro M, López-Pedrouso M, Gagaoua M Lorenzo JM (2021). Foodomics in meat quality. Current Opinion in Food Science 38: 79-85.
  • Muroya S, Neath KE, Nakajima I, Oe M, Shibata M, Ojima K, Chikuni K (2012). Differences in mRNA expression of calpains, calpastatin isoforms and calpain/calpastatin ratios among bovine skeletal muscles. Animal Science Journal 83(3): 252-259.
  • Nattrass G, Cafe L, McIntyre B, Gardner G, McGilchrist P, Robinson D, Wang Y, Pethick D, Greenwood P (2014). A post-transcriptional mechanism regulates calpastatin expression in bovine skeletal muscle. Journal of Animal Science, 92(2): 443-455.
  • Ramadevi B, Kumari BP, Sudhakar K, Gangaraju G, Vinod U (2020). Polymorphism of the Ovine Calpastatin (CAST) gene and its association with productive traits in Nellore sheep. Journal of Animal Research,, 10(6): 881-887.
  • Saeed-ul-Hassan K, Riaz MN, Ghaffar A, Khan MFU (2012). Calpastatin (CAST) gene polymorphism and its association with average daily weight gain in Balkhi and Kajli sheep and Beetal goat breeds. Pakistan Journal of Zoology 44(2).
  • Schenkel F, Miller S, Jiang Z, Mandell I, Ye X, Li H, Wilton J (2006). Association of a single nucleotide polymorphism in the calpastatin gene with carcass and meat quality traits of beef cattle. Journal of Animal Science 84(2): 291-299.
  • Suleman M, Khan SU, Riaz MN, Yousaf M, Shah A, Ishaq R (2012). Calpastatin (CAST) gene polymorphism in Kajli, Lohi and Thalli sheep breeds. African Journal of Biotechnology 11(47): 10655-10660.
  • Tahmoorespur M, Nassiry MR, Najafi MF, Ghovvati S (2007). Genetic polymorphism at the candidate gene in Iranian Sistani cattle (Bos indicus). Pakistan Journal of Biological Sciences: PJBS 10(19): 3368-3373.
  • Wicińska K, Szreder TS (2004). A novel RFLP/AluI polymorphism of the bovine calpastatin (CAST) gene and its association with selected traits of beef. Animal Science Papers and Reports 22(2): 195-204.
  • Yousefi S Mojtaba AA (2012). Study of Calpastatin gene polymorphism in Holstein cattle and buffalo. Scientific Papers Animal Science and Biotechnologies 45(1): 285-285.
There are 34 citations in total.

Details

Primary Language English
Subjects Stock Farming and Treatment
Journal Section Research Article
Authors

Fatma İlhan 0000-0002-9248-2056

Early Pub Date August 18, 2024
Publication Date August 22, 2024
Submission Date March 26, 2024
Acceptance Date June 24, 2024
Published in Issue Year 2024 Volume: 38 Issue: 2

Cite

EndNote İlhan F (August 1, 2024) Determination of CAST/MspI Polymorphism in Cattle by PCR-RFLP Method. Selcuk Journal of Agriculture and Food Sciences 38 2 231–236.

Selcuk Agricultural and Food Sciences is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (CC BY NC).