Year 2018, Volume 29, Issue 2, Pages 104 - 110 2018-12-30

The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey

Turhan Turan [1] , Hakan Işıdan [2]

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A total of 127 stool samples (rectal swab) from diarrheic calves, up to one mouth of age, were collected
during one year period (2014-16) from three cities (Sivas, Malatya and Elazığ) located central Turkey. 432 bp partial
sequence of Nsp1ab gene were amplified. The PCR amplicons were purified and sequenced and deposited to GenBank.
Sequence alignment and phylogenetic analysis being based on partial nucleotide sequences of Nsp1ab gene was constructed.
As a result of RT-PCR study, we found that the 3.15% of fecal samples (4/127) were positive for diarrhea calves
from Turkey. The neighbor-joinning tree of partial sequence of Nsp1ab gene (ORF1a) indicated that strains were substituted
under three distinct lineage. None of our strains belonged to the Neuro1 lineage (lineage 3) of Bovine astrovirus
which was isolated from bovine with neurological symptoms. On the other hand, while BAstVHT1-TUR strain was
substituted under lineage 1a, the other novel starts were lineage 2. While the identity of analyzed sequences varies from
51.1 to 100%, novel strains were calculated between 75.8 to 100 % each other. As a result, we report the first detection
and phylogenetic analysis of Bovine astrovirus from Turkey.
Bovine astrovirus, calf, phylogenetic analysis, Turkey
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Primary Language en
Journal Section Issue
Authors

Author: Turhan Turan
Institution: SİVAS CUMHURİYET ÜNİVERSİTESİ

Author: Hakan Işıdan (Primary Author)
Institution: SİVAS CUMHURİYET ÜNİVERSİTESİ

Bibtex @research article { evmd513442, journal = {Etlik Veteriner Mikrobiyoloji Dergisi}, issn = {1016-3573}, address = {Veteriner Kontrol Merkez Araştırma Enstitüsü}, year = {2018}, volume = {29}, pages = {104 - 110}, doi = {}, title = {The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey}, key = {cite}, author = {Turan, Turhan and Işıdan, Hakan} }
APA Turan, T , Işıdan, H . (2018). The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey. Etlik Veteriner Mikrobiyoloji Dergisi, 29 (2), 104-110. Retrieved from http://dergipark.org.tr/evmd/issue/42562/513442
MLA Turan, T , Işıdan, H . "The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey". Etlik Veteriner Mikrobiyoloji Dergisi 29 (2018): 104-110 <http://dergipark.org.tr/evmd/issue/42562/513442>
Chicago Turan, T , Işıdan, H . "The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey". Etlik Veteriner Mikrobiyoloji Dergisi 29 (2018): 104-110
RIS TY - JOUR T1 - The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey AU - Turhan Turan , Hakan Işıdan Y1 - 2018 PY - 2018 N1 - DO - T2 - Etlik Veteriner Mikrobiyoloji Dergisi JF - Journal JO - JOR SP - 104 EP - 110 VL - 29 IS - 2 SN - 1016-3573- M3 - UR - Y2 - 2018 ER -
EndNote %0 Journal of Etlik Veterinary Microbiology The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey %A Turhan Turan , Hakan Işıdan %T The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey %D 2018 %J Etlik Veteriner Mikrobiyoloji Dergisi %P 1016-3573- %V 29 %N 2 %R %U
ISNAD Turan, Turhan , Işıdan, Hakan . "The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey". Etlik Veteriner Mikrobiyoloji Dergisi 29 / 2 (December 2019): 104-110.