TY - JOUR T1 - Adsorption of DNA on Coated Magnetic Beads: Comparison of Physical and Chemical Adsorption TT - Kaplanmış Manyetik Kürelere DNA Adsorpsiyonu: Fiziksel ve Kimyasal Adsorpsiyonun Karşılaştırılması AU - Bayraç, Ceren AU - Bayraç, Abdullah Tahir AU - Sarıkaya, Ecem AU - Varçin, Merve PY - 2019 DA - March DO - 10.18185/erzifbed.442557 JF - Erzincan University Journal of Science and Technology PB - Erzincan Binali Yıldırım Üniversitesi WT - DergiPark SN - 2149-4584 SP - 215 EP - 224 VL - 12 IS - 1 LA - en AB - Based on their unique propertiesvarious iron magnetic nanoparticles have proved to be excellent nanomaterialsfor applications in separation and concentration process. Immobilization ofdeoxyribonucleic acid (DNA) molecules on the magnetic beads are acutelyimportant and have potential uses in many techniques such as DNA extraction,concentration, biosensors, microarrays and next generation sequencing. In thisstudy the adsorption of single stranded DNA (ssDNA) via poly-l-lysine coatediron oxide magnetic beads was performed under varying conditions ofpoly-l-lysine amount, initial DNA concentration, ionic strength, bonding typeand length of DNA. The adsorption process was examined via Langmuir andFreundlich isotherm models. The ionic interaction between negatively chargedDNA and positively charged surface of magnetic beads showed multilayeradsorption with Freundlich adsorption isotherm, covalent bonding betweenmodified DNA and surface by crosslinking provided higher adsorption efficiencywith Langmuir adsorption isotherm. Both adsorption methods provided magneticbeads with favorable adsorption of ssDNA. KW - ssDNA KW - magnetic beads KW - adsorption KW - Langmuir KW - Freundlich N2 - Kendilerine hasözellikleri nedeniyle çeşitli demir manyetik nanopartiküllerin ayırma ve yoğunlaştırmauygulamalarında mükemmel nanomateryal oldukları kanıtlanmıştır.Deoksiribonükleik asit (DNA) moleküllerinin manyetik kürelere immobilizasyonuson derece önemli olmakla birlikte DNA ekstraksiyonu, yoğunlaştırılması,biyosensörler, mikrodiziler ve yeni nesil dizileme gibi birçok tekniktepotansiyel kullanım alanına sahiptir. Bu çalışmada, poli-l-lizin miktarı,başlangıç ​​DNA konsantrasyonu, iyonik kuvveti, bağlanma tipi ve DNAuzunluğunun değişen koşulları altında poli-l-lizin kaplı demir oksit manyetikküreler aracılığıyla tek iplik DNA'nın (ssDNA) adsorpsiyonu,gerçekleştirilmiştir. Adsorpsiyon işlemi Langmuir ve Freundlich izotermmodelleri ile incelenmiştir. Negatif yüklü DNA ile pozitif yüklü manyetikküreler arasındaki iyonik etkileşimi Freundlich adsorpsiyon izotermiyle çokkatmanlı adsorpsiyon, modeli gösterirken, DNA ve yüzey arasındaki kovalentbağlanma Langmuir adsorpsiyon izoterminde daha yüksek adsorpsiyon verimigöstermiştir. Her iki adsorpsiyon yöntemi, manyetik kürelere uygun ssDNAadsorpsiyonu sağlamıştır. CR - Alexiou, C., Arnold, W., Klein, R.J., Parak,. F.G., Hullin, P., Bergemann, C., Erhardt, W., Wagenpfeil, S., Lübbe, AS. 2000. Locoregional cancer treatment with magnetic drug targeting, Cancer Research, 60 (23), 6641-8. CR - Almand, E.A., Goulter, R.M., Jaykus, L.A. 2016. Capture and concentration of viral and bacterial foodborne pathogens using apolipoprotein H, Journal of Microbiological Methods, 128, 88-95. CR - Bayrac, C., Eyidoğan, F., Öktem, H.A. 2017. DNA aptamer-based colorimetric detection platform for Salmonella Enteritidis, Biosensors and Bioelectronics, 98, 22-28. CR - Berensmeier, S. 2006. Magnetic particles for the separation and purification of nucleic acids, Applied Microbiology and Biotechnology, 73 (3), 495–504. CR - Bordelon, H., Russ, P.K., Wright, D.W., Haselton, F.R. 2013. A Magnetic Bead-Based Method for Concentrating DNA from Human Urine for Downstream Detection, Plos ONE, 8(7), e68369. CR - Fuks, L., Herdzik-Koniecko, I., Polkowska-Motrenko, H., Oszczak, A. 2018. Novel procedure for removal of the radioactive metals from aqueous wastes by the magnetic calcium alginate, International Journal of Environmental Science and Technology, 1-12. CR - Funada, M., Nakano, T., Moriwaki, H. 2018. Removal of polycyclic aromatic hydrocarbons from soil using a composite material containing iron and activated carbon in the freeze-dried calcium alginate matrix: Novel soil cleanup technique, Journal of Hazardous Materials, 351, 232-239. CR - Gallo, J.M., Varkonyi, P., Hassan, E.E., Groothius, D.R. 1993. Targeting anticancer drugs to the brain: II. Physiological pharmacokinetic model of oxantrazole following intraarterial administration to rat glioma-2 (RG-2) bearing rats, Journal of pharmacokinetics and biopharmaceutics, 21(5), 575-92. CR - Lee, K.H., Baek, M.K., Cho, E.S., Park, I.H. 2015. Magnetic Separation and Transfer of Wastewater Contaminants Using Magnetic Traveling Wave and Micro Magnetic Bead, IEEE Transactions on Magnetics, 11-15 May 2015, Beijing, China. CR - Lei, Z.M., An, Q.D., Fan, Y., Lv, J.L., Gao, C., Zhai, S.R., Xiao, Z.Y. 2016. Monolithic magnetic carbonaceous beads for efficient Cr(vi) removal from water, New Journal of Chemistry, 40(2), 1195-1204. CR - Lim, M.C., Lee, G.H., Huynh, D.T.N., Hong, C.E., Park, S.Y., Jung, J.Y., Park, C.S., Ko, S., Kim, Y.R. 2016. Biological preparation of highly effective immunomagnetic beads for the separation, concentration, and detection of pathogenic bacteria in milk, Colloids and Surfaces B: Biointerfaces, 145, 854-861. CR - Pal, P., Edathil, A.A., Chaurasia, L., Rambabu, K., Banat, F. 2018. Removal of sulfide from aqueous solutions using novel alginate–iron oxide magnetic hydrogel composites, Polymer Bulletin, 1-21. CR - Sakudo, A., Baba, K., Ikuta, K. 2016. Capturing and concentrating adenovirus using magnetic anionic nanobeads, International Journal of Nanomedicine, 11 (9), 1847-1857. CR - Satoh, K., Iwata, A., Murata, M., Hikata, M., Hayakawa, T., Yamaguchi, T. 2003. Virus concentration using polyethyleneimine-conjugated magnetic beads for improving the sensitivity of nucleic acid amplification tests, Journal of Virological Methods, 114(1), 11-19. CR - Satoh, K., Iwata-Takakura, A., Yoshikawa, A., Gotanda, Y., Tanaka, T., Yamaguchi, T., Mizoguchi, H. 2008. A new method of concentrating hepatitis B virus (HBV) DNA and HBV surface antigen: An application of the method to the detection of occult HBV infection, Vox Sanguinis, 95(3), 174-180. UR - https://doi.org/10.18185/erzifbed.442557 L1 - http://dergipark.org.tr/tr/download/article-file/677623 ER -