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Yıl 2021, Cilt 30, Sayı 1, 58 - 84, 30.06.2021

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Kaynakça

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  • Mueller, N. D., West, P. C., Gerber, J. S., MacDonald, G. K., Polasky, S. and Foley, J. A. A tradeoff frontier for global nitrogen use and cereal production. Environmental Research Letters, 9(5) (2014), 054002.
  • Wan, T., Xue, H. and TONG, Y.-p. Transgenic approaches for improving use efficiency of nitrogen, phosphorus and potassium in crops. Journal of integrative agriculture, 16(12) (2017), 2657-2673.
  • Chen, Q., Soulay, F., Saudemont, B., Elmayan, T., Marmagne, A. and Masclaux-Daubresse, C. Overexpression of ATG8 in Arabidopsis stimulates autophagic activity and increases nitrogen remobilization efficiency and grain filling. Plant and Cell Physiology, 60(2) (2019), 343-352.
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  • Wang, Y.-Y., Cheng, Y.-H., Chen, K.-E. and Tsay, Y.-F. Nitrate transport, signaling, and use efficiency. Annual Review of Plant Biology, 69 (2018), 85-122.
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  • Good, A. Toward nitrogen-fixing plants. Science, 359(6378) (2018), 869-870.
  • Naulin, P. A., Armijo, G. I., Vega, A. S., Tamayo, K. P., Gras, D. E., de la Cruz, J. and Gutiérrez, R. A. Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis thaliana. Plant and Cell Physiology, 61, 2 (2020), 342-352.
  • Armijo, G. and Gutiérrez, R. A. Emerging players in the nitrate signaling pathway. Molecular Plant, 10(8) (2017), 1019-1022.
  • Zhao, L., Zhang, W., Yang, Y., Li, Z., Li, N., Qi, S., Crawford, N. M. and Wang, Y. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1. 1–dependent pathway in the presence of ammonium. Scientific reports, 8(1) (2018), 1-13.
  • Camargo, A., Llamas, Á., Schnell, R. A., Higuera, J. J., González-Ballester, D., Lefebvre, P. A., Fernández, E. and Galván, A. Nitrate signaling by the regulatory gene NIT2 in Chlamydomonas. The Plant Cell, 19(11) (2007), 3491-3503.
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THE NIN-LIKE PROTEIN (NLP) FAMILY IN COMMON BEAN: GENOME-WIDE IDENTIFICATION, EVOLUTION AND EXPRESSION ANALYSIS

Yıl 2021, Cilt 30, Sayı 1, 58 - 84, 30.06.2021

Öz

One of the plant-specific transcription factor families that play an important role in responses to nitrogen deficiency is NODULE INCEPTION-like (NIN-like) proteins (NLPs). However, the properties and evolutionary relationships of NIN genes in P. vulgaris, which enable nodule formation naturally, have not been studied yet. 12 Pvul-NIN genes have been identified in this study and the approximate positions of these genes have been determined. At the same time, several biochemical and physicochemical properties of NIN-like proteins have been elucidated. Comparisons between both monocot and dicot, but also nodule binding and non-nodule binding species were considered when investigating the evolutionary relationships of NIN genes. 16 duplication events (14 segmental and 2 tandem) have been shown to play a role in the expansion of the NIN gene family in P. vulgaris. In addition, comparative expression analysis of NIN genes was performed by processing publicly available RNAseq data and different levels of Pvul-NIN gene expression under both salt and drought stress were detected, suggesting the roles of Pvul-NIN gene for abiotic stress response. Expression levels of NIN genes have also been investigated in different plant tissues and have been shown to be intensely expressed in nodules and root tissues. This is the first study on the in-silico detection and characterization of Pvul-NIN genes to examine gene expression levels in common bean. The results could therefore provide the basis for future studies of functional characterization of Pvul-NIN genes.

Kaynakça

  • Mu, X., Chen, Q., Chen, F., Yuan, L. and Mi, G. Within-leaf nitrogen allocation in adaptation to low nitrogen supply in maize during grain-filling stage. Frontiers in plant science, 7 (2016), 699.
  • Mu, X., Chen, Q., Chen, F., Yuan, L. and Mi, G. A RNA-seq analysis of the response of photosynthetic system to low nitrogen supply in maize leaf. International journal of molecular sciences, 18(12) (2017), 2624.
  • Masclaux-Daubresse, C., Daniel-Vedele, F., Dechorgnat, J., Chardon, F., Gaufichon, L. and Suzuki, A. Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture. Annals of botany, 105(7) (2010), 1141-1157.
  • Tegeder, M. and Masclaux‐Daubresse, C. Source and sink mechanisms of nitrogen transport and use. New Phytologist, 217(1) (2018), 35-53.
  • Schroeder, J. I., Delhaize, E., Frommer, W. B., Guerinot, M. L., Harrison, M. J., Herrera-Estrella, L., Horie, T., Kochian, L. V., Munns, R. and Nishizawa, N. K. Using membrane transporters to improve crops for sustainable food production. Nature, 497(7447) (2013), 60-66.
  • Mu, X. and Luo, J. Evolutionary analyses of NIN-like proteins in plants and their roles in nitrate signaling. Cellular and Molecular Life Sciences (2019), 1-12.
  • Undurraga, S. F., Ibarra-Henríquez, C., Fredes, I., Álvarez, J. M. and Gutiérrez, R. A. Nitrate signaling and early responses in Arabidopsis roots. Journal of Experimental Botany, 68(10) (2017), 2541-2551.
  • Luo, J., Zhou, J.-J., Masclaux-Daubresse, C., Wang, N., Wang, H. and Zheng, B. Morphological and physiological responses to contrasting nitrogen regimes in Populus cathayana is linked to resources allocation and carbon/nitrogen partition. Environmental and Experimental Botany, 162 (2019), 247-255.
  • Mueller, N. D., West, P. C., Gerber, J. S., MacDonald, G. K., Polasky, S. and Foley, J. A. A tradeoff frontier for global nitrogen use and cereal production. Environmental Research Letters, 9(5) (2014), 054002.
  • Wan, T., Xue, H. and TONG, Y.-p. Transgenic approaches for improving use efficiency of nitrogen, phosphorus and potassium in crops. Journal of integrative agriculture, 16(12) (2017), 2657-2673.
  • Chen, Q., Soulay, F., Saudemont, B., Elmayan, T., Marmagne, A. and Masclaux-Daubresse, C. Overexpression of ATG8 in Arabidopsis stimulates autophagic activity and increases nitrogen remobilization efficiency and grain filling. Plant and Cell Physiology, 60(2) (2019), 343-352.
  • Mandal, V. K., Sharma, N. and Raghuram, N. Molecular targets for improvement of crop nitrogen use efficiency: current and emerging options. Springer, City, 2018.
  • Mu, X., Chen, F., Wu, Q., Chen, Q., Wang, J., Yuan, L. and Mi, G. Genetic improvement of root growth increases maize yield via enhanced post-silking nitrogen uptake. European Journal of Agronomy, 63 (2015), 55-61.
  • Luo, J. and Zhou, J.-J. Growth performance, photosynthesis, and root characteristics are associated with nitrogen use efficiency in six poplar species. Environmental and Experimental Botany, 164 (2019), 40-51.
  • Wang, Y.-Y., Cheng, Y.-H., Chen, K.-E. and Tsay, Y.-F. Nitrate transport, signaling, and use efficiency. Annual Review of Plant Biology, 69 (2018), 85-122.
  • Oldroyd, G. E. Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants. Nature Reviews Microbiology, 11(4) (2013), 252-263.
  • Good, A. Toward nitrogen-fixing plants. Science, 359(6378) (2018), 869-870.
  • Naulin, P. A., Armijo, G. I., Vega, A. S., Tamayo, K. P., Gras, D. E., de la Cruz, J. and Gutiérrez, R. A. Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis thaliana. Plant and Cell Physiology, 61, 2 (2020), 342-352.
  • Armijo, G. and Gutiérrez, R. A. Emerging players in the nitrate signaling pathway. Molecular Plant, 10(8) (2017), 1019-1022.
  • Zhao, L., Zhang, W., Yang, Y., Li, Z., Li, N., Qi, S., Crawford, N. M. and Wang, Y. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1. 1–dependent pathway in the presence of ammonium. Scientific reports, 8(1) (2018), 1-13.
  • Camargo, A., Llamas, Á., Schnell, R. A., Higuera, J. J., González-Ballester, D., Lefebvre, P. A., Fernández, E. and Galván, A. Nitrate signaling by the regulatory gene NIT2 in Chlamydomonas. The Plant Cell, 19(11) (2007), 3491-3503.
  • Chardin, C., Girin, T., Roudier, F., Meyer, C. and Krapp, A. The plant RWP-RK transcription factors: key regulators of nitrogen responses and of gametophyte development. Journal of experimental botany, 65(19) (2014), 5577-5587.
  • Sharrocks, A. D. The ETS-domain transcription factor family. Nature reviews Molecular cell biology, 2(11) (2001), 827-837.
  • Schwechheimer, C., Zourelidou, M. and Bevan, M. Plant transcription factor studies. Annual review of plant biology, 49(1) (1998), 127-150.
  • Schauser, L., Wieloch, W. and Stougaard, J. Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. Journal of molecular evolution, 60(2) (2005), 229-237.
  • Tedeschi, F., Rizzo, P., Rutten, T., Altschmied, L. and Bäumlein, H. RWP‐RK domain‐containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytologist, 213(4) (2017), 1909-1924.
  • Konishi, M. and Yanagisawa, S. Arabidopsis NIN-like transcription factors have a central role in nitrate signalling. Nature communications, 4(1) (2013), 1-9.
  • Schauser, L., Roussis, A., Stiller, J. and Stougaard, J. A plant regulator controlling development of symbiotic root nodules. Nature, 402(6758) (1999), 191-195.
  • Streeter, J. G. Effect of nitrate in the rooting medium on carbohydrate composition of soybean nodules. Plant physiology, 68(4) (1981), 840-844.
  • Carroll, B. J., McNeil, D. L. and Gresshoff, P. M. Isolation and properties of soybean [Glycine max (L.) Merr.] mutants that nodulate in the presence of high nitrate concentrations. Proceedings of the National Academy of Sciences, 82(12) (1985), 4162-4166.
  • Laeremans, T. and Vanderleyden, J. Infection and nodulation signalling in Rhizobium-Phaseolus vulgaris symbiosis. World Journal of Microbiology and Biotechnology, 14(6) (1998), 787-808.
  • Ruschel, A., Salati, E. and Vose, P. Nitrogen enrichment of soil and plant byRhizobium phaseoli-Phaseolus vulgaris symbiosis. Plant and Soil, 51(3) (1979), 425-429.
  • Hungria, M., Campo, R. J. and Mendes, I. C. Benefits of inoculation of the common bean (Phaseolus vulgaris) crop with efficient and competitive Rhizobium tropici strains. Biology and Fertility of Soils, 39(2) (2003), 88-93.
  • Albareda, M., Rodríguez-Navarro, D. N. and Temprano, F. J. Soybean inoculation: Dose, N fertilizer supplementation and rhizobia persistence in soil. Field crops research, 113(3) (2009), 352-356.
  • O'hara, G. and Daniel, R. M. Rhizobial denitrification: a review. Soil Biology and Biochemistry, 17(1) (1985), 1-9.
  • Zhang, N. N., Sun, Y. M., Wang, E. T., Yang, J. S., Yuan, H. L. and Scow, K. M. Effects of intercropping and Rhizobial inoculation on the ammonia-oxidizing microorganisms in rhizospheres of maize and faba bean plants. Applied Soil Ecology, 85 (2015), 76-85.
  • Horiuchi, J.-i., Prithiviraj, B., Bais, H. P., Kimball, B. A. and Vivanco, J. M. Soil nematodes mediate positive interactions between legume plants and rhizobium bacteria. Planta, 222(5) (2005), 848-857.
  • Anjum, M. S., Ahmed, Z. I. and Rauf, C. A. Effect of Rhizobium inoculation and nitrogen fertilizer on yield and yield components of mungbean. International Journal of Agriculture and Biology (Pakistan) (2006).
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Ayrıntılar

Birincil Dil İngilizce
Konular Biyoloji
Bölüm Research Article
Yazarlar

İlker BÜYÜK> (Sorumlu Yazar)
ANKARA UNIVERSITY
0000-0002-0843-8299
Türkiye


Aybüke OKAY>
ANKARA UNIVERSITY
0000-0002-6772-4316
Türkiye


Taner AKSOY Bu kişi benim
Ministry of Agriculture and Forestry, General Directorate of Plant Production
0000-0002-6982-7263
Türkiye


Sumer ARAS>
ANKARA UNIVERSITY
0000-0003-3474-9493
Türkiye

Yayımlanma Tarihi 30 Haziran 2021
Yayınlandığı Sayı Yıl 2021, Cilt 30, Sayı 1

Kaynak Göster

Bibtex @araştırma makalesi { communc869501, journal = {Communications Faculty of Sciences University of Ankara Series C Biology}, issn = {1303-6025}, eissn = {2651-3749}, address = {Ankara Üniversitesi Fen Fakültesi Matematik Bölümü}, publisher = {Ankara Üniversitesi}, year = {2021}, volume = {30}, number = {1}, pages = {58 - 84}, title = {THE NIN-LIKE PROTEIN (NLP) FAMILY IN COMMON BEAN: GENOME-WIDE IDENTIFICATION, EVOLUTION AND EXPRESSION ANALYSIS}, key = {cite}, author = {Büyük, İlker and Okay, Aybüke and Aksoy, Taner and Aras, Sumer} }

Communications Faculty of Sciences University of Ankara Series C-Biology.

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