Araştırma Makalesi
BibTex RIS Kaynak Göster
Yıl 2020, Cilt: 21 , 55 - 62, 27.11.2020
https://doi.org/10.18038/estubtda.820129

Öz

Kaynakça

  • [1] Tsukada K, Takahashi K and Nabeta K. Biosynthesis of jasmonic acid in a plant pathogenic fungus, Lasiodiplodia theobromae. Phytochemistry 2010; 71, 2019–2023.
  • [2] Kupper FC, Gaquerel E, Cosse A, Adas F, Peters AF, Muller DG et al. Free fatty acids and methyl jasmonate trigger defense reactions in Laminaria digitata. Plant Cell Physiol. 2009; 50, 789–800.
  • [3] Gao QM, Venugopal S, Navarre D and Kachroo A. Low oleic acid derived repression of jasmonic acid-inducible defense responses requires the WRKY50 and WRKY51 proteins. Plant Physiol. 2011; 155, 464–476.
  • [4] Jalalpour Z, Shabani L, Afghani L, Sharifi-Tehrani M and Amini S. Stimulatory effect of methyl jasmonate and squalestatin on phenolic metabolism through induction of LOX activity in cell suspension culture of yew. Turk. J. Biol. 2014; 38, 76–82. [5] Browse J. Jasmonate: preventing the maize tassel from getting in touch with his feminine side. Sci. Signal. 2009; 2, 59, pe9.
  • [6] Moreno JE, Tao Y, Chory J and Ballare CL. Ecological modulation of plant defense via phytochrome control of jasmonates sensitivity. Proc. Natl. Acad. Sci. U.S.A. 2009; 106, 4935–4940.
  • [7] Wang J, Song L, Gong X, Xu J and Li M. Functions of Jasmonic Acid in Plant Regulation and Response to Abiotic Stress. Int. J. Mol. Sci. 2020; 21, 1446 (1-17).
  • [8] Cipollini D. Constitutive expression of methyl jasmonates inducible responses delays reproduction and constrains fitness responses to nutrients in Arabidopsis thaliana. Evol. Ecol. 2010; 24, 59–68.
  • [9] Nafie E, Hathout T, Al Shyma Al Mokadem. Jasmonic acid elicits oxidative defense and detoxification systems in Cucumis melo L. cells. Braz. J. Plant Physiol. 2011; 23, 161–174.
  • [10] Vick BA and Zimmerman DC. Biosynthesis of jasmonic acid by several plant species. Plant Physiol. 1984; 75, 458–461.
  • [11] Holbrook L, Tung P, Ward K, Reid DM, Abrams S, Lamb N, Wilson QJ and Moloney MM. Importance of the Chiral Centers of Jasmonic Acid in the Responses of Plants: Activities and Antagonism between Natural and Synthetic Analogs. Plant. Physiol. 1997; 114, 419-428.
  • [12] Kus N, Haman BS, Fausto R. Thermal decomposition of allantoin as probed by matrix isolation FTIR spectroscopy. Tetrahedron 2009; 65, 9719–9727.
  • [13] Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA et al. Gaussian 09, Revision A.0.2; Gaussian, Inc.: Wallingford, CT, 2009.
  • [14] McLean AD, Chandler GS. Contracted Gaussian Basis Sets for Molecular Calculations. I. Second Row Atoms. Z=11−18. J. Chem. Phys. 1980; 72, 5639−5648.
  • [15] Becke AD. Density Functional Exhange-Energy Approximation with Correct Asymptotic Behavior. Phys. Rev. A: At., Mol., Opt. Phys. 1988; 38, 3098−3100.
  • [16] Lee CT, Parr R. G. Development of the Colle Salvetti Correlation-Energy Formula into a Functional of the Electron Density. Phys. Rev. B 1988; 37, 785−789.
  • [17] Weinhold F, Landis CR. Valency and Bonding. A Natural Bond Orbital Donor-Acceptor Perspective. Cambridge University Press: New York, 2005.
  • [18] Bauernschmitt R, Ahlrichs R. Treatment of Electronic Excitations within the Adiabatic Approximation of Time Dependent Density Functional Theory. Chem. Phys. Lett. 1996, 256, 454−464.

THEORETICAL ANALYSIS OF THE STRUCTURE OF CHIRAL JASMONIC ACID

Yıl 2020, Cilt: 21 , 55 - 62, 27.11.2020
https://doi.org/10.18038/estubtda.820129

Öz

Jasmonic acid, also known as jasmonates, (JA), a molecule formed by the oxygenation of fatty acids, is an organic compound and is found in many plants, especially jasmine. The conformation of this compound is found according to the location in the chiral centers. In this study, the molecular structure of JA (labeled C-4 and C-5 in this study) which has two chiral centers was investigated by DFT and TD-DFT methods. These structures have been found to have RR, RS and SS configurations relative to their chiral centers. Each configuration has cis and trans conformations depending on the orientation of the chain groups attached to the five atom ring. The minimum energies of each conformation were calculated with DFT/B3LYP/6-311++G(d,p) method and the structures of their stable form were drawn. JA_RR_trans conformer was found most stable than the other conformers. Excited state energies were calculated using TD-DFT calculations and also HOMO-LUMO energy gaps were found for all chiral conformers.

Kaynakça

  • [1] Tsukada K, Takahashi K and Nabeta K. Biosynthesis of jasmonic acid in a plant pathogenic fungus, Lasiodiplodia theobromae. Phytochemistry 2010; 71, 2019–2023.
  • [2] Kupper FC, Gaquerel E, Cosse A, Adas F, Peters AF, Muller DG et al. Free fatty acids and methyl jasmonate trigger defense reactions in Laminaria digitata. Plant Cell Physiol. 2009; 50, 789–800.
  • [3] Gao QM, Venugopal S, Navarre D and Kachroo A. Low oleic acid derived repression of jasmonic acid-inducible defense responses requires the WRKY50 and WRKY51 proteins. Plant Physiol. 2011; 155, 464–476.
  • [4] Jalalpour Z, Shabani L, Afghani L, Sharifi-Tehrani M and Amini S. Stimulatory effect of methyl jasmonate and squalestatin on phenolic metabolism through induction of LOX activity in cell suspension culture of yew. Turk. J. Biol. 2014; 38, 76–82. [5] Browse J. Jasmonate: preventing the maize tassel from getting in touch with his feminine side. Sci. Signal. 2009; 2, 59, pe9.
  • [6] Moreno JE, Tao Y, Chory J and Ballare CL. Ecological modulation of plant defense via phytochrome control of jasmonates sensitivity. Proc. Natl. Acad. Sci. U.S.A. 2009; 106, 4935–4940.
  • [7] Wang J, Song L, Gong X, Xu J and Li M. Functions of Jasmonic Acid in Plant Regulation and Response to Abiotic Stress. Int. J. Mol. Sci. 2020; 21, 1446 (1-17).
  • [8] Cipollini D. Constitutive expression of methyl jasmonates inducible responses delays reproduction and constrains fitness responses to nutrients in Arabidopsis thaliana. Evol. Ecol. 2010; 24, 59–68.
  • [9] Nafie E, Hathout T, Al Shyma Al Mokadem. Jasmonic acid elicits oxidative defense and detoxification systems in Cucumis melo L. cells. Braz. J. Plant Physiol. 2011; 23, 161–174.
  • [10] Vick BA and Zimmerman DC. Biosynthesis of jasmonic acid by several plant species. Plant Physiol. 1984; 75, 458–461.
  • [11] Holbrook L, Tung P, Ward K, Reid DM, Abrams S, Lamb N, Wilson QJ and Moloney MM. Importance of the Chiral Centers of Jasmonic Acid in the Responses of Plants: Activities and Antagonism between Natural and Synthetic Analogs. Plant. Physiol. 1997; 114, 419-428.
  • [12] Kus N, Haman BS, Fausto R. Thermal decomposition of allantoin as probed by matrix isolation FTIR spectroscopy. Tetrahedron 2009; 65, 9719–9727.
  • [13] Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA et al. Gaussian 09, Revision A.0.2; Gaussian, Inc.: Wallingford, CT, 2009.
  • [14] McLean AD, Chandler GS. Contracted Gaussian Basis Sets for Molecular Calculations. I. Second Row Atoms. Z=11−18. J. Chem. Phys. 1980; 72, 5639−5648.
  • [15] Becke AD. Density Functional Exhange-Energy Approximation with Correct Asymptotic Behavior. Phys. Rev. A: At., Mol., Opt. Phys. 1988; 38, 3098−3100.
  • [16] Lee CT, Parr R. G. Development of the Colle Salvetti Correlation-Energy Formula into a Functional of the Electron Density. Phys. Rev. B 1988; 37, 785−789.
  • [17] Weinhold F, Landis CR. Valency and Bonding. A Natural Bond Orbital Donor-Acceptor Perspective. Cambridge University Press: New York, 2005.
  • [18] Bauernschmitt R, Ahlrichs R. Treatment of Electronic Excitations within the Adiabatic Approximation of Time Dependent Density Functional Theory. Chem. Phys. Lett. 1996, 256, 454−464.
Toplam 17 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Mühendislik
Bölüm Makaleler
Yazarlar

Nihal Kuş 0000-0003-4162-7152

Yayımlanma Tarihi 27 Kasım 2020
Yayımlandığı Sayı Yıl 2020 Cilt: 21

Kaynak Göster

AMA Kuş N. THEORETICAL ANALYSIS OF THE STRUCTURE OF CHIRAL JASMONIC ACID. Eskişehir Technical University Journal of Science and Technology A - Applied Sciences and Engineering. Kasım 2020;21:55-62. doi:10.18038/estubtda.820129