Research Article

UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation

Volume: 11 Number: 4 December 30, 2024
EN

UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation

Abstract

Retinal vessel segmentation plays a critical role in diagnosing and managing ophthalmic and systemic diseases, as abnormalities in retinal vasculature can indicate disease progression. Traditional manual segmentation by expert ophthalmologists is time-consuming, labor-intensive, and prone to variability, underscoring the need for automated methods. While deep learning approaches like U-Net have advanced retinal vessel segmentation, they often struggle to generalize across diverse datasets due to differences in image acquisition techniques, resolutions, and patient demographics. To address these challenges, I propose UKnow-Net, a knowledge-enhanced U-Net architecture designed to improve retinal vessel segmentation across multiple datasets. UKnow-Net employs a multi-step process involving knowledge distillation and enhancement techniques. First, I train four specialized teacher networks separately on four publicly available retinal vessel segmentation datasets—DRIVE, CHASE_DB1, DCA1, and CHUAC—allowing each to specialize in the unique features of its respective dataset. These teacher networks generate pseudo-labels representing their domain-specific knowledge. We then train a student network using the ensemble of pseudo-labels from all teacher networks, effectively distilling the collective expertise into a unified model capable of generalizing across different datasets. Experiments demonstrate that UKnow-Net outperforms traditional handcrafted networks (such as U-Net, UNet++, and Attention U-Net) and several state-of-the-art models in key performance metrics, including sensitivity, specificity, F1 score, and Intersection over Union (IoU). Specifically, our two variants, UKnowNet-A and UKnowNet-B, show well performance; UKnowNet-A, trained solely on pseudo-labels, achieved higher sensitivity across all datasets, indicating a superior ability to detect true positives, while UKnowNet-B, which combines pseudo-labels with ground truth annotations, achieved balanced precision and recall, leading to higher F1 scores and IoU metrics. The integration of pseudo-labels effectively transfers the collective expertise of the teacher networks to the student network, enhancing generalization and robustness. I aim to ensure fair comparison and reproducibility in future research by publicly sharing our source code and model weights.

Keywords

References

  1. Abràmoff, M. D., Garvin, M. K., & Sonka, M. (2010). Retinal imaging and image analysis. IEEE Reviews in Biomedical Engineering, 3, 169-208. https://doi.org/10.1109/rbme.2010.2084567
  2. Amritesh, Owais, M. M., Vemula, V., Amit, A., & Natarajan, S. (2023, May 3-5). Localised Land-Use Classification Using U-Net and Satellite Imaging. In: A. J. Kulkarni, & N. Cheikhrouhou (Eds.), Proceedings of the 2nd International Conference on Information Science and Applications (ICISA 2023), (pp. 235-248), Pune, India. https://doi.org/10.1007/978-981-99-6984-5_15
  3. Anand, V., Gupta, S., Koundal, D., Nayak, S. R., Barsocchi, P., & Bhoi, A. K. (2022). Modified U-net architecture for segmentation of skin lesion. Sensors, 22(3), 867. https://doi.org/10.3390/s22030867
  4. Carballal, A., Novoa, F. J., Fernandez-Lozano, C., García-Guimaraes, M., Aldama-López, G., Calviño-Santos, R., Vazquez-Rodriguez, J. M., & Pazos, A. (2018). Automatic multiscale vascular image segmentation algorithm for coronary angiography. Biomedical Signal Processing and Control, 46, 1-9. https://doi.org/10.1016/j.bspc.2018.06.007
  5. Cervantes-Sanchez, F., Cruz-Aceves, I., Hernandez-Aguirre, A., Hernandez-Gonzalez, M. A., & Solorio-Meza, S. E. (2019). Automatic segmentation of coronary arteries in X-ray angiograms using multiscale analysis and artificial neural networks. Applied Sciences, 9(24), 5507. https://doi.org/10.3390/app9245507
  6. Chaudhuri, S., Chatterjee, S., Katz, N., Nelson, M., & Goldbaum, M. (1989). Detection of blood vessels in retinal images using two-dimensional matched filters. IEEE Transactions on Medical Imaging, 8(3), 263-269. https://doi.org/10.1109/42.34715
  7. Fraz, M. M., Remagnino, P., Hoppe, A., Uyyanonvara, B., Rudnicka, A. R., Owen, C. G., & Barman, S. A. (2012). Blood vessel segmentation methodologies in retinal images–a survey. Computer Methods and Programs in Biomedicine, 108(1), 407-433. https://doi.org/10.1016/j.cmpb.2012.03.009
  8. Fu, H., Xu, Y., Lin, S., Kee Wong, D. W., & Liu, J. (2016, October 17-21). Deepvessel: Retinal vessel segmentation via deep learning and conditional random field. In: S. Ourselin, L. Joskowicz, M. R. Sabuncu, G. Unal, & W. Wells (Eds.), Proceedings of the 19th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2016), (Part II, pp. 132-139). Athens, Greece. https://doi.org/10.1007/978-3-319-46723-8_16

Details

Primary Language

English

Subjects

Deep Learning, Machine Vision , Machine Learning (Other)

Journal Section

Research Article

Publication Date

December 30, 2024

Submission Date

October 30, 2024

Acceptance Date

November 14, 2024

Published in Issue

Year 2024 Volume: 11 Number: 4

APA
Kuş, Z. (2024). UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation. Gazi University Journal of Science Part A: Engineering and Innovation, 11(4), 742-758. https://doi.org/10.54287/gujsa.1575986
AMA
1.Kuş Z. UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation. GU J Sci, Part A. 2024;11(4):742-758. doi:10.54287/gujsa.1575986
Chicago
Kuş, Zeki. 2024. “UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation”. Gazi University Journal of Science Part A: Engineering and Innovation 11 (4): 742-58. https://doi.org/10.54287/gujsa.1575986.
EndNote
Kuş Z (December 1, 2024) UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation. Gazi University Journal of Science Part A: Engineering and Innovation 11 4 742–758.
IEEE
[1]Z. Kuş, “UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation”, GU J Sci, Part A, vol. 11, no. 4, pp. 742–758, Dec. 2024, doi: 10.54287/gujsa.1575986.
ISNAD
Kuş, Zeki. “UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation”. Gazi University Journal of Science Part A: Engineering and Innovation 11/4 (December 1, 2024): 742-758. https://doi.org/10.54287/gujsa.1575986.
JAMA
1.Kuş Z. UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation. GU J Sci, Part A. 2024;11:742–758.
MLA
Kuş, Zeki. “UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation”. Gazi University Journal of Science Part A: Engineering and Innovation, vol. 11, no. 4, Dec. 2024, pp. 742-58, doi:10.54287/gujsa.1575986.
Vancouver
1.Zeki Kuş. UKnow-Net: Knowledge-Enhanced U-Net for Improved Retinal Vessel Segmentation. GU J Sci, Part A. 2024 Dec. 1;11(4):742-58. doi:10.54287/gujsa.1575986

Cited By