Research Article

Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum

Volume: 12 Number: 1 February 20, 2025
EN TR

Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum

Abstract

Essential oils are widely used in pharmacology, cosmetics, and food industries, and they also have biological activities such as antioxidant, anti-inflammatory, anti-rheumatic, and antimicrobial. Ocimum basilicum (basil) plant has a rich content of essential oils. Hence, the stem, leaf, and flower parts of the O. basilicum were analyzed freshly on the RSH/GC-MS device to determine the essential oil content. As a result of the analysis, α-elemene, linalool, and eucalyptol were detected as the main components. It was observed that the highest linalool content was in the flower part at 47.85%, and the eucalyptol content was in the leaf part at 44.00%. Additionally, it was determined that the α-elemene content was highest in the flower part with 12.49%. According to the analysis results, high amounts of linalool, eucalyptol, and α-elemene were detected. The inhibitory properties of these compounds against the DNA gyrase enzyme were investigated by molecular docking. MolDock score (-78.72, -47.50, -88.86) and binding energy (2.9, 4.6, 4.0 kcal/mol) of linalool, eucalyptol, and α-elemene compounds were determined respectively. According to the ADME/T properties of the molecules examined; The α-elemene did not show any toxic effects. As a result, the eucalyptol compound may be used as an inhibitor against the DNA gyrase enzyme. In addition, it can contribute to the economy by obtaining essential oils from the non-consumable flowers and stem parts of the basil plant and increasing its usability in industries such as cleaning, cosmetics, etc.

Keywords

Thanks

We would like to thank Siirt University, Science and Technology Application and Research Center for RSH/GC-MS analysis.

References

  1. Adams, R.P. (2007). Identification of essential oil components by gas chromatography/mass spectrometry: Allured publishing corporation Carol Stream, IL.
  2. Ahmed, A.F., Attia, F.A., Liu, Z., Li, C., Wei, J., & Kang, W. (2019). Antioxidant activity and total phenolic content of essential oils and extracts of Sweet basil (Ocimum basilicum L.) plants. Food Science and Human Wellness, 8(3), 299 305. https://doi.org/10.1016/j.fshw.2019.07.004
  3. Al Abbasy, D.W., Pathare, N., Al-Sabahi, J.N., & Khan, S.A. (2015). Chemical composition and antibacterial activity of essential oil isolated from Omani basil (Ocimum basilicum Linn.). Asian Pacific Journal of Tropical Disease, 5(8), 645 649. https://doi.org/10.1016/S2222-1808(15)60905-7
  4. Barua, S., Dewan, K., Islam, S., Mojumder, S., et al. (2023). Chemical composition, antioxidant, and antimicrobial activities of Bangladesh-origin Jhum-cultivar basil (Ocimum basilicum L.) essential oil. International Journal of Secondary Metabolite, 10(4), 511-524. https://doi.org/10.21448/ijsm.1230316
  5. Başar, Y., Yenigün, S., İpek, Y., Behçet, L., Gül, F., Özen, T., & Demirtaş, İ. (2023). DNA protection, molecular docking, enzyme inhibition and enzyme kinetic studies of 1,5,9-epideoxyloganic acid isolated from Nepeta aristata with bio-guided fractionation. Journal of Biomolecular Structure and Dynamics, 42(17), 9235 9248. https://doi.org/10.1080/07391102.2023.2250461
  6. Başar, Y., Demirtaş, İ., Yenigün, S., İpek, Y., Özen, T., & Behçet, L. (2024a). Molecular docking, molecular dynamics, MM/PBSA approaches and bioactivity studies of nepetanudoside B isolated from endemic Nepeta aristata. Journal of Biomolecular Structure and Dynamics, 1-14. https://doi.org/10.1080/07391102.2024.2309641
  7. Başar, Y., Yenigün, S., Gül, F., Ozen, T., Demirtas, İ., Alma, Mh, Temel, S. (2024b) Phytochemical profiling, molecular docking and ADMET prediction of crude extract of Atriplex nitens Schkuhr for the screening of antioxidant and urease inhibitory. International Journal of Chemistry and Technology, 8(1), 60-68. https://doi.org/10.32571/ijct.1389719
  8. Bayir, B., Gündüz, H., Usta, T., Şahin, E., Özdemir, Z., Kayır, Ö., ... Erenler, R. (2014). Chemical Composition of Essential Oil from Marrubium Vulgare L. Leaves. Journal of New Results in Science, 6(6), 44-50.

Details

Primary Language

English

Subjects

Plant Biochemistry, Pharmaceutical Chemistry, Natural Products and Bioactive Compounds

Journal Section

Research Article

Early Pub Date

January 19, 2025

Publication Date

February 20, 2025

Submission Date

February 23, 2024

Acceptance Date

November 6, 2024

Published in Issue

Year 2025 Volume: 12 Number: 1

APA
Başar, Y., Gök, M., Erenler, R., & Demirtas, İ. (2025). Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum. International Journal of Secondary Metabolite, 12(1), 146-157. https://doi.org/10.21448/ijsm.1441857
AMA
1.Başar Y, Gök M, Erenler R, Demirtas İ. Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum. Int. J. Sec. Metabolite. 2025;12(1):146-157. doi:10.21448/ijsm.1441857
Chicago
Başar, Yunus, Mesut Gök, Ramazan Erenler, and İbrahim Demirtas. 2025. “Phytochemical Profiling, Molecular Docking and ADMET Prediction of Essential Oil of Ocimum Basilicum”. International Journal of Secondary Metabolite 12 (1): 146-57. https://doi.org/10.21448/ijsm.1441857.
EndNote
Başar Y, Gök M, Erenler R, Demirtas İ (February 1, 2025) Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum. International Journal of Secondary Metabolite 12 1 146–157.
IEEE
[1]Y. Başar, M. Gök, R. Erenler, and İ. Demirtas, “Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum”, Int. J. Sec. Metabolite, vol. 12, no. 1, pp. 146–157, Feb. 2025, doi: 10.21448/ijsm.1441857.
ISNAD
Başar, Yunus - Gök, Mesut - Erenler, Ramazan - Demirtas, İbrahim. “Phytochemical Profiling, Molecular Docking and ADMET Prediction of Essential Oil of Ocimum Basilicum”. International Journal of Secondary Metabolite 12/1 (February 1, 2025): 146-157. https://doi.org/10.21448/ijsm.1441857.
JAMA
1.Başar Y, Gök M, Erenler R, Demirtas İ. Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum. Int. J. Sec. Metabolite. 2025;12:146–157.
MLA
Başar, Yunus, et al. “Phytochemical Profiling, Molecular Docking and ADMET Prediction of Essential Oil of Ocimum Basilicum”. International Journal of Secondary Metabolite, vol. 12, no. 1, Feb. 2025, pp. 146-57, doi:10.21448/ijsm.1441857.
Vancouver
1.Yunus Başar, Mesut Gök, Ramazan Erenler, İbrahim Demirtas. Phytochemical profiling, molecular docking and ADMET prediction of essential oil of Ocimum basilicum. Int. J. Sec. Metabolite. 2025 Feb. 1;12(1):146-57. doi:10.21448/ijsm.1441857

Cited By

International Journal of Secondary Metabolite

e-ISSN: 2148-6905