Conserved Protein YpmR of Moderately Halophilic Bacillus licheniformis has Hydrolytic Activity on p-Nitrophenyl Laurate
Yıl 2020,
Cilt: 79 Sayı: 1, 43 - 50, 17.06.2020
Abdolie O. Touray
Ayşe Ogan
Kadir Turan
Öz
Objective: Hydrolases are of great use in many industries including food, textile, paper, detergent, and pharmaceutical production. These enzymes are abundant in all eukaryotic and prokaryotic organisms. Microbial enzymes are relatively tolerant to changes in pH, temperature and salt concentration and are capable of catalyzing reactions with high substrate specificity. Therefore they are potentially important for industrial applications. In this study we aimed to clone and characterize a hypothetically defined moderately Bacillus licheniformis YpmR enzyme, a member of the SGNH-hydrolase superfamily. Materials and Methods: The hypothetical YpmR gene was amplified with PCR using specific oligonucleotide primers and genomic DNA of B. licheniformiss. The purified PCR products were cloned under the control of Escherichia coli lac promoter. Expression of the recombinant YpmR protein in the E. coli cells was assessed using SDS-PAGE/Western blotting. The enzymatic activities were spectrophotometrically determined using p-nitrophenyl laurate (pNPL) and p-nitrophenyl acetate (pNPA). Results: The YpmR enzyme showed a 7-8 fold higher enzymatic activity against the pNPL substrate as compared to the negative controls. Hydrolysis of the pNPL substrate was found to be due to the B. licheniformis YpmR enzyme. In contrast, high hydrolytic activity in bacterial lysates not encoding YpmR enzyme on pNPA substrate indicated that the hydrolysis is due to the presence of other intracellular hydrolases. B. licheniformis YpmR enzyme was shown to be tolerant to high NaCl and Triton X-100 concentration. Conclusion: The moderate halophilic B. licheniformis hypothetical YpmR enzyme heterologously synthesized in E. coli cells has hydrolytic activity on pNPL substrate. The enzyme was observed to be more tolerant to an increase in NaCl and Triton X-100 concentrations compared to the Candida rugosa lipase enzyme used in this study as a control.
Destekleyen Kurum
This work was supported by a grant from the Marmara University Research Foundation.
Proje Numarası
FEN-CYLP-131216-0550
Teşekkür
The authors would like to thank Dr. Meral Birbir for providing us with the B. licheniformis strain.
Kaynakça
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- 7. Knizewski L, Steczkiewicz K, Kuchta K, et al. Uncharacterized DUF1574 leptospira proteins are SGNH hydrolases. Cell Cycle 2008; 7: 542-44.
- 8. Wang J, Zhang H, Wang F, et al. Enzyme-responsive polymers for drug delivery and molecular imaging. Makhlouf ASH, Abu-Thabit NY, editors. In Stimuli Responsive Polymeric Nanocarriers for Drug Delivery Applications, Woodhead Publishing 2018; V-1.p101-19.
- 9. Lo YC, Lin SC, Shaw JF, Liaw YC. Crystal structure of Escherichia coli thioesterase I/protease I/lysophospholipase L1: consensus sequence blocks constitute the catalytic center of SGNH-hydrolases through a conserved hydrogen bond network. J Mol Biol 2003; 330: 539-51.
- 10. Molgaard A, Kauppinen S, Larsen S. Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases. Structure 2000; 8: 373-83.
- 11. Jaeger KE, Reetz MT. Microbial lipases form versatile tools for biotechnology. Trends Biotechnol 1998; 16: 396-403.
- 12. Borrelli GM, Trono D. Recombinant Lipases and Phospholipases and Their Use as Biocatalysts for Industrial Applications. Int J Mol Sci 2015; 16: 20774-20840.
- 13. Sharma R, Chisti Y, Banerjee UC. Production, purification, characterization, and applications of lipases. Biotechnol Adv 2001; 19: 627-62.
- 14. Hasan F, Shah AA, Hameed A. Industrial applications of microbial lipases. Enzyme Microb Tech 2006b; 39: 235-51.
- 15. Choo DW, Kurihara T, Suzuki T, Soda K, Esaki N. A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: gene cloning and enzyme purification and characterization. Appl Environ Microbiol 1998; 64: 486-91.
- 16. Herbert RA. A perspective on the bistechnologicd potential of extremophiles. Trends Biotechnol 1992; 10: 395-402.
- 17. Adamczak M, Krishna SH. Strategies for Improving Enzymes for Efficient Biocatalysis. Food Technol Biotechnol 2004; 42: 251-64.
- 18. Reina JJ, Guerrero C, Heredia A. Isolation, characterization, and localization of AgaSGNH cDNA: a new SGNH-motif plant hydrolase specific to Agave americana L. leaf epidermis. J Exp Bot 2007; 58: 2717-31.
- 19. Lu S, Wang J, Chitsaz F, et al. CDD/SPARCLE: the conserved domain database in 2020. Nucleic Acids Res 2020; 48: D265-D268.
- 20. Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976; 72: 248-54.
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- 22. Chahinian H, Sarda L. Distinction between esterases and lipases: comparative biochemical properties of sequence-related carboxylesterases. Protein Pept Lett 2009; 16: 1149-61.
- 23. De Yan H, Zhang YJ, Liu HC, Zheng JY, Wang Z. Influence of ammonium salts on the lipase/esterase activity assay using p-nitrophenyl esters as substrates. Biotechnol Appl Biochem 2013; 60: 343-47.
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- 25. Jiang X, Xu X, Huo Y, et al. Identification and characterization of novel esterases from a deep-sea sediment metagenome. Arch Microbiol 2012; 194: 207-14.
- 26. Riedel K, Talker-Huiber D, Givskov M, Schwab H, Eberl L. Identification and characterization of a GDSL esterase gene located proximal to the swr quorum-sensing system of Serratia liquefaciens MG1. Appl Environ Microbiol 2003; 69: 3901-10.
- 27. Alvarez-Macarie E, Augier-Magro V, Baratti J. Characterization of a Thermostable Esterase Activity from the Moderate Thermophile Bacillus licheniformis. Biosci Biotechnol Biochem 1999; 63(11): 1865-70.
- 28. Torres S, Martínez MA, Pandey A, Castro GR. An organic-solvent-tolerant esterase from thermophilic Bacillus licheniformisS-86. Bioresour Technol 2009; 100(2): 896-902.
- 29. Torres S, Baigorí MD, Pandey A, Castro GR. Production and purification of a solvent-resistant esterase from Bacillus licheniformis S-86. Appl Biochem Biotechnol 2008; 151(2-3): 221-32.
- 30. Selvin J, Kennedy J, Lejon DPH, Kiran GS, Dobson ADW. Isolation identification and biochemical characterization of a novel halo-tolerant lipase from the metagenome of the marine sponge Haliclona simulans. Microb Cell Fact 2012; 11(1): 1.
- 31. Bora L, Bora M. Optimization of extracellular thermophilic highly alkaline lipase from thermophilic bacillus sp isolated from hotspring of Arunachal Pradesh, India. Brazilian J Microbiol 2012; 43(1): 30-42.
- 32. Brabcova´ J, Zarevucka M, Mackov´ M. Differences in hydrolytic abilities of two crude lipases from Geotrichum candidum 4013. Yeast 2010; 27: 1029-38.
- 33. Niyonzima FN, More S. Biochemical properties of the alkaline lipase of Bacillus flexus XJU-1 and its detergent compatibility. Biol 2014; 69(9): 1108-17.
- 34. Dumorné K, Córdova DC, Astorga-eló M, Renganathan P. Extremozymes: A Potential Source for Industrial Applications. J Microbiol Biotechnol 2017; 27: 649-59.
- 35. Bora L. Purification and characterization of highly alkaline lipase from Bacillus licheniformisMTCC 2465: And study of its detergent compatibility and applicability. J Surfactants Deterg 2014; 17(5): 889-98.
- 36. Gupta S, Sharma P, Dev K, Sourirajan A. Halophilic Bacteria of Lunsu Produce an Array of Industrially Important Enzymes with Salt Tolerant Activity. Biochem Res Int. 2016; 2016(1): 1-10.
- 37. Annamalai N, Elayaraja S, Vijayalakshmi S, Balasubramanian T. Thermostable, alkaline tolerant lipase from Bacillus licheniformisusing peanut oil cake as a substrate. African J Biochem Res 2011; 5(6): 176-81.
- 38. Fitter J, Haber-Pohlmeier S. Structural stability and unfolding properties of thermostable bacterial alpha-amylases: a comparative study of homologous enzymes. Biochemistry 2004; 43: 9589-99.
- 39. Parvaresh F, Vic G, Thomas D, Legoy MD. Uses and potentialities of thermostable enzymes. Ann N Y Acad Sci 1990; 613: 303-12.
- 40. Ward OP, Moo-Young M. Thermostable enzymes. Biotechnol Adv 1988; 6: 39-69.
- 41. Chien A, Edgar DB, Trela JM. Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus. J Bacteriol 1976; 127: 1550-57.
- 42. Li X, Yu H-Y. Characterization of a novel extracellular lipase from a halophilic isolate, Chromohalobacter sp. LY7-8. Afr J Microbiol Res 2012; 6: 3516-22.
- 43. Esteban-Torresa M. Mancheño JM, Rivasa B, Muñoz R. Characterization of a halotolerant lipase from the lactic acid bacteria Lactobacillus plantarum useful in food fermentations. LWT-Food Sci Technol 2015; 60: 246-52.
- 44. Ozgen M, Attar A, Elalmis Y, Birbir M, Yucel S. Enzymatic activity of a novel halotolerant lipase from Haloarcula hispanica 2TK2. Polish J Chem Technol 2016; 18: 20-25.
- 45. Saraswat R, Verma V, Sistla S, Bhushan I. Evaluation of alkali and thermotolerant lipase from an indigenous isolated Bacillus strain for detergent formulation. Electron J Biotechnol 2017; 30: 33-8.
Yıl 2020,
Cilt: 79 Sayı: 1, 43 - 50, 17.06.2020
Abdolie O. Touray
Ayşe Ogan
Kadir Turan
Proje Numarası
FEN-CYLP-131216-0550
Kaynakça
- 1. Bornscheuer UT. Microbial carboxyl esterases: classification, properties and application in biocatalysis. FEMS Microbiol Rev 2002; 26: 73-81.
- 2. Bae SY, Ryu BH, Jang E, Kim S, Kim TD. Characterization and immobilization of a novel SGNH hydrolase (Est24) from Sinorhizobium meliloti. Appl Microbiol Biotechnol 2013; 97: 1637-47.
- 3. Casas-Godoy L, Duquesne S, Bordes F, Sandoval G, Marty A. Lipases: an overview. Methods Mol Biol 2012; 861: 3-30.
- 4. Sharma S, Kanwar SS: Organic solvent tolerant lipases and applications. Scientific World Journal 2014; 2014: 625258.
- 5. Akoh CC, Lee GC, Liaw YC, Huang TH, Shaw JF. GDSL family of serine esterases/lipases. Prog Lipid Res 2004; 43: 534-52.
- 6. Holmquist M. Alpha Beta-Hydrolase Fold Enzymes Structures, Functions and Mechanisms. Curr Protein Pept Sc 2005; 1: 209-35.
- 7. Knizewski L, Steczkiewicz K, Kuchta K, et al. Uncharacterized DUF1574 leptospira proteins are SGNH hydrolases. Cell Cycle 2008; 7: 542-44.
- 8. Wang J, Zhang H, Wang F, et al. Enzyme-responsive polymers for drug delivery and molecular imaging. Makhlouf ASH, Abu-Thabit NY, editors. In Stimuli Responsive Polymeric Nanocarriers for Drug Delivery Applications, Woodhead Publishing 2018; V-1.p101-19.
- 9. Lo YC, Lin SC, Shaw JF, Liaw YC. Crystal structure of Escherichia coli thioesterase I/protease I/lysophospholipase L1: consensus sequence blocks constitute the catalytic center of SGNH-hydrolases through a conserved hydrogen bond network. J Mol Biol 2003; 330: 539-51.
- 10. Molgaard A, Kauppinen S, Larsen S. Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases. Structure 2000; 8: 373-83.
- 11. Jaeger KE, Reetz MT. Microbial lipases form versatile tools for biotechnology. Trends Biotechnol 1998; 16: 396-403.
- 12. Borrelli GM, Trono D. Recombinant Lipases and Phospholipases and Their Use as Biocatalysts for Industrial Applications. Int J Mol Sci 2015; 16: 20774-20840.
- 13. Sharma R, Chisti Y, Banerjee UC. Production, purification, characterization, and applications of lipases. Biotechnol Adv 2001; 19: 627-62.
- 14. Hasan F, Shah AA, Hameed A. Industrial applications of microbial lipases. Enzyme Microb Tech 2006b; 39: 235-51.
- 15. Choo DW, Kurihara T, Suzuki T, Soda K, Esaki N. A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: gene cloning and enzyme purification and characterization. Appl Environ Microbiol 1998; 64: 486-91.
- 16. Herbert RA. A perspective on the bistechnologicd potential of extremophiles. Trends Biotechnol 1992; 10: 395-402.
- 17. Adamczak M, Krishna SH. Strategies for Improving Enzymes for Efficient Biocatalysis. Food Technol Biotechnol 2004; 42: 251-64.
- 18. Reina JJ, Guerrero C, Heredia A. Isolation, characterization, and localization of AgaSGNH cDNA: a new SGNH-motif plant hydrolase specific to Agave americana L. leaf epidermis. J Exp Bot 2007; 58: 2717-31.
- 19. Lu S, Wang J, Chitsaz F, et al. CDD/SPARCLE: the conserved domain database in 2020. Nucleic Acids Res 2020; 48: D265-D268.
- 20. Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976; 72: 248-54.
- 21. Wang B, Wang A, Cao Z, Zhu G. Characterization of a novel highly thermostable esterase from the Gram-positive soil bacterium Streptomyces lividans TK64. Biotechnol Appl Biochem 2016; 63: 334-43.
- 22. Chahinian H, Sarda L. Distinction between esterases and lipases: comparative biochemical properties of sequence-related carboxylesterases. Protein Pept Lett 2009; 16: 1149-61.
- 23. De Yan H, Zhang YJ, Liu HC, Zheng JY, Wang Z. Influence of ammonium salts on the lipase/esterase activity assay using p-nitrophenyl esters as substrates. Biotechnol Appl Biochem 2013; 60: 343-47.
- 24. Fu C, Hu Y, Xie F, et al. Molecular cloning and characterization of a new cold-active esterase from a deep-sea metagenomic library. Appl Microbiol Biotechnol 2011; 90 961-70.
- 25. Jiang X, Xu X, Huo Y, et al. Identification and characterization of novel esterases from a deep-sea sediment metagenome. Arch Microbiol 2012; 194: 207-14.
- 26. Riedel K, Talker-Huiber D, Givskov M, Schwab H, Eberl L. Identification and characterization of a GDSL esterase gene located proximal to the swr quorum-sensing system of Serratia liquefaciens MG1. Appl Environ Microbiol 2003; 69: 3901-10.
- 27. Alvarez-Macarie E, Augier-Magro V, Baratti J. Characterization of a Thermostable Esterase Activity from the Moderate Thermophile Bacillus licheniformis. Biosci Biotechnol Biochem 1999; 63(11): 1865-70.
- 28. Torres S, Martínez MA, Pandey A, Castro GR. An organic-solvent-tolerant esterase from thermophilic Bacillus licheniformisS-86. Bioresour Technol 2009; 100(2): 896-902.
- 29. Torres S, Baigorí MD, Pandey A, Castro GR. Production and purification of a solvent-resistant esterase from Bacillus licheniformis S-86. Appl Biochem Biotechnol 2008; 151(2-3): 221-32.
- 30. Selvin J, Kennedy J, Lejon DPH, Kiran GS, Dobson ADW. Isolation identification and biochemical characterization of a novel halo-tolerant lipase from the metagenome of the marine sponge Haliclona simulans. Microb Cell Fact 2012; 11(1): 1.
- 31. Bora L, Bora M. Optimization of extracellular thermophilic highly alkaline lipase from thermophilic bacillus sp isolated from hotspring of Arunachal Pradesh, India. Brazilian J Microbiol 2012; 43(1): 30-42.
- 32. Brabcova´ J, Zarevucka M, Mackov´ M. Differences in hydrolytic abilities of two crude lipases from Geotrichum candidum 4013. Yeast 2010; 27: 1029-38.
- 33. Niyonzima FN, More S. Biochemical properties of the alkaline lipase of Bacillus flexus XJU-1 and its detergent compatibility. Biol 2014; 69(9): 1108-17.
- 34. Dumorné K, Córdova DC, Astorga-eló M, Renganathan P. Extremozymes: A Potential Source for Industrial Applications. J Microbiol Biotechnol 2017; 27: 649-59.
- 35. Bora L. Purification and characterization of highly alkaline lipase from Bacillus licheniformisMTCC 2465: And study of its detergent compatibility and applicability. J Surfactants Deterg 2014; 17(5): 889-98.
- 36. Gupta S, Sharma P, Dev K, Sourirajan A. Halophilic Bacteria of Lunsu Produce an Array of Industrially Important Enzymes with Salt Tolerant Activity. Biochem Res Int. 2016; 2016(1): 1-10.
- 37. Annamalai N, Elayaraja S, Vijayalakshmi S, Balasubramanian T. Thermostable, alkaline tolerant lipase from Bacillus licheniformisusing peanut oil cake as a substrate. African J Biochem Res 2011; 5(6): 176-81.
- 38. Fitter J, Haber-Pohlmeier S. Structural stability and unfolding properties of thermostable bacterial alpha-amylases: a comparative study of homologous enzymes. Biochemistry 2004; 43: 9589-99.
- 39. Parvaresh F, Vic G, Thomas D, Legoy MD. Uses and potentialities of thermostable enzymes. Ann N Y Acad Sci 1990; 613: 303-12.
- 40. Ward OP, Moo-Young M. Thermostable enzymes. Biotechnol Adv 1988; 6: 39-69.
- 41. Chien A, Edgar DB, Trela JM. Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus. J Bacteriol 1976; 127: 1550-57.
- 42. Li X, Yu H-Y. Characterization of a novel extracellular lipase from a halophilic isolate, Chromohalobacter sp. LY7-8. Afr J Microbiol Res 2012; 6: 3516-22.
- 43. Esteban-Torresa M. Mancheño JM, Rivasa B, Muñoz R. Characterization of a halotolerant lipase from the lactic acid bacteria Lactobacillus plantarum useful in food fermentations. LWT-Food Sci Technol 2015; 60: 246-52.
- 44. Ozgen M, Attar A, Elalmis Y, Birbir M, Yucel S. Enzymatic activity of a novel halotolerant lipase from Haloarcula hispanica 2TK2. Polish J Chem Technol 2016; 18: 20-25.
- 45. Saraswat R, Verma V, Sistla S, Bhushan I. Evaluation of alkali and thermotolerant lipase from an indigenous isolated Bacillus strain for detergent formulation. Electron J Biotechnol 2017; 30: 33-8.