Genome-wide Analysis and Functional Identification of KCS Gene Family under Drought and Salt Stresses in Phaseolus vulgaris L

Ceren Yılmaz; Merve Yüce; Ahmed Sidar Aygören; Ayşe Gül Kasapoğlu; Selman Muslu; Murat Turan; Emre İlhan; Murat Aydın; Ertan Yıldırım

doi:10.56430/japro.1371633

EN

Genome-wide Analysis and Functional Identification of KCS Gene Family under Drought and Salt Stresses in Phaseolus vulgaris L

Abstract

β-ketoacyl-CoA synthase (KCS) is an important enzyme that catalyzes the biosynthesis of very-long-chain fatty acids (VLCFAs). In this study, the genome-wide analysis and functional characterization of the KCS gene family members in common bean (Phaseolus vulgaris L.) plants were conducted, and the response of the identified gene family to abiotic stresses was evaluated. In this study, 19 KCS genes were identified and characterized in the P. vulgaris genome. The molecular weights of these KCS proteins ranged from 49.14 kDa to 60.57 kDa, their amino acid lengths varied from 437 to 534, and their pI values ranged from 8.81 to 9.47, indicating a basic nature. Segmental and tandem duplications were observed in the Pvul-KCS gene family. Phylogenetic analysis revealed that Pvul-KCS proteins clustered into three main groups with Arabidopsis thaliana and Glycine max species. Comparative mapping analysis was also conducted with A. thaliana and G. max. Expression profile comparisons indicated that these genes had different expression levels in common bean varieties and played a role in the plant’s response to biotic and abiotic stresses. This study provides important insights into the biological functions of KCS genes in Phaseolus vulgaris and offers valuable information for improving drought and salt stress tolerance in common beans.

Keywords

Genome-wide analysis , KCS , Phaseolus vulgaris L , VLCFA

References

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Details

Primary Language

English

Subjects

Plant Biotechnology in Agriculture

Journal Section

Research Article

Authors

Ceren Yılmaz
0009-0005-2939-3332
Türkiye

Merve Yüce
0000-0002-0113-7071
Türkiye

Ahmed Sidar Aygören
0000-0002-6264-9935
Türkiye

Ayşe Gül Kasapoğlu
0000-0002-6447-4921
Türkiye

Selman Muslu
0000-0003-4777-0726
Türkiye

Murat Turan
0000-0003-2900-1755
Türkiye

Emre İlhan
0000-0002-8404-7900
Türkiye

Murat Aydın
0000-0003-1091-0609
Türkiye

Ertan Yıldırım ^*
0000-0003-3369-0645
Türkiye

Early Pub Date

December 30, 2023

Publication Date

December 30, 2023

Submission Date

October 5, 2023

Acceptance Date

November 10, 2023

Published in Issue

Year 2023 Volume: 4 Number: 2

DOI

https://doi.org/10.56430/japro.1371633

IZ

https://izlik.org/JA46KF66YP

APA

Yılmaz, C., Yüce, M., Aygören, A. S., Kasapoğlu, A. G., Muslu, S., Turan, M., İlhan, E., Aydın, M., & Yıldırım, E. (2023). Genome-wide Analysis and Functional Identification of KCS Gene Family under Drought and Salt Stresses in Phaseolus vulgaris L. Journal of Agricultural Production, 4(2), 138-151. https://doi.org/10.56430/japro.1371633

Cited By

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Genomics of iron and zinc concentration, iron bioavailability, and yield in common bean: Multi‐locus GWAS, structural equation modelling, candidate gene prioritization and genomic selection

Crop Science

https://doi.org/10.1002/csc2.70262

Genome-wide Analysis and Functional Identification of KCS Gene Family under Drought and Salt Stresses in Phaseolus vulgaris L

Abstract

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Öz

References

Details

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Subjects

Journal Section

Authors

Early Pub Date

Publication Date

Submission Date

Acceptance Date

Published in Issue

DOI

IZ

Cite

Cited By

Identification and Expression Pattern Analysis of the β-Ketoacyl-CoA Synthase (KCS) Gene Family in Castor (Ricinus communis L.)

Genomics of iron and zinc concentration, iron bioavailability, and yield in common bean: Multi‐locus GWAS, structural equation modelling, candidate gene prioritization and genomic selection