Research Article

Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum

Volume: 11 Number: 33 December 28, 2017
Didem Sutay Kocabaş *, Eren Yurtdaş

Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum

Abstract

Xylanases are hydrolytic enzymes which lately attracted increasing attention due to their broad use in different industrial processes. Scytalidium thermophilum xylanase was previously shown by our research group to be a potential candidate for the industry. Therefore, the aim of this study was to optimize the crystal growth conditions of xylanase for further structural studies. Initial crystallization conditions were screened by using commercial kits with sitting drop vapor diffusion method. Consequently, optimization studies were carried out by changing the xylanase concentration, pH, reservoir solution to xylanase ratio in the drop and precipitant concentration. As a result of the study, the best xylanase crystal was obtained from the solution containing 1.8 M ammonium citrate dibasic, 0.1 M sodium acetate trihydrate at pH 4.6 and 2 mg/ml enzyme at 18°C with streak seeding. The largest and well shaped single xylanase crystal at a size of 320 μm with a light-brown color, which has the potential as a starting point of further X-ray diffraction analysis and structural studies, was obtained.

Keywords

Scytalidium thermophilum, Xylanase, Protein crystallization

References

  1. Beg QK, Kapoor M, Mahajan L, Hoondal GS (2001). Microbial xylanases and their industrial applications: a review. Appl Microbiol Biot 56: 326-338.
  2. Blum H, Beier H, Gross HJ (1987). Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 8: 93-99.
  3. Brader ML, Baker EN, Dunn MF, Laue TM, Carpenter JF (2017). Using X-ray crystallography to simplify and accelerate biologics drug development. J Pharm Sci 106: 477-494.
  4. Bradford MM (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
  5. Büttner FM, Renner-Schneck, Stehle T (2015). X-ray crystallography and its impact on understanding bacterial cell wall remodeling processes. Int J Med Microbiol 305: 209-216.
  6. Camara-Artigas A, Gavira JA (2016). Macromolecular crystallography: An old science with new perspectives. Arch Biochem Biophys 602:1-2.
  7. Chayen NE (2004). Turning protein crystallisation from an art into a science. Curr Opin Struc Biol 14: 577-583.
  8. Chayen NE, Saridakis E (2008). Protein crystallization: from purified protein to diffraction-quality crystal. Nat Methods 5: 147-53.
  9. Collins T, Gerday C, Feller G (2005). Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol Rev 29: 3-23.
  10. Dimarogona M, Topakas E, Christakopoulos P, Chrysina ED (2012). The structure of a GH10 xylanase from Fusarium oxysporum reveals the presence of an extended loop on top of the catalytic cleft. Acta Crystallogr D 68: 735-7422.
APA
Sutay Kocabaş, D., & Yurtdaş, E. (2017). Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum. Journal of Biological and Environmental Sciences, 11(33), 129-136. https://izlik.org/JA24SU45SH
AMA
1.Sutay Kocabaş D, Yurtdaş E. Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum. JBES. 2017;11(33):129-136. https://izlik.org/JA24SU45SH
Chicago
Sutay Kocabaş, Didem, and Eren Yurtdaş. 2017. “Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium Thermophilum”. Journal of Biological and Environmental Sciences 11 (33): 129-36. https://izlik.org/JA24SU45SH.
EndNote
Sutay Kocabaş D, Yurtdaş E (December 1, 2017) Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum. Journal of Biological and Environmental Sciences 11 33 129–136.
IEEE
[1]D. Sutay Kocabaş and E. Yurtdaş, “Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum”, JBES, vol. 11, no. 33, pp. 129–136, Dec. 2017, [Online]. Available: https://izlik.org/JA24SU45SH
ISNAD
Sutay Kocabaş, Didem - Yurtdaş, Eren. “Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium Thermophilum”. Journal of Biological and Environmental Sciences 11/33 (December 1, 2017): 129-136. https://izlik.org/JA24SU45SH.
JAMA
1.Sutay Kocabaş D, Yurtdaş E. Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum. JBES. 2017;11:129–136.
MLA
Sutay Kocabaş, Didem, and Eren Yurtdaş. “Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium Thermophilum”. Journal of Biological and Environmental Sciences, vol. 11, no. 33, Dec. 2017, pp. 129-36, https://izlik.org/JA24SU45SH.
Vancouver
1.Didem Sutay Kocabaş, Eren Yurtdaş. Crystallization Studies of a Low Molecular Weight Xylanase from Scytalidium thermophilum. JBES [Internet]. 2017 Dec. 1;11(33):129-36. Available from: https://izlik.org/JA24SU45SH