Review

DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential

Volume: 30 Number: 2 March 15, 2026
EN

DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential

Abstract

Triple-negative breast cancer (TNBC) is a highly aggressive and heterogeneous breast cancer subtype that lacks estrogen receptor (ER), progesterone receptor (PR), and HER2 amplification. Its aggressiveness, restricted therapeutic targets, and early susceptibility to metastasize make it a major clinical challenge. Accumulating evidence suggests the critical role of DNA methylation, in TNBC progression, immune evasion, and resistance to conventional therapies. DNA methyltransferases (DNMT1, DNMT3A, and DNMT3B) which modifies DNA methylation, tend to be overexpressed in TNBC and regulate gene silencing programs that affect tumor suppressor genes, hormone receptor expression (e.g., ESR1 and PGR), cell adhesion molecules, and DNA damage response pathways. This review incorporates findings from recent genomic and epigenomic studies to provide insights into the mechanisms by which DNMT-mediated methylation profiles contribute to TNBC biology and therapy resistance. In addition, it addresses the therapeutic landscape of DNMT inhibitors (DNMTis). Preclinical studies reveal that DNMTis have the potential to repair aberrant methylation, restore hormone receptor expression, make TNBC cells chemosensitive and immunological checkpoint blockable, and suppress cancer stem cell populations. Nevertheless, their clinical usage is still limited by drawbacks such as inadequate pharmacokinetic properties, off-target toxicity, and the unavailability of powerful epigenetic biomarkers to stratify patients. In light of these limitations, the potential future of epigenetic therapy in TNBC would be rational combination strategies, biomarker-based patient screening, and mechanism-driven drug design. Understanding the nature of DNA methylation not only offers with it new promises for intervention but also valuable information regarding the molecular basis of this problematic disease subset.

Keywords

Supporting Institution

This study was supported by the Marmara University Research Foundation under Grant (Project ID: TYL-2024-11188) and The Scientific and Technology Research Council of Turkey (Project ID: 424S199).

Ethical Statement

Not applicable for this study.

References

  1. [1] Cooper GM, The Cell: A Molecular Approach, second ed., Sunderland (MA): Sinauer Associates, USA 2000.
  2. [2] Kanwal R, Gupta S. Epigenetic modifications in cancer. Clin Genet. 2012;81(4):303-311. https://doi.org/10.1111/j.1399-0004.2011.01809.x
  3. [3] Fisel P, Schaeffeler E, Schwab M. DNA Methylation of ADME Genes. Clin Pharmacol Ther. 2016;99(5):512-527. https://doi.org/10.1002/cpt.343
  4. [4] Deaton AM, Bird A. CpG islands and the regulation of transcription. Genes Dev. 2011;25(10):1010-1022. https://doi.org/10.1101/gad.2037511
  5. [5] Weaver IC. Epigenetic programming by maternal behavior and pharmacological intervention. Nature versus nurture: let's call the whole thing off. Epigenetics. 2007;2(1):22-28. https://doi.org/10.4161/epi.2.1.3881
  6. [6] Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, Bray F. Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries. CA Cancer J Clin. 2021;71(3):209-249. https://doi.org/10.3322/caac.21660
  7. [7] World Health Organization. https://gco.iarc.fr/ (accessed August 03, 2023)
  8. [8] Özmen V, Özmen T, Doğru V. Breast Cancer in Turkey; An Analysis of 20.000 Patients with Breast Cancer. Eur J Breast Health. 2019 Jul 1;15(3):141-146. doi: 10.5152/ejbh.2019.4890. Erratum in: Eur J Breast Health. 2019;15(4):276. https://doi.org/10.5152/ejbh.2019.4890

Details

Primary Language

English

Subjects

Pharmaceutical Toxicology

Journal Section

Review

Publication Date

March 15, 2026

Submission Date

May 8, 2025

Acceptance Date

May 28, 2025

Published in Issue

Year 2026 Volume: 30 Number: 2

APA
Kibar, T., Yeşil, T., & Karslı, S. (2026). DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential. Journal of Research in Pharmacy, 30(2), 644-659. https://doi.org/10.12991/jrespharm.1693168
AMA
1.Kibar T, Yeşil T, Karslı S. DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential. J. Res. Pharm. 2026;30(2):644-659. doi:10.12991/jrespharm.1693168
Chicago
Kibar, Tuçe, Tuğçe Yeşil, and Seher Karslı. 2026. “DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential”. Journal of Research in Pharmacy 30 (2): 644-59. https://doi.org/10.12991/jrespharm.1693168.
EndNote
Kibar T, Yeşil T, Karslı S (March 1, 2026) DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential. Journal of Research in Pharmacy 30 2 644–659.
IEEE
[1]T. Kibar, T. Yeşil, and S. Karslı, “DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential”, J. Res. Pharm., vol. 30, no. 2, pp. 644–659, Mar. 2026, doi: 10.12991/jrespharm.1693168.
ISNAD
Kibar, Tuçe - Yeşil, Tuğçe - Karslı, Seher. “DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential”. Journal of Research in Pharmacy 30/2 (March 1, 2026): 644-659. https://doi.org/10.12991/jrespharm.1693168.
JAMA
1.Kibar T, Yeşil T, Karslı S. DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential. J. Res. Pharm. 2026;30:644–659.
MLA
Kibar, Tuçe, et al. “DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential”. Journal of Research in Pharmacy, vol. 30, no. 2, Mar. 2026, pp. 644-59, doi:10.12991/jrespharm.1693168.
Vancouver
1.Tuçe Kibar, Tuğçe Yeşil, Seher Karslı. DNA Methyltransferase Inhibitors in Triple-Negative Breast Cancer: Mechanisms, Limitations, and Therapeutic Potential. J. Res. Pharm. 2026 Mar. 1;30(2):644-59. doi:10.12991/jrespharm.1693168