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A Preliminary mitochondrial cytochrome c oxidase-I-based phylogeographic and phylogenetic analysis of Eurasian Acanthocinus griseus (Coleoptera, Cerambycidae)

Year 2023, Volume: 11 Issue: 2, 66 - 78, 28.09.2023
https://doi.org/10.31195/ejejfs.1260360

Abstract

Acanthocinus griseus (Fabricius, 1792) (Coleoptera: Cerambycidae, Lamiinae, Acanthocinini) has long been known for its role in the decay process of the wood in the forest ecosystem, and two critical features of the species, inhabiting standing trees and being a vector of pine wood nematodes Bursaphelenchus spp., have been noted recently. Therefore, understanding the current relationships and possible migration scenarios has been further required to assess invasion risks. The present work provided a preliminary comprehension of the phylogenetic relationships of A. griseus based on the mitochondrial cytochrome c oxidase-I (COI) gene region (658 bp), with sequences produced in the present study, from the specimens collected from timberyards, ports and forests of Kocaeli Province, Turkey, and with available sequences in GenBank of inhabitants of Eurasia, and of intercepted specimens in ports. The intraspecific genetic distance of A. griseus was 1.37-0,3%, while the interspecific distance was 10,79-13,37%, except the closeness of an A. griseus haplotype (AGR1) to A. sachalinensis (0,3%) more than its conspecifics (4,71-5,47%). The ML and BI analyses suggested identical topologies. The statistical parsimony network drew a reticular branching diagram without grouping across countries or geographic regions, which addresses ongoing gene flow. Most haplotypes from Turkey were clustered around a central haplotype (AGR11), which may point to a bottleneck effect. A haplotype previously intercepted in USA ports was identical to a haplotype sampled in Kocaeli. The present study suggests that the relationship between A. griseus and A. sachalinensis should be reconsidered from both morphological and molecular points of view. In addition, the possible ongoing intraspecific gene flow within A. griseus might be due to facilitated migration by the international wood trade.

Supporting Institution

Kocaeli University

Project Number

BAP-139-2018

References

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Year 2023, Volume: 11 Issue: 2, 66 - 78, 28.09.2023
https://doi.org/10.31195/ejejfs.1260360

Abstract

Project Number

BAP-139-2018

References

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  • Folmer, O., Black, M., Hoeh, W., Lutz, R., Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3(5), 294-299.
  • Fukuda, K. (1997). Physiological process of the symptom development and resistance mechanism in pine wilt disease. Journal of forest research, 2(3), 171-181.
  • Grebennikov, V.V., Jendek, E., Smirnov, M.E. (2017). Diagnostic and phylogenetic utility of the first DNA barcode library for longhorn beetles (Coleoptera: Cerambycidae) from the Russian Far East. Zootaxa, 4276(3), 441-445.
  • Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59(3), 307-321. doi.org/10.1093/sysbio/syq010
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  • Hajibabaei, M., Smith, M. A., Janzen, D. H., Rodriguez, J. J., Whitfield, J. B., Hebert, P. D. (2006). A minimalist barcode can identify a specimen whose DNA is degraded. Molecular Ecology Notes, 6(4), 959-964.
  • Hebert, P. D., Ratnasingham, S., De Waard, J. R. (2003). Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London. Series B: Biological Sciences, 270(suppl_1), S96-S99.
  • Hebert, P.D., Penton, E.H., Burns, J.M., Janzen, D.H., Hallwachs, W., (2004a). Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences, 101(41), 14812-14817.
  • Hebert, P.D., Stoeckle, M.Y., Zemlak, T.S., Francis, C.M., (2004b). Identification of birds through DNA barcodes. PLoS Biol. 2 (10).
  • Hernández-Triana, L.M., Chaverri, L.G., Rodriguez-Perez, M.A., Prosser, S.W., Hebert, P.D., Gregory, T.R., Johnson, N. (2015). DNA barcoding of Neotropical black flies (Diptera: Simuliidae): Species identification and discovery of cryptic diversity in Mesoamerica. Zootaxa, 3936(1), 93-114.
  • Hulme, P.E. (2009). Trade, transport and trouble: managing invasive species pathways in an era of globalisation. Journal of Applied Ecology, 46(1), 10-18.
  • Hurst, G.D., Jiggins, F.M. (2005). Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society B: Biological Sciences, 272(1572), 1525-1534.
  • Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., ... Drummond, A. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organisation and analysis of sequence data. Bioinformatics, 28(12), 1647-1649. doi.org/10.1093/bioinformatics/bts199
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K. (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6), 1547. doi.org/10.1093/molbev/msy096
  • Lanfear, R., Frandsen, P.B., Wright, A.M., Senfeld, T., Calcott, B. (2017). PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution, 34(3), 772-773.
  • Leigh, J. W., Bryant, D. (2015) POPART: full-feature software for haplotype network construction. Methods in Ecology and Evolution 6(9), 1110-1116. doi.org/10.1111/2041-210X.12410
  • Lindhe, A., Jeppsson, T., Ehnström, B. (2010). Longhorn beetles in Sweden-changes in distribution and abundance over the last two hundred years. Entomologisk Tidskrift, 131(4), 241-508.
  • Linit, M. J. (1988). Nematode-vector relationships in the pine wilt disease system. Journal of Nematology, 20, 227-235.
  • Martikainen, P. (2002). Ecology and conservation status of Acanthocinus griseus (Fabricius, 1792)(Coleoptera: Cerambycidae) in Finland. Entomologica Fennica, 13(1), 41-50.
  • Moritz, C., Cicero, C. Godfray, C. (2004) DNA barcoding: promise and pitfalls. PLoS biology 2(10), e354. doi.org/10.1371/journal.pbio.0020354
  • Paterson, I.D., Mangan, R., Downie, D.A., Coetzee, J.A., Hill, M.P., Burke,A. M., ... Compton, S.G. (2016). Two in one: cryptic species discovered in biological control agent populations using molecular data and crossbreeding experiments. Ecology and Evolution, 6(17), 6139-6150.
  • Pentinsaari, M., Hebert, P.D., Mutanen, M. (2014) Barcoding beetles: a regional survey of 1872 species reveals high identification success and unusually deep interspecific divergences. PLoS One 9(9): e108651. doi.org/10.1371/journal.pone.0108651
  • Richards, E.J., Servedio, M.R., Martin, C.H. (2019) Searching for sympatric speciation in the genomic era. BioEssays, 41(7), 1900047. doi.org/10.1002/bies.201900047
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There are 62 citations in total.

Details

Primary Language English
Subjects Ecological Physiology, Terrestrial Ecology
Journal Section Articles
Authors

Aynur Abbaszada 0000-0001-5773-6025

Fevzi Uçkan 0000-0001-9304-4296

Havva Kübra Soydabaş-ayoub 0000-0002-5215-6117

Project Number BAP-139-2018
Early Pub Date September 20, 2023
Publication Date September 28, 2023
Submission Date March 5, 2023
Published in Issue Year 2023 Volume: 11 Issue: 2

Cite

APA Abbaszada, A., Uçkan, F., & Soydabaş-ayoub, H. K. (2023). A Preliminary mitochondrial cytochrome c oxidase-I-based phylogeographic and phylogenetic analysis of Eurasian Acanthocinus griseus (Coleoptera, Cerambycidae). Eurasian Journal of Forest Science, 11(2), 66-78. https://doi.org/10.31195/ejejfs.1260360

E-mail: Hbarist@gmail.com 

ISSN: 2147-7493

Eurasian Journal of Forest Science © 2013 is licensed under CC BY 4.0