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Year 2023, Volume: 1 Issue: 2, 74 - 84, 21.12.2023
https://doi.org/10.26650/PAR.2023.00009

Abstract

References

  • Alam M., Ahmed S., Elasbali A. M., Adnan M., Alam S., Hassan M. google scholar
  • I., Pasupuleti V. R., 2022, Front. Oncol., 12, 860508 google scholar
  • Ali I., Lone M. N., Alothman Z. A., Alwarthan A., 2017, J. Mol. Liq., 234, 391 google scholar
  • Bıçak B., 2023, J. Biomol. Struct. Dyn., 1 google scholar
  • Bıçak B., Keçel Gündüz S., Budama Kılınc Y., Imhof P., Gök B., Akman G., Özel A. E., 2022, J. Biomol. Struct. Dyn., 40, 12148 google scholar
  • DeLano W. L., 2002, Protein Crystallogr, 40, 82 google scholar
  • Drew H. R., Wing R. M., Takano T., Broka C., Tanaka S., Itakura K., Dickerson R. E., 1981, PNAS, 78, 2179 google scholar
  • Frisch M. J., et al., 2009, Gaussian, Inc., Wallingford CT google scholar
  • Jung J. E., et al., 2007, Carcinog., 28, 1780 google scholar
  • Kang N. J. et al., 2011, Carcinog., 32, 921 google scholar
  • Kianmehr Z., Khorsandi K., Mohammadi M., Hosseinzadeh R., 2020, Melanoma Res., 30, 136 google scholar
  • Kim S., et al., 2023, Nucleic Acids Res., 51, D1373 google scholar
  • Korkina L., 2007, Cellular and Molecular Biology, 53, 15 google scholar
  • Niciforovic N., Abramovic H., 2014, CRFSFS, 13, 34 google scholar
  • pkCSM: predicting small-molecule pharmacokinetic properties using graph-based signatures. Available online: URL (accessed on 10 September 2023) google scholar
  • Pires D. E., Blundell T. L., Ascher D. B., 2015, J. Med. Chem., 58, 4066 google scholar
  • Roychoudhury S. et al., 2021, Antioxidants, 10, 1205 google scholar
  • Saraç K., 2018, Bitlis Eren Üniversitesi Fen Bilimleri Dergisi, 7, 311 google scholar
  • Sreejith S., Mohan N., Kurup M. P., 2017, Polyhedron, 135, 278 google scholar
  • Trott O., Olson A. J., 2010, J. Comput. Chem., 31, 455 google scholar
  • Tsao R., Deng Z., 2004, J. Chromatogr. B., 812, 85 google scholar
  • Zdunska K., Dana A., Kolodziejczak A., Rotsztejn H., 2018, Skin Pharmacol Physiol., 31, 332 google scholar
  • Zhang G., Zhou Z., Xu J., Liao Y., Hu X., 2019, J. Biomol. Struct. Dyn., 38, 1 google scholar

A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids

Year 2023, Volume: 1 Issue: 2, 74 - 84, 21.12.2023
https://doi.org/10.26650/PAR.2023.00009

Abstract

Phytochemicals are important compounds produced by plants that have various beneficial effects on human health. These compounds are found in plant structures and are known to exhibit properties such as anticancer, antioxidant, and antiviral effects, making them valuable for medical studies as potential active ingredients for drugs. Phenolic compounds are compounds that have a protective effect in various disease classes such as cardiovascular diseases, cancer, and neurodegenerative diseases. Hydroxycinnamic acids are also phenolic compounds, and prominent groups of compounds include p-coumaric acid, caffeic acid, sinapic acid and ferulic acid. These compounds are known to have various therapeutic effects, from antioxidant to anticancer effects. DNA, one of the receptors used as a target in anticancer studies, is targeted by small molecules with therapeutic effect. Theoretically, an estimate of such interactions can be made at the atomic level with the molecular docking method. In addition, pharmacokinetic properties can be determined by making estimations of absorption, distribution, metabolism, excretion, and toxicity of drug candidate molecules with ADMET studies. In this study, optimized structures, chemical stability, interactions with DNA and ADMET profiles of hydroxycinnamic acids (caffeic acid, ferulic acid, p-coumaric acid, and sinapic acid) were elucidated.

References

  • Alam M., Ahmed S., Elasbali A. M., Adnan M., Alam S., Hassan M. google scholar
  • I., Pasupuleti V. R., 2022, Front. Oncol., 12, 860508 google scholar
  • Ali I., Lone M. N., Alothman Z. A., Alwarthan A., 2017, J. Mol. Liq., 234, 391 google scholar
  • Bıçak B., 2023, J. Biomol. Struct. Dyn., 1 google scholar
  • Bıçak B., Keçel Gündüz S., Budama Kılınc Y., Imhof P., Gök B., Akman G., Özel A. E., 2022, J. Biomol. Struct. Dyn., 40, 12148 google scholar
  • DeLano W. L., 2002, Protein Crystallogr, 40, 82 google scholar
  • Drew H. R., Wing R. M., Takano T., Broka C., Tanaka S., Itakura K., Dickerson R. E., 1981, PNAS, 78, 2179 google scholar
  • Frisch M. J., et al., 2009, Gaussian, Inc., Wallingford CT google scholar
  • Jung J. E., et al., 2007, Carcinog., 28, 1780 google scholar
  • Kang N. J. et al., 2011, Carcinog., 32, 921 google scholar
  • Kianmehr Z., Khorsandi K., Mohammadi M., Hosseinzadeh R., 2020, Melanoma Res., 30, 136 google scholar
  • Kim S., et al., 2023, Nucleic Acids Res., 51, D1373 google scholar
  • Korkina L., 2007, Cellular and Molecular Biology, 53, 15 google scholar
  • Niciforovic N., Abramovic H., 2014, CRFSFS, 13, 34 google scholar
  • pkCSM: predicting small-molecule pharmacokinetic properties using graph-based signatures. Available online: URL (accessed on 10 September 2023) google scholar
  • Pires D. E., Blundell T. L., Ascher D. B., 2015, J. Med. Chem., 58, 4066 google scholar
  • Roychoudhury S. et al., 2021, Antioxidants, 10, 1205 google scholar
  • Saraç K., 2018, Bitlis Eren Üniversitesi Fen Bilimleri Dergisi, 7, 311 google scholar
  • Sreejith S., Mohan N., Kurup M. P., 2017, Polyhedron, 135, 278 google scholar
  • Trott O., Olson A. J., 2010, J. Comput. Chem., 31, 455 google scholar
  • Tsao R., Deng Z., 2004, J. Chromatogr. B., 812, 85 google scholar
  • Zdunska K., Dana A., Kolodziejczak A., Rotsztejn H., 2018, Skin Pharmacol Physiol., 31, 332 google scholar
  • Zhang G., Zhou Z., Xu J., Liao Y., Hu X., 2019, J. Biomol. Struct. Dyn., 38, 1 google scholar
There are 23 citations in total.

Details

Primary Language English
Subjects General Physics
Journal Section Research Articles
Authors

Bilge Bıçak 0000-0003-1147-006X

Serda Kecel Gündüz This is me 0000-0003-0973-8223

Publication Date December 21, 2023
Submission Date September 14, 2023
Published in Issue Year 2023 Volume: 1 Issue: 2

Cite

APA Bıçak, B., & Kecel Gündüz, S. (2023). A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids. Physics and Astronomy Reports, 1(2), 74-84. https://doi.org/10.26650/PAR.2023.00009
AMA Bıçak B, Kecel Gündüz S. A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids. Physics and Astronomy Reports. December 2023;1(2):74-84. doi:10.26650/PAR.2023.00009
Chicago Bıçak, Bilge, and Serda Kecel Gündüz. “A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids”. Physics and Astronomy Reports 1, no. 2 (December 2023): 74-84. https://doi.org/10.26650/PAR.2023.00009.
EndNote Bıçak B, Kecel Gündüz S (December 1, 2023) A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids. Physics and Astronomy Reports 1 2 74–84.
IEEE B. Bıçak and S. Kecel Gündüz, “A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids”, Physics and Astronomy Reports, vol. 1, no. 2, pp. 74–84, 2023, doi: 10.26650/PAR.2023.00009.
ISNAD Bıçak, Bilge - Kecel Gündüz, Serda. “A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids”. Physics and Astronomy Reports 1/2 (December 2023), 74-84. https://doi.org/10.26650/PAR.2023.00009.
JAMA Bıçak B, Kecel Gündüz S. A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids. Physics and Astronomy Reports. 2023;1:74–84.
MLA Bıçak, Bilge and Serda Kecel Gündüz. “A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids”. Physics and Astronomy Reports, vol. 1, no. 2, 2023, pp. 74-84, doi:10.26650/PAR.2023.00009.
Vancouver Bıçak B, Kecel Gündüz S. A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids. Physics and Astronomy Reports. 2023;1(2):74-8.