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Novel Chaphamaparvovirus in a Paradise Tanager Songbird with Encephalitis, Neuritis, and Ventriculitis

Year 2021, Volume: 16 Issue: 1, 25 - 31, 26.04.2021

Abstract

Parvoviridae family being an extremely fast-growing family and is open to novel viral discoveries. Many new parvoviruses from different vertebrates and invertebrates hosts have been discovered in recent years. The taxonomy has changed with new classification by the International Committee on Taxonomy of Viruses. The subfamily Hamaparvovirinae has been added to the prior subfamilies that consisted of Parvovirinae and Densovirinae. Chaphamaparvovirus is a recently identified genus of Hamaparvovirinae, including some members associated with nephropathy in laboratory mice and high mortality in Tilapia fish. Samples from a deceased Northern paradise tanager (Tangara chilensis paradisea) with nonsuppurative encephalitis, neuritis, and ventriculitis were examined by light microscopy and ancillary histochemical stains for bacteria, protozoa, fungi, and other parasites. Samples were also analyzed by PCR for general protozoa, paramyxovirus, avian bornavirus, and herpesvirus. None of these known pathogens were detected. Using viral metagenomics we identified and characterized the genome of a novel chaphamaparvovirus in tissues of this bird. No other viral sequences were identified. This virus’s contributory role to these lesions will require further studies.

Supporting Institution

Vitalant Research Institute and San Diego Zoo Global

References

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  • 11. Reuter G., Boros A., Delwart E., Pankovics P., 2014. Novel circular single-stranded DNA virus from turkey faeces. Arch Virol, 159, 2161-2164.
  • 12. Kapusinszky B., Ardeshir A., Mulvaney U., Deng X., Delwart E., 2017. Case-control comparison of enteric viromes in Captive Rhesus Macaques with acute or idiopathic chronic diarrhea. J Virol, 91. e00952-17. 1-19.
  • 13. Sawaswong V., Fahsbender E., Altan E., Kemthong T., Deng X., Malaivijitnond S., Payungporn S., Delwart E., 2019. High diversity and novel enteric viruses in fecal viromes of healthy wild and captive Thai Cynomolgus Macaques (Macaca fascicularis). Viruses, 11, 1-19.
  • 14. Baker KS., Leggett RM., Bexfield NH., Alston M., Daly G., Todd S., Tachedjian M., Holmes CE., Crameri S., Wang LF., Heeney JL., Suu-Ire R., Kellam P., Cunningham AA., Wood JLN.,Caccamo M., Murcia PR., 2013. Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus. Virology, 441, 95-106.
  • 15. Yinda CK., Ghogomu SM., Conceicao-Neto N., Beller L., Deboutte W., Vanhulle E., Maes P., Van Ranst M., Matthijnssens J., 2018. Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. Virus Evol, 4, vey008.1-15.
  • 16. Chong R., Shi M., Grueber CE., Holmes EC., Hogg CJ., Belov K., Barrs VR., 2019. Fecal viral diversity of captive and wild Tasmanian Devils characterized using virion-enriched metagenomics and metatranscriptomics. J Virol, 93. e00205-19.1-18.
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  • 18. Fahsbender E., Charlys da-Costa A., Elise Gill D., Augusto de Padua Milagres F., Brustulin R., Julio Costa Monteiro F., Octavio da Silva Rego M., Soares D'Athaide Ribeiro E., Cerdeira Sabino E., Delwart E., 2020. Plasma virome of 781 Brazilians with unexplained symptoms of arbovirus infection include a novel parvovirus and densovirus. PLoS One 15, e0229993.
  • 19. Li Y., Gordon E., Idle A., Altan E., Seguin MA., Estrada M., Deng X., Delwart E., 2020. Virome of a feline outbreak of diarrhea and vomiting includes Bocaviruses and a Novel Chapparvovirus. Viruses, 12, 1-15.
  • 20. Delnatte P., Ojkic D., Delay J., Campbell D., Crawshaw G., Smith DA., 2013. Pathology and diagnosis of avian bornavirus infection in wild Canada geese (Branta canadensis), trumpeter swans (Cygnus buccinator) and mute swans (Cygnus olor) in Canada: a retrospective study. Avian Pathol, 42, 114-128.
  • 21. Shanan S., Abd H., Bayoumi M., Saeed A., Sandstrom G., 2015. Prevalence of protozoa species in drinking and environmental water sources in Sudan. Biomed Res Int, 2015, 345619.
  • 22. Tong S., Chern SW., Li Y., Pallansch MA., Anderson LJ., 2008. Sensitive and broadly reactive reverse transcription-PCR assays to detect novel paramyxoviruses. J Clin Microbiol, 46, 2652-2658.
  • 23. VanDevanter DR., Warrener P., Bennett L., Schultz ER., Coulter S., Garber RL., Rose TM., 1996. Detection and analysis of diverse herpesviral species by consensus primer PCR. J Clin Microbiol, 34, 1666-1671.
  • 24. Li L., Deng X., Mee ET., Collot-Teixeira S., Anderson R., Schepelmann S., Minor PD., Delwart, E., 2015. Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent. J Virol Methods, 213, 139-146.
  • 25. Altan E., Li Y., Sabino-Santos G., Jr. Sawaswong V., Barnum S., Pusterla N., Deng X., Delwart E., 2019. Viruses in Horses with Neurologic and Respiratory Diseases. Viruses, 11, 1-12.
  • 26. Deng X., Naccache SN., Ng T., Federman S., Li L., Chiu CY., Delwart E., 2015. An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res, 43,7, 20,e46.
  • 27. Le SQ., Gascuel O., 2008. An improved general amino acid replacement matrix. Mol Biol Evol, 25, 1307-1320.
  • 28. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S., 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol, 30, 2725-2729.
  • 29. Zadori Z., Szelei J., Lacoste MC., Li Y., Gariepy S., Raymond P., Allaire M., Nabi IR., Tijssen P., 2001. A viral phospholipase A2 is required for parvovirus infectivity. Dev Cell, 1, 291-302.
  • 30. Lopez-Bueno A., Mateu MG., Almendral JM., 2003. High mutant frequency in populations of a DNA virus allows evasion from antibody therapy in an immunodeficient host. J Virol, 77, 2701-2708.
  • 31. Kim HR., Kwon YK., Jang I., Bae YC., 2020. Viral metagenomic analysis of chickens with runting-stunting syndrome in the Republic of Korea. Virol J, 17, 53.
  • 32. Lee Q., Padula MP., Pinello N., Williams SH., O'Rourke MB., Fumagalli MJ., Orkin JD., Song R., Shaban B., Brenner O., Pimanda JE., Weninger W., Marciel de Souza W., Melin AD., Wong JJL., Crim MJ., Monette S., Roediger B., Jolly CJ., 2020. Murine and related chapparvoviruses are nephro-tropic and produce novel accessory proteins in infected kidneys. PLoS Pathog, 16, e1008262.
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  • 34. Liu W., Zhang Y., Ma J., Jiang N., Fan Y., Zhou Y., Cain K., Yi M., Jia K., Wen H., Liu W., Guan W., Zeng L., 2020. Determination of a novel parvovirus pathogen associated with massive mortality in adult tilapia. PLoS Pathog, 16, e1008765.
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  • 36. Hu W., Liu Q., Chen Q., Ji J., 2020. Molecular characterization of Cachavirus firstly detected in dogs in China. Infect Genet Evol, 85, 104529.

Ensefalit, Neurit ve Ventrikülit’li Paradise Tanager Ötücü Kuşunda Yeni Chaphamaparvovirus

Year 2021, Volume: 16 Issue: 1, 25 - 31, 26.04.2021

Abstract

Parvoviridae ailesi son derece hızlı büyüyen bir ailedir ve yeni virus keşiflerine açıktır. Son yıllarda bu aileye ait farklı omurgalılardan ve omurgasızlardan birçok yeni virus keşfedilmiştir. Yapılan yeni keşiflerle Uluslararası Virus Taksonomisi Komitesi tarafından taksonomi değiştirilmiştir. Daha önce Parvovirinae ve Densovirinae olan alt ailelere Hamaparvovirinae alt ailesi eklenmiştir. Chaphamaparvovirus, yakın zamanda tanımlanan bir parvovirus genusudur (Parvoviridae ailesi) bazı alt türleri laboratuvar farelerinde nefropati ile ilişkili ve Tilapya balıklarında yüksek ölüm oranı göstermektedir. Ensefalit, nörit ve ventrikülitli bulguları ile ölen bir Cennet Tangarası (Tangara chilensis paradisea) kuşundan alınan numuneler, ışık mikroskobu ve bakteriyolojik, protozoer, mantar, ve diğer paraziter etkenler yönünden histokimyasal olarak incelendi. Örnekler ayrıca genel protozoa, paramiksovirus, avian bornavirus ve herpesvirus için PCR ile analiz yapıldı ve bulaşıcı ajan tespit edilmedi. Yeni nesil sekanslama methodu ile viral metagenomik kullanarak, bu kuşun dokularındaki yeni bir chaphamaparvovirus genomunu karakterize edildi Herhangi başka hiçbir viral sekans (etken) tanımlanmadı. Bu çalışma yeni bir virus keşif yayını olup bu virusun bu lezyonlara katkıda bulunan rolünün doğrulanması için öncü nitelikte olacaktır.

References

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  • 2. Aydin H., Timurkan MO., Aktas O., 2019. Genetic diversity of primate erythroparvovirus 1 between 2009 and 2016: First report from Turkey. Microb pathog, 131-135.
  • 3. Penzes JJ., Soderlund-Venermo M., Canuti M., Eis-Hubinger AM., Hughes J., Cotmore SF., Harrach B., 2020. Reorganizing the family Parvoviridae: a revised taxonomy independent of the canonical approach based on host association. Arch Virol, 165, 2133-2146.
  • 4. Fahsbender E., Altan E., Seguin MA., Young P., Estrada M., Leutenegger C., Delwart E., 2019. Chapparvovirus DNA Found in 4% of Dogs with Diarrhea. Viruses, 11,398.
  • 5. Dinçer E., Timurkan MÖ., Polat Dinçer FP., Aydın H., 2020. Co-circulation of canine chaphamaparvovirus and canine parvovirus 2 in dogs with diarrhea in Turkey. Thai J Vet Med. 50, 495-501.
  • 6. Palinski RM., Mitra N., Hause BM., 2016. Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs. Virus Genes, 52, 564-567.
  • 7. Williams SH., Che X., Garcia JA., Klena JD., Lee B., Muller D., Ulrich W., Corrigan RM., Nichol S., Jain K., Lipkin WI., 2018. Viral Diversity of House Mice in New York City. mBio 9. e01354-17.
  • 8. Yang S., Liu Z., Wang Y., Li W., Fu X., Lin Y., Shen Q., Wang X., Wang H., Zhang, W., 2016. A novel rodent Chapparvovirus in feces of wild rats. Virol J, 13, 133.
  • 9. Wang Y., Yang S., Liu D., Zhou C., Li W., Lin Y., Wang X., Shen Q., Wang H., Li C., Zong M., Ding Y., Song Q., Deng X., Qi D., Zhang W., Delwart E., 2019. The fecal virome of red-crowned cranes. Arch Virol, 164, 3-16.
  • 10. Lima DA., Cibulski SP., Tochetto C., Varela APM., Finkler F., Teixeira TF., Loiko MR., Cerva C., Junqueira DM., Mayer FQ., Roehe PM., 2019. The intestinal virome of malabsorption syndrome-affected and unaffected broilers through shotgun metagenomics. Virus Res, 261, 9-20.
  • 11. Reuter G., Boros A., Delwart E., Pankovics P., 2014. Novel circular single-stranded DNA virus from turkey faeces. Arch Virol, 159, 2161-2164.
  • 12. Kapusinszky B., Ardeshir A., Mulvaney U., Deng X., Delwart E., 2017. Case-control comparison of enteric viromes in Captive Rhesus Macaques with acute or idiopathic chronic diarrhea. J Virol, 91. e00952-17. 1-19.
  • 13. Sawaswong V., Fahsbender E., Altan E., Kemthong T., Deng X., Malaivijitnond S., Payungporn S., Delwart E., 2019. High diversity and novel enteric viruses in fecal viromes of healthy wild and captive Thai Cynomolgus Macaques (Macaca fascicularis). Viruses, 11, 1-19.
  • 14. Baker KS., Leggett RM., Bexfield NH., Alston M., Daly G., Todd S., Tachedjian M., Holmes CE., Crameri S., Wang LF., Heeney JL., Suu-Ire R., Kellam P., Cunningham AA., Wood JLN.,Caccamo M., Murcia PR., 2013. Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus. Virology, 441, 95-106.
  • 15. Yinda CK., Ghogomu SM., Conceicao-Neto N., Beller L., Deboutte W., Vanhulle E., Maes P., Van Ranst M., Matthijnssens J., 2018. Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. Virus Evol, 4, vey008.1-15.
  • 16. Chong R., Shi M., Grueber CE., Holmes EC., Hogg CJ., Belov K., Barrs VR., 2019. Fecal viral diversity of captive and wild Tasmanian Devils characterized using virion-enriched metagenomics and metatranscriptomics. J Virol, 93. e00205-19.1-18.
  • 17. Du J., Wang W., Chan JF., Wang G., Huang Y., Yi Y., Zhu Z., Peng R., Hu X., Wu Y., Zeng J., Zheng J., Cui X., Niu L., Zhao W., Lu G., Yuen KY., Yin F., 2019. Identification of a novel ichthyic parvovirus in Marine Species in Hainan Island, China. Front Microbiol, 10, 2815.
  • 18. Fahsbender E., Charlys da-Costa A., Elise Gill D., Augusto de Padua Milagres F., Brustulin R., Julio Costa Monteiro F., Octavio da Silva Rego M., Soares D'Athaide Ribeiro E., Cerdeira Sabino E., Delwart E., 2020. Plasma virome of 781 Brazilians with unexplained symptoms of arbovirus infection include a novel parvovirus and densovirus. PLoS One 15, e0229993.
  • 19. Li Y., Gordon E., Idle A., Altan E., Seguin MA., Estrada M., Deng X., Delwart E., 2020. Virome of a feline outbreak of diarrhea and vomiting includes Bocaviruses and a Novel Chapparvovirus. Viruses, 12, 1-15.
  • 20. Delnatte P., Ojkic D., Delay J., Campbell D., Crawshaw G., Smith DA., 2013. Pathology and diagnosis of avian bornavirus infection in wild Canada geese (Branta canadensis), trumpeter swans (Cygnus buccinator) and mute swans (Cygnus olor) in Canada: a retrospective study. Avian Pathol, 42, 114-128.
  • 21. Shanan S., Abd H., Bayoumi M., Saeed A., Sandstrom G., 2015. Prevalence of protozoa species in drinking and environmental water sources in Sudan. Biomed Res Int, 2015, 345619.
  • 22. Tong S., Chern SW., Li Y., Pallansch MA., Anderson LJ., 2008. Sensitive and broadly reactive reverse transcription-PCR assays to detect novel paramyxoviruses. J Clin Microbiol, 46, 2652-2658.
  • 23. VanDevanter DR., Warrener P., Bennett L., Schultz ER., Coulter S., Garber RL., Rose TM., 1996. Detection and analysis of diverse herpesviral species by consensus primer PCR. J Clin Microbiol, 34, 1666-1671.
  • 24. Li L., Deng X., Mee ET., Collot-Teixeira S., Anderson R., Schepelmann S., Minor PD., Delwart, E., 2015. Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent. J Virol Methods, 213, 139-146.
  • 25. Altan E., Li Y., Sabino-Santos G., Jr. Sawaswong V., Barnum S., Pusterla N., Deng X., Delwart E., 2019. Viruses in Horses with Neurologic and Respiratory Diseases. Viruses, 11, 1-12.
  • 26. Deng X., Naccache SN., Ng T., Federman S., Li L., Chiu CY., Delwart E., 2015. An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res, 43,7, 20,e46.
  • 27. Le SQ., Gascuel O., 2008. An improved general amino acid replacement matrix. Mol Biol Evol, 25, 1307-1320.
  • 28. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S., 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol, 30, 2725-2729.
  • 29. Zadori Z., Szelei J., Lacoste MC., Li Y., Gariepy S., Raymond P., Allaire M., Nabi IR., Tijssen P., 2001. A viral phospholipase A2 is required for parvovirus infectivity. Dev Cell, 1, 291-302.
  • 30. Lopez-Bueno A., Mateu MG., Almendral JM., 2003. High mutant frequency in populations of a DNA virus allows evasion from antibody therapy in an immunodeficient host. J Virol, 77, 2701-2708.
  • 31. Kim HR., Kwon YK., Jang I., Bae YC., 2020. Viral metagenomic analysis of chickens with runting-stunting syndrome in the Republic of Korea. Virol J, 17, 53.
  • 32. Lee Q., Padula MP., Pinello N., Williams SH., O'Rourke MB., Fumagalli MJ., Orkin JD., Song R., Shaban B., Brenner O., Pimanda JE., Weninger W., Marciel de Souza W., Melin AD., Wong JJL., Crim MJ., Monette S., Roediger B., Jolly CJ., 2020. Murine and related chapparvoviruses are nephro-tropic and produce novel accessory proteins in infected kidneys. PLoS Pathog, 16, e1008262.
  • 33. Penzes JJ., Soderlund-Venermo M., Canuti M., Eis-Hubinger AM., Hughes J., Cotmore SF., Harrach B., 2020. Reorganizing the family Parvoviridae: a revised taxonomy independent of the canonical approach based on host association. Arch Virol, 165(9):2133-2146.
  • 34. Liu W., Zhang Y., Ma J., Jiang N., Fan Y., Zhou Y., Cain K., Yi M., Jia K., Wen H., Liu W., Guan W., Zeng L., 2020. Determination of a novel parvovirus pathogen associated with massive mortality in adult tilapia. PLoS Pathog, 16, e1008765.
  • 35. Roediger B., Lee Q., Tikoo S., Cobbin JCA., Henderson JM., Jormakka M., O'Rourke MB., Padula MP., Pinello N., Henry M., Wynne M., Santagostino SF., Brayton CF., Rasmussen L., Lisowski L., Tay SS., Harris DC., Bertram JF., Dowling JP., Bertolino P., Lai JH., Wu W., Bachovchin WW., Wong JJ., Gorrell MD., Shaban B., Holmes EC., Jolly CJ., Monette S., Weninger W., 2018. An atypical Parvovirus drives chronic tubulointerstitial nephropathy and kidney fibrosis. Cell, 175, 530-543 e524.
  • 36. Hu W., Liu Q., Chen Q., Ji J., 2020. Molecular characterization of Cachavirus firstly detected in dogs in China. Infect Genet Evol, 85, 104529.
There are 36 citations in total.

Details

Primary Language English
Subjects Health Care Administration
Journal Section Araştırma Makaleleri
Authors

Eda Altan 0000-0001-7903-6986

Steven Kubiski This is me 0000-0002-6344-7841

Ilse Stalis This is me 0000-0002-9957-7154

Yanpeng Li This is me 0000-0002-0643-4809

Xutao Deng This is me 0000-0001-6619-9989

Eric Delwart This is me 0000-0002-6296-4484

Publication Date April 26, 2021
Published in Issue Year 2021 Volume: 16 Issue: 1

Cite

APA Altan, E., Kubiski, S., Stalis, I., Li, Y., et al. (2021). Novel Chaphamaparvovirus in a Paradise Tanager Songbird with Encephalitis, Neuritis, and Ventriculitis. Atatürk Üniversitesi Veteriner Bilimleri Dergisi, 16(1), 25-31.
AMA Altan E, Kubiski S, Stalis I, Li Y, Deng X, Delwart E. Novel Chaphamaparvovirus in a Paradise Tanager Songbird with Encephalitis, Neuritis, and Ventriculitis. Atatürk Üniversitesi Veteriner Bilimleri Dergisi. April 2021;16(1):25-31.
Chicago Altan, Eda, Steven Kubiski, Ilse Stalis, Yanpeng Li, Xutao Deng, and Eric Delwart. “Novel Chaphamaparvovirus in a Paradise Tanager Songbird With Encephalitis, Neuritis, and Ventriculitis”. Atatürk Üniversitesi Veteriner Bilimleri Dergisi 16, no. 1 (April 2021): 25-31.
EndNote Altan E, Kubiski S, Stalis I, Li Y, Deng X, Delwart E (April 1, 2021) Novel Chaphamaparvovirus in a Paradise Tanager Songbird with Encephalitis, Neuritis, and Ventriculitis. Atatürk Üniversitesi Veteriner Bilimleri Dergisi 16 1 25–31.
IEEE E. Altan, S. Kubiski, I. Stalis, Y. Li, X. Deng, and E. Delwart, “Novel Chaphamaparvovirus in a Paradise Tanager Songbird with Encephalitis, Neuritis, and Ventriculitis”, Atatürk Üniversitesi Veteriner Bilimleri Dergisi, vol. 16, no. 1, pp. 25–31, 2021.
ISNAD Altan, Eda et al. “Novel Chaphamaparvovirus in a Paradise Tanager Songbird With Encephalitis, Neuritis, and Ventriculitis”. Atatürk Üniversitesi Veteriner Bilimleri Dergisi 16/1 (April 2021), 25-31.
JAMA Altan E, Kubiski S, Stalis I, Li Y, Deng X, Delwart E. Novel Chaphamaparvovirus in a Paradise Tanager Songbird with Encephalitis, Neuritis, and Ventriculitis. Atatürk Üniversitesi Veteriner Bilimleri Dergisi. 2021;16:25–31.
MLA Altan, Eda et al. “Novel Chaphamaparvovirus in a Paradise Tanager Songbird With Encephalitis, Neuritis, and Ventriculitis”. Atatürk Üniversitesi Veteriner Bilimleri Dergisi, vol. 16, no. 1, 2021, pp. 25-31.
Vancouver Altan E, Kubiski S, Stalis I, Li Y, Deng X, Delwart E. Novel Chaphamaparvovirus in a Paradise Tanager Songbird with Encephalitis, Neuritis, and Ventriculitis. Atatürk Üniversitesi Veteriner Bilimleri Dergisi. 2021;16(1):25-31.