Research Article

Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience

Volume: 75 Number: 3 October 18, 2022
Şule Altıner *, Alper Han Çebi , Said Çelik , Mehmet Gökcü
EN TR

Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience

Abstract

Objectives: To discuss the genotype/phenotype correlation of eight cases with pathogenic variant in the PTPN11 gene. Materials and Methods: Eight cases with a prediagnosis of Noonan Syndrome, in which the PTPN11 gene sequence analysis was performed between 2017 and 2019 at Karadeniz Technical University Faculty of Medicine and Trabzon Kanuni Training and Research Hospital, Department of Medical Genetics were retrospectively evaluated in the study. Results: The most common findings in the eight cases with pathogenic variant in the PTPN11 gene were heart defect (87.5%), short stature (87.5%), and low-set posteriorly rotated ears (87.5%) and the most common heart defect was pulmonary stenosis (62.5%). The clinical diagnoses of those cases were Noonan Syndrome (87.5%) and Noonan syndrome with multiple lentigines (12.5%). NM_002834.5: PTPN11; c.922A>G; p.Asn308Asp mutation was the most commonly (25%) detected mutation. Conclusion: The phenotypes caused by all disease-causing variants found in this study were detected to be compatible with the current knowledge. Pathogenic variants of PTPN11 are responsible for 50% of RASopathies, and PTPN11 sequence analysis is a cost-effective method in patients with normal karyotyping, meeting the scoring system for Noonan Syndrome with clinical findings

Keywords

Noonan Syndrome, PTPN11, Noonan Syndrome with Multiple Lentigines, Genotype/Phenotype Correlation

References

  1. 1. Rauen KA. The RASopathies. Annu Rev Genomics Hum Genet. 2013;14:355-369.
  2. 2. Riller Q, Rieux-Laucat F. RASopathies: From germline mutations to somatic and multigenic diseases. Biomed J. 2021;44:422-432.
  3. 3. Jongmans M, Otten B, Noordam K, et al. Genetics and variation in phenotype in Noonan syndrome. Horm Res. 2004;62 Suppl 3:56-9.
  4. 4. van der Burgt I. Noonan syndrome. Orphanet J Rare Dis. 2007;2:4.
  5. 5. Stenson PD, Mort M, Ball EV, et al. The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine. Hum Genet. 2014;133:1-9.
  6. 6. Landrum MJ, Lee JM, Benson M, et al. ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acids Res. 2018;46:D1062-D1067.
  7. 7. Firth HV, Richards SM, Bevan AP, et al. DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources. Am J Hum Genet. 2009;84:524-533.
  8. 8. Adzhubei I, Jordan DM, Sunyaev SR. Predicting functional effect of human missense mutations using PolyPhen-2. Curr Protoc Hum Genet. 2013;Chapter 7:Unit7.20.
  9. 9. Kumar P, Henikoff S, Ng PC. Predicting the effects of coding nonsynonymous variants on protein function using the SIFT algorithm. Nat Protoc. 2009;4:1073-1081.
  10. 10. Schwarz JM, Cooper DN, Schuelke M, et al. MutationTaster2: mutation prediction for the deep-sequencing age. Nat Methods. 2014;11:361-362.
APA
Altıner, Ş., Çebi, A. H., Çelik, S., & Gökcü, M. (2022). Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience. Ankara Üniversitesi Tıp Fakültesi Mecmuası, 75(3), 368-372. https://doi.org/10.4274/atfm.galenos.2022.06978
AMA
1.Altıner Ş, Çebi AH, Çelik S, Gökcü M. Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience. Ankara Üniversitesi Tıp Fakültesi Mecmuası. 2022;75(3):368-372. doi:10.4274/atfm.galenos.2022.06978
Chicago
Altıner, Şule, Alper Han Çebi, Said Çelik, and Mehmet Gökcü. 2022. “Genotype/Phenotype/Correlation/of/Cases/With/PTPN11/Gene/Mutation:/Eastern/Black/Sea/Experience”. Ankara Üniversitesi Tıp Fakültesi Mecmuası 75 (3): 368-72. https://doi.org/10.4274/atfm.galenos.2022.06978.
EndNote
Altıner Ş, Çebi AH, Çelik S, Gökcü M (October 1, 2022) Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience. Ankara Üniversitesi Tıp Fakültesi Mecmuası 75 3 368–372.
IEEE
[1]Ş. Altıner, A. H. Çebi, S. Çelik, and M. Gökcü, “Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience”, Ankara Üniversitesi Tıp Fakültesi Mecmuası, vol. 75, no. 3, pp. 368–372, Oct. 2022, doi: 10.4274/atfm.galenos.2022.06978.
ISNAD
Altıner, Şule - Çebi, Alper Han - Çelik, Said - Gökcü, Mehmet. “Genotype/Phenotype/Correlation/of/Cases/With/PTPN11/Gene/Mutation:/Eastern/Black/Sea/Experience”. Ankara Üniversitesi Tıp Fakültesi Mecmuası 75/3 (October 1, 2022): 368-372. https://doi.org/10.4274/atfm.galenos.2022.06978.
JAMA
1.Altıner Ş, Çebi AH, Çelik S, Gökcü M. Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience. Ankara Üniversitesi Tıp Fakültesi Mecmuası. 2022;75:368–372.
MLA
Altıner, Şule, et al. “Genotype/Phenotype/Correlation/of/Cases/With/PTPN11/Gene/Mutation:/Eastern/Black/Sea/Experience”. Ankara Üniversitesi Tıp Fakültesi Mecmuası, vol. 75, no. 3, Oct. 2022, pp. 368-72, doi:10.4274/atfm.galenos.2022.06978.
Vancouver
1.Şule Altıner, Alper Han Çebi, Said Çelik, Mehmet Gökcü. Genotype/Phenotype Correlation of Cases with PTPN11 Gene Mutation: Eastern Black Sea Experience. Ankara Üniversitesi Tıp Fakültesi Mecmuası. 2022 Oct. 1;75(3):368-72. doi:10.4274/atfm.galenos.2022.06978