Research Article
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Year 2025, Volume: 15 Issue: 2, 148 - 170, 31.12.2025
https://doi.org/10.17678/beuscitech.1725713

Abstract

Project Number

BEBAP2023.22.

References

  • P. S. Masters and S. Perlman, "Coronaviridae," in Fields Virology, 6th ed., D. M. Knipe and P. M. Howley, Eds. Philadelphia, PA, USA: Lippincott Williams & Wilkins, 2013, pp. 825–858.
  • A. Güner and S. Aslan, Eds., Türkiye Bitkileri Listesi: (Damarlı Bitkiler). Istanbul, Turkey: Nezahat Gökyiğit Botanik Bahçesi Yayınları, 2012.
  • N. Aligiannis et al., "Methanolic extract of Verbascum macrurum as a source of natural preservatives against oxidative rancidity," J. Agric. Food Chem., vol. 51, no. 25, pp. 7308–7312, 2003.
  • F. Çayan, E. Deveci, G. Tel-Çayan, and M. E. Duru, "Identification and quantification of phenolic acid compounds of twenty-six mushrooms by HPLC–DAD," J. Food Meas. Charact., vol. 14, pp. 1690–1698, 2020.
  • A. Daina, O. Michielin, and V. Zoete, "SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules," Sci. Rep., vol. 7, no. 1, Art. no. 42717, 2017.
  • Z. Yang et al., "Exploring new catechin derivatives as SARS-CoV-2 Mpro inhibitors from tea by molecular networking, surface plasma resonance, enzyme inhibition, induced fit docking, and metadynamics simulations," Comput. Biol. Med., vol. 151, Pt. A, Art. no. 106288, 2022.
  • O. Akinyemi, S. O. Oyewole, and K. A. Jimoh, "Medicinal plants and sustainable human health: a review," Hortic. Int. J., vol. 2, no. 4, pp. 194–195, 2018.
  • T. Sen and S. K. Samanta, "Medicinal plants, human health and biodiversity: a broad review," in Biotechnological Applications of Biodiversity, J. Mukherjee et al., Eds. Berlin, Germany: Springer, 2015, pp. 59–110.
  • T. Moses and A. Goossens, "Plants for human health: greening biotechnology and synthetic biology," J. Exp. Bot., vol. 68, no. 15, pp. 4009–4011, 2017.
  • H. Zhang, "Plant natural products for human health," Int. J. Mol. Sci., vol. 20, no. 4, Art. no. 830, 2019.
  • K. I. Alipieva, I. E. Orhan, I. I. T. Cankaya, E. P. Kostadinova, and M. I. Georgiev, "Treasure from garden: chemical profiling, pharmacology and biotechnology of mulleins," Phytochem. Rev., vol. 13, pp. 417–444, 2014.
  • İ. Tatlı, W. Schühly, W. Kunert, E. Bedir, and Z. S. Akdemir, "Secondary metabolites from the aerial parts of Verbascum dudleyanum and their biological activities," Chem. Nat. Compd., vol. 44, pp. 292–295, 2008.
  • M. H. I. Amin et al., "Phytochemistry of Verbascum species growing in Iraqi Kurdistan and bioactive iridoids from the flowers of Verbascum calvum," Plants, vol. 9, no. 9, Art. no. 1066, 2020.
  • D. F. Veber et al., "Molecular properties that influence the oral bioavailability of drug candidates," J. Med. Chem., vol. 45, no. 12, pp. 2615–2623, 2002.
  • A. K. Ghose, V. N. Viswanadhan, and J. J. Wendoloski, "A knowledge-based approach in designing combinatorial or medicinal chemistry libraries for drug discovery. 1. A qualitative and quantitative characterization of known drug databases," J. Comb. Chem., vol. 1, no. 1, pp. 55–68, 1999.
  • I. Muegge, S. L. Heald, and D. Brittelli, "Simple selection criteria for drug-like chemical matter," J. Med. Chem., vol. 44, no. 12, pp. 1841–1846, 2001.
  • J. B. Baell and G. A. Holloway, "New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays," J. Med. Chem., vol. 53, no. 7, pp. 2719–2740, 2010.
  • R. Brenk et al., "Lessons learnt from assembling screening libraries for drug discovery for neglected diseases," ChemMedChem, vol. 3, no. 3, pp. 435–444, 2008.
  • S. J. Teague, A. M. Davis, P. D. Leeson, and T. Oprea, "The design of leadlike combinatorial libraries," Angew. Chem. Int. Ed., vol. 38, no. 24, pp. 3743–3748, 1999.
  • S. Li, H. He, L. J. Parthiban, H. Yin, and A. T. Serajuddin, "IV-IVC considerations in the development of immediate-release oral dosage form," J. Pharm. Sci., vol. 94, no. 7, pp. 1396–1417, 2005.
  • P. K. Pandey, A. K. Sharma, and U. Gupta, "Blood brain barrier: An overview on strategies in drug delivery, realistic in vitro modeling and in vivo live tracking," Tissue Barriers, vol. 4, no. 1, Art. no. e1129476, 2015.
  • F. S. Youssef, A. E. Altyar, A. M. Omar, and M. L. Ashour, "Phytoconstituents, in vitro anti-infective activity of Buddleja indica Lam., and in silico evaluation of its SARS-CoV-2 inhibitory potential," Front. Pharmacol., vol. 12, Art. no. 619373, 2021.
  • G. Derosa, P. Maffioli, A. D'Angelo, and F. Di Pierro, "A role for quercetin in coronavirus disease 2019 (COVID‐19)," Phytother. Res., vol. 35, no. 3, pp. 1230–1236, 2021.
  • A. Basu, A. Sarkar, and U. Maulik, "Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2," Sci. Rep., vol. 10, no. 1, Art. no. 17699, 2020.
  • G. Delikanlı Akbay, "Oleuropein ve Kuersetinin COVID-19 Hastalığında Etkinliği," Cumhuriyet Üniv. Sağlık Bil. Enst. Derg., vol. 6, no. 3, pp. 239–248, 2021.
  • M. Pourhajibagher and A. Bahador, "Molecular docking study of potential antimicrobial photodynamic therapy as a potent inhibitor of SARS-CoV-2 main protease: An in silico insight," Infect. Disord. Drug Targets, vol. 23, no. 2, Art. no. e010922208438, 2023.
  • Z. Xiao, Q. Ye, X. Duan, and T. Xiang, "Network pharmacology reveals that resveratrol can alleviate COVID-19-related hyperinflammation," Dis. Markers, vol. 2021, Art. no. 4129993, 2021.
  • M. R. McCreary, P. M. Schnell, and D. A. Rhoda, "Randomized double-blind placebo-controlled proof-of-concept trial of resveratrol for outpatient treatment of mild coronavirus disease (COVID-19)," Sci. Rep., vol. 12, no. 1, Art. no. 10978, 2022.
  • H. İ. Güler and Y. Kara, "Targeting CoV-2 Spike RBD: ACE-II complex with phenolic compounds from Cistus (Cistus L.) Bee Pollen for COVID-19 treatment by molecular docking study," J. Apither. Nat., vol. 3, no. 1, pp. 10–23, 2020.
  • H. İ. Güler et al., "Targeting CoV-2 spike RBD and ACE-2 interaction with flavonoids of Anatolian propolis by in silico and in vitro studies in terms of possible COVID-19 therapeutics," Turk. J. Biol., vol. 45, no. 7, pp. 530–548, 2021.
  • R. Orfali et al., "Sinapic acid suppresses SARS CoV-2 replication by targeting its envelope protein," Antibiotics, vol. 10, no. 4, Art. no. 420, 2021.
  • E. S. İstifli, A. Şıhoğlu Tepe, C. Sarıkürkcü, and B. Tepe, "Molecular interactions of some phenolics with 2019-nCoV and related pathway elements," Int. J. Second. Metab., vol. 8, no. 3, pp. 246–271, 2021.
  • Q. Dong et al., "Neuroprotective potentials of ferulic acid against intracerebral hemorrhage COVID-19 through using network pharmacology approach and molecular docking analysis," Curr. Res. Toxicol., vol. 5, Art. no. 100123, 2023.
  • S. Pasquereau et al., "Ferulic acid derivatives block coronaviruses HCoV-229E and SARS-CoV-2 replication in vitro," Sci. Rep., vol. 12, no. 1, Art. no. 20309, 2022.
  • E. Ohgitani et al., "Rapid inactivation in vitro of SARS-CoV-2 in saliva by black tea and green tea," Pathogens, vol. 10, no. 6, Art. no. 721, 2021.
  • L. R. L. Diniz et al., "Catechins: therapeutic perspectives in COVID-19-associated acute kidney injury," Molecules, vol. 26, no. 19, Art. no. 5951, 2021.

Phytochemical Profiling and in Vitro Anti-Sars-Cov-2 Evaluation of Verbascum Zerdust: Integration of Ace2-Spike Inhibition Assay and Computational Approaches

Year 2025, Volume: 15 Issue: 2, 148 - 170, 31.12.2025
https://doi.org/10.17678/beuscitech.1725713

Abstract

Plants have long been used to protect and maintain human health. Due to the increasing costs and side effects of synthetic drugs, interest in herbal products is increasing day by day. For this reason, research continues in laboratories around the world to discover new drug active ingredients of natural origin. In the present study, the COVID-19 Spike ACE2 binding inhibition capacity of Verbascum zerdust Fırat was studied using commercial kits. In addition, the plant content was determined by HPLC-DAD analysis and the interaction of the components in the plant content with the 7U0N protein was determined by molecular docking analysis. In addition, the ADME profiles of the molecules detected in the plant content were determined using the SwissADME web tool. According to the results obtained, Verbascum zerdust showed the highest inhibition value at 0.001µl concentration (15.38%). In molecular docking analysis, catechin carbohydrate showed the highest binding affinity to the 7U0N complex (∆G= -8.3 kcal/mol). Among the molecules detected in the plant extract, catechin hydrate, resveretrol, quercetin and t-cinamic acid fully complied with the Lipinski, Ghose, Veber, Egan and Muegge criteria. In conclusion, the results obtained indicate that Verbascum zerdust plant can be used in the treatment of COVID-19.

Supporting Institution

Scientific Research Projects Coordination Unit of Bitlis Eren University

Project Number

BEBAP2023.22.

References

  • P. S. Masters and S. Perlman, "Coronaviridae," in Fields Virology, 6th ed., D. M. Knipe and P. M. Howley, Eds. Philadelphia, PA, USA: Lippincott Williams & Wilkins, 2013, pp. 825–858.
  • A. Güner and S. Aslan, Eds., Türkiye Bitkileri Listesi: (Damarlı Bitkiler). Istanbul, Turkey: Nezahat Gökyiğit Botanik Bahçesi Yayınları, 2012.
  • N. Aligiannis et al., "Methanolic extract of Verbascum macrurum as a source of natural preservatives against oxidative rancidity," J. Agric. Food Chem., vol. 51, no. 25, pp. 7308–7312, 2003.
  • F. Çayan, E. Deveci, G. Tel-Çayan, and M. E. Duru, "Identification and quantification of phenolic acid compounds of twenty-six mushrooms by HPLC–DAD," J. Food Meas. Charact., vol. 14, pp. 1690–1698, 2020.
  • A. Daina, O. Michielin, and V. Zoete, "SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules," Sci. Rep., vol. 7, no. 1, Art. no. 42717, 2017.
  • Z. Yang et al., "Exploring new catechin derivatives as SARS-CoV-2 Mpro inhibitors from tea by molecular networking, surface plasma resonance, enzyme inhibition, induced fit docking, and metadynamics simulations," Comput. Biol. Med., vol. 151, Pt. A, Art. no. 106288, 2022.
  • O. Akinyemi, S. O. Oyewole, and K. A. Jimoh, "Medicinal plants and sustainable human health: a review," Hortic. Int. J., vol. 2, no. 4, pp. 194–195, 2018.
  • T. Sen and S. K. Samanta, "Medicinal plants, human health and biodiversity: a broad review," in Biotechnological Applications of Biodiversity, J. Mukherjee et al., Eds. Berlin, Germany: Springer, 2015, pp. 59–110.
  • T. Moses and A. Goossens, "Plants for human health: greening biotechnology and synthetic biology," J. Exp. Bot., vol. 68, no. 15, pp. 4009–4011, 2017.
  • H. Zhang, "Plant natural products for human health," Int. J. Mol. Sci., vol. 20, no. 4, Art. no. 830, 2019.
  • K. I. Alipieva, I. E. Orhan, I. I. T. Cankaya, E. P. Kostadinova, and M. I. Georgiev, "Treasure from garden: chemical profiling, pharmacology and biotechnology of mulleins," Phytochem. Rev., vol. 13, pp. 417–444, 2014.
  • İ. Tatlı, W. Schühly, W. Kunert, E. Bedir, and Z. S. Akdemir, "Secondary metabolites from the aerial parts of Verbascum dudleyanum and their biological activities," Chem. Nat. Compd., vol. 44, pp. 292–295, 2008.
  • M. H. I. Amin et al., "Phytochemistry of Verbascum species growing in Iraqi Kurdistan and bioactive iridoids from the flowers of Verbascum calvum," Plants, vol. 9, no. 9, Art. no. 1066, 2020.
  • D. F. Veber et al., "Molecular properties that influence the oral bioavailability of drug candidates," J. Med. Chem., vol. 45, no. 12, pp. 2615–2623, 2002.
  • A. K. Ghose, V. N. Viswanadhan, and J. J. Wendoloski, "A knowledge-based approach in designing combinatorial or medicinal chemistry libraries for drug discovery. 1. A qualitative and quantitative characterization of known drug databases," J. Comb. Chem., vol. 1, no. 1, pp. 55–68, 1999.
  • I. Muegge, S. L. Heald, and D. Brittelli, "Simple selection criteria for drug-like chemical matter," J. Med. Chem., vol. 44, no. 12, pp. 1841–1846, 2001.
  • J. B. Baell and G. A. Holloway, "New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays," J. Med. Chem., vol. 53, no. 7, pp. 2719–2740, 2010.
  • R. Brenk et al., "Lessons learnt from assembling screening libraries for drug discovery for neglected diseases," ChemMedChem, vol. 3, no. 3, pp. 435–444, 2008.
  • S. J. Teague, A. M. Davis, P. D. Leeson, and T. Oprea, "The design of leadlike combinatorial libraries," Angew. Chem. Int. Ed., vol. 38, no. 24, pp. 3743–3748, 1999.
  • S. Li, H. He, L. J. Parthiban, H. Yin, and A. T. Serajuddin, "IV-IVC considerations in the development of immediate-release oral dosage form," J. Pharm. Sci., vol. 94, no. 7, pp. 1396–1417, 2005.
  • P. K. Pandey, A. K. Sharma, and U. Gupta, "Blood brain barrier: An overview on strategies in drug delivery, realistic in vitro modeling and in vivo live tracking," Tissue Barriers, vol. 4, no. 1, Art. no. e1129476, 2015.
  • F. S. Youssef, A. E. Altyar, A. M. Omar, and M. L. Ashour, "Phytoconstituents, in vitro anti-infective activity of Buddleja indica Lam., and in silico evaluation of its SARS-CoV-2 inhibitory potential," Front. Pharmacol., vol. 12, Art. no. 619373, 2021.
  • G. Derosa, P. Maffioli, A. D'Angelo, and F. Di Pierro, "A role for quercetin in coronavirus disease 2019 (COVID‐19)," Phytother. Res., vol. 35, no. 3, pp. 1230–1236, 2021.
  • A. Basu, A. Sarkar, and U. Maulik, "Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2," Sci. Rep., vol. 10, no. 1, Art. no. 17699, 2020.
  • G. Delikanlı Akbay, "Oleuropein ve Kuersetinin COVID-19 Hastalığında Etkinliği," Cumhuriyet Üniv. Sağlık Bil. Enst. Derg., vol. 6, no. 3, pp. 239–248, 2021.
  • M. Pourhajibagher and A. Bahador, "Molecular docking study of potential antimicrobial photodynamic therapy as a potent inhibitor of SARS-CoV-2 main protease: An in silico insight," Infect. Disord. Drug Targets, vol. 23, no. 2, Art. no. e010922208438, 2023.
  • Z. Xiao, Q. Ye, X. Duan, and T. Xiang, "Network pharmacology reveals that resveratrol can alleviate COVID-19-related hyperinflammation," Dis. Markers, vol. 2021, Art. no. 4129993, 2021.
  • M. R. McCreary, P. M. Schnell, and D. A. Rhoda, "Randomized double-blind placebo-controlled proof-of-concept trial of resveratrol for outpatient treatment of mild coronavirus disease (COVID-19)," Sci. Rep., vol. 12, no. 1, Art. no. 10978, 2022.
  • H. İ. Güler and Y. Kara, "Targeting CoV-2 Spike RBD: ACE-II complex with phenolic compounds from Cistus (Cistus L.) Bee Pollen for COVID-19 treatment by molecular docking study," J. Apither. Nat., vol. 3, no. 1, pp. 10–23, 2020.
  • H. İ. Güler et al., "Targeting CoV-2 spike RBD and ACE-2 interaction with flavonoids of Anatolian propolis by in silico and in vitro studies in terms of possible COVID-19 therapeutics," Turk. J. Biol., vol. 45, no. 7, pp. 530–548, 2021.
  • R. Orfali et al., "Sinapic acid suppresses SARS CoV-2 replication by targeting its envelope protein," Antibiotics, vol. 10, no. 4, Art. no. 420, 2021.
  • E. S. İstifli, A. Şıhoğlu Tepe, C. Sarıkürkcü, and B. Tepe, "Molecular interactions of some phenolics with 2019-nCoV and related pathway elements," Int. J. Second. Metab., vol. 8, no. 3, pp. 246–271, 2021.
  • Q. Dong et al., "Neuroprotective potentials of ferulic acid against intracerebral hemorrhage COVID-19 through using network pharmacology approach and molecular docking analysis," Curr. Res. Toxicol., vol. 5, Art. no. 100123, 2023.
  • S. Pasquereau et al., "Ferulic acid derivatives block coronaviruses HCoV-229E and SARS-CoV-2 replication in vitro," Sci. Rep., vol. 12, no. 1, Art. no. 20309, 2022.
  • E. Ohgitani et al., "Rapid inactivation in vitro of SARS-CoV-2 in saliva by black tea and green tea," Pathogens, vol. 10, no. 6, Art. no. 721, 2021.
  • L. R. L. Diniz et al., "Catechins: therapeutic perspectives in COVID-19-associated acute kidney injury," Molecules, vol. 26, no. 19, Art. no. 5951, 2021.
There are 36 citations in total.

Details

Primary Language English
Subjects Enzymes
Journal Section Research Article
Authors

Mustafa Kaya

Mehmet Fırat 0000-0001-5814-614X

Fatih Çağlar Çelikezen 0000-0001-5489-7384

Project Number BEBAP2023.22.
Submission Date June 23, 2025
Acceptance Date December 30, 2025
Publication Date December 31, 2025
Published in Issue Year 2025 Volume: 15 Issue: 2

Cite

IEEE M. Kaya, M. Fırat, and F. Ç. Çelikezen, “Phytochemical Profiling and in Vitro Anti-Sars-Cov-2 Evaluation of Verbascum Zerdust: Integration of Ace2-Spike Inhibition Assay and Computational Approaches”, Bitlis Eren University Journal of Science and Technology, vol. 15, no. 2, pp. 148–170, 2025, doi: 10.17678/beuscitech.1725713.