Development of Cluster Tomato Varieties Resistant/Tolerant to Tomato Yellow Leaf Curl Virus (TYLVC) and Fusarium oxysporum f.sp. radicis-lycopersici (Forl) Through Molecular Marker-Based Plant Breeding
Year 2024,
, 451 - 458, 15.09.2024
Hüseyin Basım
,
Osman Kandil
Abstract
The global spread of viral and fungal diseases has led to a decline in tomato production as farmers are forced to abandon their crops. To combat these diseases, researchers have developed techniques using molecular-assisted selection to identify plant varieties that are resistant to these diseases. This study focused on cultivating cluster tomato varieties that are resistant or tolerant to Fusarium oxysporum f.sp. radicis-lycopersici (Forl) and Tomato Yellow Leaf Curl Virus (TYLCV) using molecular DNA markers. The breeding program involved isolating genomic DNA from 69 cluster tomato varieties and then using PCR with C2-25 and Ty3P6-25 primers to identify which varieties were resistant or tolerant to Forl and TYLCV, respectively. Out of the 66 cluster tomato varieties, 20 were resistant or tolerant (RR) to Forl, 37 were heterozygous resistant or tolerant (Rr), and 9 were susceptible (rr). Among the 3 cluster tomato varieties, some were resistant or tolerant (designated as RR) to TYLCV, while others were heterozygous resistant or tolerant (Rr), and some were susceptible (rr) to the disease. This indicates that DNA molecular markers can reliably determine the presence of resistance or tolerance to Forl and TYLCV in cluster tomatoes. Molecular markers can efficiently screen thousands of tomato plants in a shorter time period, leading to the selection of more high-quality, resistant or tolerant varieties.
Ethical Statement
Ethics committee approval was not required for this study because of there was no study on animals or humans.
Supporting Institution
İstanbul Tarım A.Ş.
Thanks
The authors give thanks to İstanbul Tarım A.Ş. for funding this search.
References
- Abhary M, Patil BL, Fauquet CM. 2007. Molecular biodiversity, taxonomy, and nomenclature of tomato yellow leaf curl-like viruses. In: Czosnek, H. (ed.) Tomato yellow leaf curl virus disease. Springer, Dordrecht, the Netherlands, pp: 85-118.
- Anbinder I, Reuveni M, Azari R. 2009. Molecular dissection of Tomato leaf curl virüs resistance in tomato line TY172 derived from Solanum peruvianum. Theor Appl Genet, 119: 519-530.
- Armstrong GM, Armstrong JK. 1981. In Fusarium: Diseases, Biology and Taxonomy (Cook R. ed.), University Park, Penn State University Press, PA, US, pp: 391-399.
- Beno-Moualem D, Gusev L, Orit D, Pesis E, Meir S, Lichter A. 2004. The effects of ethylene, methyl jasmonate and 1-MCP on abscission of cherry tomatoes from the bunch and expression of endo-1, 4-β-glucanases. Plant Sci, 167 (3): 499-507.
- Can C, Yucel S, Korolev N, Katan T. 2004. First report of fusarium crown and root rot of tomato caused by Fusarium oxysporum f. sp. radicis-lycopersici in Turkey. Plant Pathol, 53(6): 814.
- Cohen S, Harpaz I. 1964. Periodic, rather than continual acquisition of a new tomato virus by its vector, the tobacco whitefly (Bemisia tabaci gennadius) 1. Entomol Exp Appl, 7(2): 155-166.
- Cohen S, Nitzany FE. 1966. Transmission and host range of the tomato yellow leaf curl virus. Phytopathology, 56(10): 1127-1131.
- Czosnek H, Ghanim M. 2011. Bemisia tabaci–Tomato Yellow Leaf Curl Virus Interaction Causing Worldwide Epidemics. In: Thompson, W. M.O (eds) The Whitefly, Bemisia tabaci (Homoptera: Aleyrodidae) Interaction with Geminivirus-Infected Host Plants. Springer, Dordrecht, the Netherlands, pp: 51-67.
- Czosnek H, Laterrot H. 1997. A worldwide survey of tomato yellow leaf curl viruses. Arch. Virol, 142: 1391-1406.
- Davies JN, Hobson GE, McGlasson WB. 1981. The constituents of tomato fruit the influence of environment, nutrition, and genotype. Crit Rev Food Sci Nutr, 15(3): 205-280.
- Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus, 12(1): 13-15.
- FAO. 2022. Food and Agriculture Organization. https://www.fao.org/land-water/databases-andsoftware/crop-information/tomato/en/ (accessed date: June 01, 2024).
- Fazio G, Stevens M, Scott JW. 1999. Identification of RAPD markers linked to Fusarium crown and root rot resistance (Frl) in tomato, Euphytica, 105: 205-210.
- Foolad MR, Panthee DR. 2012. Marker-assisted selection in tomato breeding. Crit Rev Plant Sci, 31(2): 93-123.
- Geng L, Li C, Chi S, Wang L, Chai M. 2012. Identification of the pathogen causing Fusarium crown and root rot of tomato and its growth affecting factors. Acta Hortic Sinica, 42: 449-455.
- Ghanim M, Morin S, Zeidan M, Czosnek H. 1998. Evidence for transovarial transmission of tomato yellow leaf curl virus by its vector, the whitefly Bemisia tabaci. Virology, 240(2): 295-303.
- Grube RC, Radwanski ER, Jahn M. 2000. Comparative genetics of disease resistance within the Solanaceae. Genetics, 155(2): 873-887.
- Gull A, Nayik GA. 2020. Tomato (Solanum lycoperiscon): antioxidants in vegetables and nuts – properties and health benefits. Eds.: Nayik. GA., Gull. A., Springer Nature. Singapore, pp: 191-208.
- Hanson P, Lu SF, Wang JF. 2016. Conventional and molecular marker-assisted selection and pyramiding of genes for multi-disease resistance in tomato. Sci Hortic, 201: 346-354.
- Hanson PM, Bernacchi D, Green S, Tanksley SD, Muniyappa V, Padmaja AS, Chen H, Kuo G, Fang D, Chen J. 2000. Mapping a Wild Tomato Introgression Associated with Tomato Yellow Leaf Curl Virus Resistance in a Cultivated Tomato Line. J Amer Soc Hort Sci, 125(1): 15-20.
- Hanssen IM, Lapidot M, Thomma BPHJ. 2010. Emerging viral diseases of tomato crops. Mol Plant-Microbe Interact, 23: 539-548.
- Hassan HA. 2020. Biology and integrated control of tomato wilt caused by Fusarium oxysporum lycopersici: A comprehensive review under the light of recent advancements. J Bot Res, 3(1): 84-99.
- Hedrick UP. 1919. Strutevant notes on edible plants, 1st Edition. JB, Lyon Co, Albany, US, pp: 686.
- Hull R. 2009. Comparative plant virology, 2nd ed. Academic Press, Norwich, UK, pp: 400.
- Jensen KS, Betteray BV, Smeets J, Ji Y, Scott JW, Mejia L, Havey MJ, Maxwell DP. 2007. Co-dominant SCAR marker, P6-25, for detection of the ty-3, Ty-3, and Ty-3a alleles at 25cM of chromosome 6 of tomato. College of Agricultural and Life Sciences at University of Wisconsin-Madison, and by grants from Unilever Best foods Ltd. and the Florida Tomato Committee to JW. Scott, Florida, US, pp: 25.
- Ji Y, Schuster DJ, Scott JW. 2007. Ty-3, a begomovirus resistance
locus near the Tomato yellow leaf curl virus resistance locus Ty-1 on chromosome 6 of tomato, Mol Breed, 20: 271-284.
- Ji Y, Scott JW, Schuster DJ, Maxwell DP. 2009. Molecular Mapping of Ty-4, a New Tomato Yellow Leaf Curl Virus Resistance Locus on Chromosome 3 of Tomato. J Amer Soc Hort Sci, 134(2): 281-288.
- Junker A, Muraya MM, Weigelt-Fischer K. 2015. Optimizing experimental procedures for quantitative assessment of crop plant performance in high-throughput phenotyping systems. Front Plant Sci, 5: 1-21.
- Kil EJ, Kim S, Lee Ye-Ji, Byun Hee-S, Park J, Seo H, Kim Chang-S, Shim Jae-K, Lee Jung-H, Kim Ji-K, Lee Kyeong-Y, Choi, Hong-S, Lee S. 2016. Tomato yellow leafroll virus (TYLCV-IL): a seed-transmissible geminivirus in tomatoes. Sci Rep, 8 (6): 19013.
- Laterrot H, Moretti A. 1991. Allelism of various FORL resistance sources. Rep Tomato Genet Coop, 4: 28-30.
- Luria N, Smith E, Reingold V, Bekelman I, Lapidot M, Levin I. Elad N, Tam Y, Sela N, Abu-Ras A, Ezra N, Haberman A, Yitzhak K, Lachman O, Dombrosvsky A. 2017. A new Israeli Tobamovirus isolate infects tomato plants harboring Tm-22 resistance genes. PLoS ONE, 12(1): e0170429.
- Moriones E, García-Andrés S, Navas-Castillo J. 2007. Recombination in the TYLCV Complex: a Mechanism to Increase Genetic Diversity. Implications for Plant Resistance Development. In: Czosnek, H. (eds) Tomato Yellow Leaf Curl Virus Disease. Springer, Dordrecht, the Netherlands, pp: 119-138.
- Moriones E, Navas-Castillo J. 2000. Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Virus Res, 71: 123-13.
- Nevame AYM, Xia L, Nchongboh CG, Hasan MM, Alam, MA, Yongbo L, Wenting Z, Yafei H, Emon RM, İsmail MR, Efisue A, Gang S, Wenhu L, Longting S. 2018. Development of a new molecular marker for the resistance to tomato yellow leaf curl virus. BioMed Res Int, 2018: 8120281.
- Salem N, Mansour A, Ciuffo M, Falk BW, Turina M. 2016. A new tobamovirus infecting tomato crops in Jordan. Arch Vir, 161: 503-506.
- Sonoda RM. 1976. The occurrence of a fusarium [oxysporum] root rot of tomatoes in south Florida. Plant Dis Rep, 60: 271.
- Staniaszek M, Szczechura W, Marczewski W. 2014. Identification of a new molecular marker C2-25 linked to the Fusarium oxysporum f. sp. radicis-lycopersici resistance Frl gene in tomato. Czech J Genet Plant Breed, 50(4): 285-287.
- Szczechura W, Staniaszek M, Habdas H. 2013. Fusarium oxysporum f.sp. radicis-lycopersici–the cause of Fusarium crown and root rot in tomato cultivation. J Plant Prot Res, 53: 2-6.
- Tanksley SD, Ganal MW, Prince JP, Devicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB. 1992. High-density molecular linkage maps of the tomato and potato genomes. Genetics, 132(4): 1141-1160.
- Tanksley SD. 1983. Molecular markers in plant breeding. Plant Mol Biol Rep, 1: 3-8.
- Toor RK, Savage GP, Heeb A. 2006. Influence of different types of fertilizers on the major antioxidant components of tomatoes. J Food Compos Anal, 19: 20-27.
- Truong H, Choi HS, Cho MC, Lee HE. 2011. Conversion of the random amplified polymorphic DNA (RAPD) marker UBC#116 linked to Fusarium crown and root rot resistance gene (Frl) into a co-dominant sequence characterized amplified region (SCAR) marker for marker-assisted selection of tomato. Afr J Biotechnol, 10: 11130-11136.
- Vakalounakis DJ, Laterrot H, Moretti A, Ligoxigakis EK, Smardas K. 1997. Linkage between Fr1 (Fusarium oxysporium f.sp. radicis-lycopersici resistance) and Tm-2 (tobacco mosaic virus resistance-2) loci in tomato (Lycopersicon esculentum), Ann Appl Biol, 130: 319-323.
- Wani SH, Sanghera GS, Singh NB. 2010. Biotechnology and plant disease control-role of RNA interference. Amer J Plant Sci, 1(2): 55-68.
- Yang X, Caro M, Hutton SF. 2014. Precision mapping of the tomato yellow leafroll virus resistance gene Ty-2 on chromosome 11 of tomato. Mol Breeding, 34 (2): 749-760.
- Yılmaz MA. 1978. Tomato yellow leaf curl virus on tomato. Doğa, 4: 248-250.
- Zamir D, Ekstein-Michelson I, Zakay Y. 1994. Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, TY-1. Theor Appl Genet, 88: 141-146.
Year 2024,
, 451 - 458, 15.09.2024
Hüseyin Basım
,
Osman Kandil
References
- Abhary M, Patil BL, Fauquet CM. 2007. Molecular biodiversity, taxonomy, and nomenclature of tomato yellow leaf curl-like viruses. In: Czosnek, H. (ed.) Tomato yellow leaf curl virus disease. Springer, Dordrecht, the Netherlands, pp: 85-118.
- Anbinder I, Reuveni M, Azari R. 2009. Molecular dissection of Tomato leaf curl virüs resistance in tomato line TY172 derived from Solanum peruvianum. Theor Appl Genet, 119: 519-530.
- Armstrong GM, Armstrong JK. 1981. In Fusarium: Diseases, Biology and Taxonomy (Cook R. ed.), University Park, Penn State University Press, PA, US, pp: 391-399.
- Beno-Moualem D, Gusev L, Orit D, Pesis E, Meir S, Lichter A. 2004. The effects of ethylene, methyl jasmonate and 1-MCP on abscission of cherry tomatoes from the bunch and expression of endo-1, 4-β-glucanases. Plant Sci, 167 (3): 499-507.
- Can C, Yucel S, Korolev N, Katan T. 2004. First report of fusarium crown and root rot of tomato caused by Fusarium oxysporum f. sp. radicis-lycopersici in Turkey. Plant Pathol, 53(6): 814.
- Cohen S, Harpaz I. 1964. Periodic, rather than continual acquisition of a new tomato virus by its vector, the tobacco whitefly (Bemisia tabaci gennadius) 1. Entomol Exp Appl, 7(2): 155-166.
- Cohen S, Nitzany FE. 1966. Transmission and host range of the tomato yellow leaf curl virus. Phytopathology, 56(10): 1127-1131.
- Czosnek H, Ghanim M. 2011. Bemisia tabaci–Tomato Yellow Leaf Curl Virus Interaction Causing Worldwide Epidemics. In: Thompson, W. M.O (eds) The Whitefly, Bemisia tabaci (Homoptera: Aleyrodidae) Interaction with Geminivirus-Infected Host Plants. Springer, Dordrecht, the Netherlands, pp: 51-67.
- Czosnek H, Laterrot H. 1997. A worldwide survey of tomato yellow leaf curl viruses. Arch. Virol, 142: 1391-1406.
- Davies JN, Hobson GE, McGlasson WB. 1981. The constituents of tomato fruit the influence of environment, nutrition, and genotype. Crit Rev Food Sci Nutr, 15(3): 205-280.
- Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus, 12(1): 13-15.
- FAO. 2022. Food and Agriculture Organization. https://www.fao.org/land-water/databases-andsoftware/crop-information/tomato/en/ (accessed date: June 01, 2024).
- Fazio G, Stevens M, Scott JW. 1999. Identification of RAPD markers linked to Fusarium crown and root rot resistance (Frl) in tomato, Euphytica, 105: 205-210.
- Foolad MR, Panthee DR. 2012. Marker-assisted selection in tomato breeding. Crit Rev Plant Sci, 31(2): 93-123.
- Geng L, Li C, Chi S, Wang L, Chai M. 2012. Identification of the pathogen causing Fusarium crown and root rot of tomato and its growth affecting factors. Acta Hortic Sinica, 42: 449-455.
- Ghanim M, Morin S, Zeidan M, Czosnek H. 1998. Evidence for transovarial transmission of tomato yellow leaf curl virus by its vector, the whitefly Bemisia tabaci. Virology, 240(2): 295-303.
- Grube RC, Radwanski ER, Jahn M. 2000. Comparative genetics of disease resistance within the Solanaceae. Genetics, 155(2): 873-887.
- Gull A, Nayik GA. 2020. Tomato (Solanum lycoperiscon): antioxidants in vegetables and nuts – properties and health benefits. Eds.: Nayik. GA., Gull. A., Springer Nature. Singapore, pp: 191-208.
- Hanson P, Lu SF, Wang JF. 2016. Conventional and molecular marker-assisted selection and pyramiding of genes for multi-disease resistance in tomato. Sci Hortic, 201: 346-354.
- Hanson PM, Bernacchi D, Green S, Tanksley SD, Muniyappa V, Padmaja AS, Chen H, Kuo G, Fang D, Chen J. 2000. Mapping a Wild Tomato Introgression Associated with Tomato Yellow Leaf Curl Virus Resistance in a Cultivated Tomato Line. J Amer Soc Hort Sci, 125(1): 15-20.
- Hanssen IM, Lapidot M, Thomma BPHJ. 2010. Emerging viral diseases of tomato crops. Mol Plant-Microbe Interact, 23: 539-548.
- Hassan HA. 2020. Biology and integrated control of tomato wilt caused by Fusarium oxysporum lycopersici: A comprehensive review under the light of recent advancements. J Bot Res, 3(1): 84-99.
- Hedrick UP. 1919. Strutevant notes on edible plants, 1st Edition. JB, Lyon Co, Albany, US, pp: 686.
- Hull R. 2009. Comparative plant virology, 2nd ed. Academic Press, Norwich, UK, pp: 400.
- Jensen KS, Betteray BV, Smeets J, Ji Y, Scott JW, Mejia L, Havey MJ, Maxwell DP. 2007. Co-dominant SCAR marker, P6-25, for detection of the ty-3, Ty-3, and Ty-3a alleles at 25cM of chromosome 6 of tomato. College of Agricultural and Life Sciences at University of Wisconsin-Madison, and by grants from Unilever Best foods Ltd. and the Florida Tomato Committee to JW. Scott, Florida, US, pp: 25.
- Ji Y, Schuster DJ, Scott JW. 2007. Ty-3, a begomovirus resistance
locus near the Tomato yellow leaf curl virus resistance locus Ty-1 on chromosome 6 of tomato, Mol Breed, 20: 271-284.
- Ji Y, Scott JW, Schuster DJ, Maxwell DP. 2009. Molecular Mapping of Ty-4, a New Tomato Yellow Leaf Curl Virus Resistance Locus on Chromosome 3 of Tomato. J Amer Soc Hort Sci, 134(2): 281-288.
- Junker A, Muraya MM, Weigelt-Fischer K. 2015. Optimizing experimental procedures for quantitative assessment of crop plant performance in high-throughput phenotyping systems. Front Plant Sci, 5: 1-21.
- Kil EJ, Kim S, Lee Ye-Ji, Byun Hee-S, Park J, Seo H, Kim Chang-S, Shim Jae-K, Lee Jung-H, Kim Ji-K, Lee Kyeong-Y, Choi, Hong-S, Lee S. 2016. Tomato yellow leafroll virus (TYLCV-IL): a seed-transmissible geminivirus in tomatoes. Sci Rep, 8 (6): 19013.
- Laterrot H, Moretti A. 1991. Allelism of various FORL resistance sources. Rep Tomato Genet Coop, 4: 28-30.
- Luria N, Smith E, Reingold V, Bekelman I, Lapidot M, Levin I. Elad N, Tam Y, Sela N, Abu-Ras A, Ezra N, Haberman A, Yitzhak K, Lachman O, Dombrosvsky A. 2017. A new Israeli Tobamovirus isolate infects tomato plants harboring Tm-22 resistance genes. PLoS ONE, 12(1): e0170429.
- Moriones E, García-Andrés S, Navas-Castillo J. 2007. Recombination in the TYLCV Complex: a Mechanism to Increase Genetic Diversity. Implications for Plant Resistance Development. In: Czosnek, H. (eds) Tomato Yellow Leaf Curl Virus Disease. Springer, Dordrecht, the Netherlands, pp: 119-138.
- Moriones E, Navas-Castillo J. 2000. Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Virus Res, 71: 123-13.
- Nevame AYM, Xia L, Nchongboh CG, Hasan MM, Alam, MA, Yongbo L, Wenting Z, Yafei H, Emon RM, İsmail MR, Efisue A, Gang S, Wenhu L, Longting S. 2018. Development of a new molecular marker for the resistance to tomato yellow leaf curl virus. BioMed Res Int, 2018: 8120281.
- Salem N, Mansour A, Ciuffo M, Falk BW, Turina M. 2016. A new tobamovirus infecting tomato crops in Jordan. Arch Vir, 161: 503-506.
- Sonoda RM. 1976. The occurrence of a fusarium [oxysporum] root rot of tomatoes in south Florida. Plant Dis Rep, 60: 271.
- Staniaszek M, Szczechura W, Marczewski W. 2014. Identification of a new molecular marker C2-25 linked to the Fusarium oxysporum f. sp. radicis-lycopersici resistance Frl gene in tomato. Czech J Genet Plant Breed, 50(4): 285-287.
- Szczechura W, Staniaszek M, Habdas H. 2013. Fusarium oxysporum f.sp. radicis-lycopersici–the cause of Fusarium crown and root rot in tomato cultivation. J Plant Prot Res, 53: 2-6.
- Tanksley SD, Ganal MW, Prince JP, Devicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB. 1992. High-density molecular linkage maps of the tomato and potato genomes. Genetics, 132(4): 1141-1160.
- Tanksley SD. 1983. Molecular markers in plant breeding. Plant Mol Biol Rep, 1: 3-8.
- Toor RK, Savage GP, Heeb A. 2006. Influence of different types of fertilizers on the major antioxidant components of tomatoes. J Food Compos Anal, 19: 20-27.
- Truong H, Choi HS, Cho MC, Lee HE. 2011. Conversion of the random amplified polymorphic DNA (RAPD) marker UBC#116 linked to Fusarium crown and root rot resistance gene (Frl) into a co-dominant sequence characterized amplified region (SCAR) marker for marker-assisted selection of tomato. Afr J Biotechnol, 10: 11130-11136.
- Vakalounakis DJ, Laterrot H, Moretti A, Ligoxigakis EK, Smardas K. 1997. Linkage between Fr1 (Fusarium oxysporium f.sp. radicis-lycopersici resistance) and Tm-2 (tobacco mosaic virus resistance-2) loci in tomato (Lycopersicon esculentum), Ann Appl Biol, 130: 319-323.
- Wani SH, Sanghera GS, Singh NB. 2010. Biotechnology and plant disease control-role of RNA interference. Amer J Plant Sci, 1(2): 55-68.
- Yang X, Caro M, Hutton SF. 2014. Precision mapping of the tomato yellow leafroll virus resistance gene Ty-2 on chromosome 11 of tomato. Mol Breeding, 34 (2): 749-760.
- Yılmaz MA. 1978. Tomato yellow leaf curl virus on tomato. Doğa, 4: 248-250.
- Zamir D, Ekstein-Michelson I, Zakay Y. 1994. Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, TY-1. Theor Appl Genet, 88: 141-146.