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First Detection of ‘Candidatus Phytoplasma australasia’ in Robinia pseudoacacia: Molecular Characterization and Tissue-Specific Distribution

Year 2025, Volume: 8 Issue: 4, 487 - 494, 15.07.2025
https://doi.org/10.47115/bsagriculture.1651613

Abstract

Candidatus phytoplasma affects a wide range of host plants. In recent years, the severity and distribution of the disease have increase many fold. The present study isolated the pathogen from leaves (chlorosis), dried branches, and the other tissues of the infected tree. Acacia trees (n=15) showing severe yellowing and desiccation in the landscape areas of Şanlıurfa province were sampled from the buds (V-shaped) in three different parts of the branches, backward from the top of the branches during the flowering period, and from the middle veins of the leaves on the same branch during the leafing period. Samples were initially amplified using the universal primer pair R16F1/R16R0 and subsequently subjected to nested PCR with the primer pair R16F2n/R2. The results indicated that, on average, 2 out of 15 buds collected from the apical parts of the branches, 11 out of 15 from the middle, and 6 out of 15 from the basal parts were infected with ‘Candidatus Phytoplasma australasia’. Moreover, all samples collected from the midribs of these 15 trees were found to be infected with Ca. P. australasia.

Ethical Statement

Since no studies involving humans or animals were conducted, ethical committee approval was not required for this study.

References

  • Andre A, Maucourt M, Moing A, Rolin D, Renaudin JP. 2005. Sugar import and phytopathogenicity of Spiroplasma citri: Glucose and fructose play distinct roles. Mol Plant Microbe Interact, 18: 33-42.
  • Ahrens U, Seemüller E. 1992. Detection of DNA of plant pathogenic mycoplasmalike organisms by a polymerase chain reaction that amplifies a sequence of the 16S rRNA gene. Phytopathology, 82: 828-832.
  • Ayvaci H, Guldur ME, Simsek E, Dikilitas M. 2020. First report of a ‘Candidatus Phytoplasma australasia’-related strain (16SrII-D subgroup) associated with alfalfa leaf chlorosis disease in Turkey. New Dis Rep, 42(20): 2044-0588.
  • Ayvacı H, Güldür ME, Dikilitas M. 2022. Physiological and biochemical changes in lucerne (Medicago sativa) plants infected with 'Candidatus Phytoplasma australasia’-related strain (16SrII-D subgroup). Plant Pathol J, 38(2): 146.
  • Bertaccini A, Duduk B, Paltrinieri S, Contaldo N. 2014. Phytoplasmas and phytoplasma diseases: a severe threat to agriculture. Am J Plant Sci, 5(12): 1763-1788.
  • Bez C, Esposito A, Thuy HD, Nguyen HM, Valè G, Licastro D, Bertani I, Piazza S, Venturi V. 2021. The rice foot rot pathogen Dickeya zeae alters the in‐field plant microbiome. Environ Microbiol, 23(12): 7671-7687.
  • Brzin J, Ermacora P, Osler R, Loi N, Ravnikar M, Petrovič N. 2003. Detection of apple proliferation phytoplasma by ELISA and PCR in growing and dormant apple trees. J Plant Dis Prot, 110(5): 476-483.
  • Chen D, Ainsworth AJ. 1992. Glucan administration potentiates the immune defense mechanisms of channel catfish, Ictalurus punctatus Rafinesque. J Fish Dis, 15(4): 295-304.
  • Davis RE, Lee IM. 1993. Cluster-specific polymerase chain reaction amplification of 16S rDNA sequences for detecting and identifying mycoplasmalike organisms. Phytopathology, 83: 1008-1011.
  • Dermastia M, Bertaccini A, Constable F, Mehle N. 2017. Grapevine yellows diseases and their phytoplasma agents: Biology and detection. In: Interactions between grapevines and grapevine yellows phytoplasma BN and FD. Springer, Cham, Switzerland, pp: 54.
  • Eisenreich W, Rudel T, Heesemann J, Goebel W. 2019. How viral and intracellular bacterial pathogens reprogram the metabolism of host cells to allow their intracellular replication. Front Cell Infect Microbiol, 9: 42.
  • Esmaeilzadeh-Hosseini SA, Babaei G, Purmohamadi S. 2019. First report of a 16SrII phytoplasma (subgroup D) associated with Robinia pseudoacacia witches' broom and dieback in Iran. New Dis Rep, 40(1): 19.
  • Gundersen DE, Lee IM. 1996. Ultrasensitive detection of phytoplasmas by nested-PCR assays using two universal primer pairs. Phytopatol Mediterr, 35: 144-151.
  • Hou JF. 2012. Studies on the sucrose contents of fresh seeds and functional analysis of key genes involved in sugar accumulation in soybean. Nanjing Agric Univ, Nanjing, China, pp: 125.
  • Jiang H, Wei W, Saiki T, Kawakita H, Watanabe K, Sato M. 2004. Distribution patterns of mulberry dwarf phytoplasma in reproductive organs, winter buds, and roots of mulberry trees. J Gen Plant Pathol, 70: 168-173.
  • Kilic N, Ayvacı H, Güldür ME, Dikilitas M. 2022. First report of ‘Candidatus Phytoplasma australasia’-related strain (16SrII-D) in Pyracantha angustifolia (narrowleaf firethorn). Australas Plant Dis Notes, 18(1): 1.
  • Korkmazoğlu G. 2018. Şanlıurfa ili peyzaj mimari alanlarında bulunan akasya ağaçlarında fitoplazma hastalığının moleküler yöntemlerle saptanması. Harran Univ, Fen Bilimleri Enstitüsü, Şanlıurfa, Türkiye, pp: 72.
  • Lee IM, Gundersen DE, Hammond RW, Davis RE. 1994. Use of mycoplasma-like organism (MLO) group-specific oligonucleotide primers for nested-PCR assays to detect mixed-MLO infections in a single host plant. Phytopathology, 84: 559-566.
  • Lemmetty A, Latvala-Kilby S, Lehto K. 2001. Comparison of different isolates of black currant reversion virus. Acta Hortic, 551: 45-49.
  • Luis A, Gil N, Amaral ME, Duarte AP. 2012. Antioxidant activities of extracts from Acacia melanoxylon, Acacia dealbata, and Olea europaea and alkaloids estimation. Int J Pharm Pharm Sci, 4: 225-231.
  • Marcone C. 2014. Molecular biology and pathogenicity of phytoplasmas. Ann Appl Biol, 165(2): 199-221.
  • Maust BE, Espadas F, Talavera C, Aguilar M, Santamaría JM, Oropeza C. 2003. Changes in carbohydrate metabolism in coconut palms infected with the lethal yellowing phytoplasma. Phytopathology, 93(8): 976-981.
  • Musidlak O, Nawrot R, Goździcka-Józefiak A. 2017. Which plant proteins are involved in antiviral defense? Review on in vivo and in vitro activities of selected plant proteins against viruses. Int J Mol Sci, 18(11): 2300.
  • Rao GP, Bahadur A, Das SC, Ranebennur H, Mitra S, Kumar M, Kumar S. 2020. First report of 16Sr II-C subgroup phytoplasma association with Acacia mangium in Tripura. For Pathol, 50(1): e12573.
  • Sahashi N, Nakamura H, Yoshikawa N, Kubono T, Shoji T, Takahashi T. 1995. Distribution and seasonal variation in detection of phytoplasma in bark phloem tissues of single Paulownia trees infected with witches' broom. Jpn J Phytopathol, 61(5): 481-484.
  • Sood M, Kapoor D, Kumar V, Kalia N, Bhardwaj R, Sidhu GP, Sharma A. 2021. Mechanisms of plant defense under pathogen stress: A review. Curr Protein Pept Sci, 22(5): 376-395.
  • Usta M, Güller A, Sipahioğlu HM. 2023. First report of ‘Candidatus Phytoplasma australasia’ strain related to witches’-broom of tomato in Türkiye. YYU J Agric Sci, 33(1): 54-63.
  • Wojda T, Klisz M, Jastrzebowski S, Mionskowski M, Szyp-Borowska I, Szczygiel K. 2015. The geographical distribution of the black locust (Robinia pseudoacacia L.) in Poland and its role on non-forest land. Pap Glob Change, 22: 101-113.
  • Van Kleunen M, Dawson W, Essl F, Pergl J, Winter M, Weber E, Kreft H, Weigelt P, Kartesz J, Nishino M, Antonova LA, Barcelona JF, Cabezas FJ, Cárdenas D, Cárdenas-Toro J, Castaño N, Chacón E, Chatelain C, Ebel AL, Figueiredo E, Fuentes N, Groom QJ, Henderson L, Inderjit, Kupriyanov A, Masciadri S, Meerman J, Morozova O, Moser D, Nickrent DL, Patzelt A, Pelser PB, Baptiste MP, Poopath M, Schulze M, Seebens H, Shu W, Thomas J, Velayos M, Wieringa JJ, Pyšek P. 2015. Global exchange and accumulation of non-native plants. Nature, 525: 100-103.
  • Xue C, Liu Z, Dai L, Bu J, Liu M, Zhao Z, Jiang Z, Gao W, Zhao J. 2018. Changing host photosynthetic, carbohydrate, and energy metabolisms play important roles in phytoplasma infection. Phytopathology, 108(9): 1067-1077.
  • Zhao Y, Wei W, Lee IM, Shao J, Suo X, Davis RE. 2009. Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in the analysis of the peach X-disease phytoplasma group (16SrIII). Int J Syst Evol Microbiol, 59: 2582-2593.

First Detection of ‘Candidatus Phytoplasma australasia’ in Robinia pseudoacacia: Molecular Characterization and Tissue-Specific Distribution

Year 2025, Volume: 8 Issue: 4, 487 - 494, 15.07.2025
https://doi.org/10.47115/bsagriculture.1651613

Abstract

Candidatus phytoplasma affects a wide range of host plants. In recent years, the severity and distribution of the disease have increase many fold. The present study isolated the pathogen from leaves (chlorosis), dried branches, and the other tissues of the infected tree. Acacia trees (n=15) showing severe yellowing and desiccation in the landscape areas of Şanlıurfa province were sampled from the buds (V-shaped) in three different parts of the branches, backward from the top of the branches during the flowering period, and from the middle veins of the leaves on the same branch during the leafing period. Samples were initially amplified using the universal primer pair R16F1/R16R0 and subsequently subjected to nested PCR with the primer pair R16F2n/R2. The results indicated that, on average, 2 out of 15 buds collected from the apical parts of the branches, 11 out of 15 from the middle, and 6 out of 15 from the basal parts were infected with ‘Candidatus Phytoplasma australasia’. Moreover, all samples collected from the midribs of these 15 trees were found to be infected with Ca. P. australasia.

Ethical Statement

Since no studies involving humans or animals were conducted, ethical committee approval was not required for this study.

References

  • Andre A, Maucourt M, Moing A, Rolin D, Renaudin JP. 2005. Sugar import and phytopathogenicity of Spiroplasma citri: Glucose and fructose play distinct roles. Mol Plant Microbe Interact, 18: 33-42.
  • Ahrens U, Seemüller E. 1992. Detection of DNA of plant pathogenic mycoplasmalike organisms by a polymerase chain reaction that amplifies a sequence of the 16S rRNA gene. Phytopathology, 82: 828-832.
  • Ayvaci H, Guldur ME, Simsek E, Dikilitas M. 2020. First report of a ‘Candidatus Phytoplasma australasia’-related strain (16SrII-D subgroup) associated with alfalfa leaf chlorosis disease in Turkey. New Dis Rep, 42(20): 2044-0588.
  • Ayvacı H, Güldür ME, Dikilitas M. 2022. Physiological and biochemical changes in lucerne (Medicago sativa) plants infected with 'Candidatus Phytoplasma australasia’-related strain (16SrII-D subgroup). Plant Pathol J, 38(2): 146.
  • Bertaccini A, Duduk B, Paltrinieri S, Contaldo N. 2014. Phytoplasmas and phytoplasma diseases: a severe threat to agriculture. Am J Plant Sci, 5(12): 1763-1788.
  • Bez C, Esposito A, Thuy HD, Nguyen HM, Valè G, Licastro D, Bertani I, Piazza S, Venturi V. 2021. The rice foot rot pathogen Dickeya zeae alters the in‐field plant microbiome. Environ Microbiol, 23(12): 7671-7687.
  • Brzin J, Ermacora P, Osler R, Loi N, Ravnikar M, Petrovič N. 2003. Detection of apple proliferation phytoplasma by ELISA and PCR in growing and dormant apple trees. J Plant Dis Prot, 110(5): 476-483.
  • Chen D, Ainsworth AJ. 1992. Glucan administration potentiates the immune defense mechanisms of channel catfish, Ictalurus punctatus Rafinesque. J Fish Dis, 15(4): 295-304.
  • Davis RE, Lee IM. 1993. Cluster-specific polymerase chain reaction amplification of 16S rDNA sequences for detecting and identifying mycoplasmalike organisms. Phytopathology, 83: 1008-1011.
  • Dermastia M, Bertaccini A, Constable F, Mehle N. 2017. Grapevine yellows diseases and their phytoplasma agents: Biology and detection. In: Interactions between grapevines and grapevine yellows phytoplasma BN and FD. Springer, Cham, Switzerland, pp: 54.
  • Eisenreich W, Rudel T, Heesemann J, Goebel W. 2019. How viral and intracellular bacterial pathogens reprogram the metabolism of host cells to allow their intracellular replication. Front Cell Infect Microbiol, 9: 42.
  • Esmaeilzadeh-Hosseini SA, Babaei G, Purmohamadi S. 2019. First report of a 16SrII phytoplasma (subgroup D) associated with Robinia pseudoacacia witches' broom and dieback in Iran. New Dis Rep, 40(1): 19.
  • Gundersen DE, Lee IM. 1996. Ultrasensitive detection of phytoplasmas by nested-PCR assays using two universal primer pairs. Phytopatol Mediterr, 35: 144-151.
  • Hou JF. 2012. Studies on the sucrose contents of fresh seeds and functional analysis of key genes involved in sugar accumulation in soybean. Nanjing Agric Univ, Nanjing, China, pp: 125.
  • Jiang H, Wei W, Saiki T, Kawakita H, Watanabe K, Sato M. 2004. Distribution patterns of mulberry dwarf phytoplasma in reproductive organs, winter buds, and roots of mulberry trees. J Gen Plant Pathol, 70: 168-173.
  • Kilic N, Ayvacı H, Güldür ME, Dikilitas M. 2022. First report of ‘Candidatus Phytoplasma australasia’-related strain (16SrII-D) in Pyracantha angustifolia (narrowleaf firethorn). Australas Plant Dis Notes, 18(1): 1.
  • Korkmazoğlu G. 2018. Şanlıurfa ili peyzaj mimari alanlarında bulunan akasya ağaçlarında fitoplazma hastalığının moleküler yöntemlerle saptanması. Harran Univ, Fen Bilimleri Enstitüsü, Şanlıurfa, Türkiye, pp: 72.
  • Lee IM, Gundersen DE, Hammond RW, Davis RE. 1994. Use of mycoplasma-like organism (MLO) group-specific oligonucleotide primers for nested-PCR assays to detect mixed-MLO infections in a single host plant. Phytopathology, 84: 559-566.
  • Lemmetty A, Latvala-Kilby S, Lehto K. 2001. Comparison of different isolates of black currant reversion virus. Acta Hortic, 551: 45-49.
  • Luis A, Gil N, Amaral ME, Duarte AP. 2012. Antioxidant activities of extracts from Acacia melanoxylon, Acacia dealbata, and Olea europaea and alkaloids estimation. Int J Pharm Pharm Sci, 4: 225-231.
  • Marcone C. 2014. Molecular biology and pathogenicity of phytoplasmas. Ann Appl Biol, 165(2): 199-221.
  • Maust BE, Espadas F, Talavera C, Aguilar M, Santamaría JM, Oropeza C. 2003. Changes in carbohydrate metabolism in coconut palms infected with the lethal yellowing phytoplasma. Phytopathology, 93(8): 976-981.
  • Musidlak O, Nawrot R, Goździcka-Józefiak A. 2017. Which plant proteins are involved in antiviral defense? Review on in vivo and in vitro activities of selected plant proteins against viruses. Int J Mol Sci, 18(11): 2300.
  • Rao GP, Bahadur A, Das SC, Ranebennur H, Mitra S, Kumar M, Kumar S. 2020. First report of 16Sr II-C subgroup phytoplasma association with Acacia mangium in Tripura. For Pathol, 50(1): e12573.
  • Sahashi N, Nakamura H, Yoshikawa N, Kubono T, Shoji T, Takahashi T. 1995. Distribution and seasonal variation in detection of phytoplasma in bark phloem tissues of single Paulownia trees infected with witches' broom. Jpn J Phytopathol, 61(5): 481-484.
  • Sood M, Kapoor D, Kumar V, Kalia N, Bhardwaj R, Sidhu GP, Sharma A. 2021. Mechanisms of plant defense under pathogen stress: A review. Curr Protein Pept Sci, 22(5): 376-395.
  • Usta M, Güller A, Sipahioğlu HM. 2023. First report of ‘Candidatus Phytoplasma australasia’ strain related to witches’-broom of tomato in Türkiye. YYU J Agric Sci, 33(1): 54-63.
  • Wojda T, Klisz M, Jastrzebowski S, Mionskowski M, Szyp-Borowska I, Szczygiel K. 2015. The geographical distribution of the black locust (Robinia pseudoacacia L.) in Poland and its role on non-forest land. Pap Glob Change, 22: 101-113.
  • Van Kleunen M, Dawson W, Essl F, Pergl J, Winter M, Weber E, Kreft H, Weigelt P, Kartesz J, Nishino M, Antonova LA, Barcelona JF, Cabezas FJ, Cárdenas D, Cárdenas-Toro J, Castaño N, Chacón E, Chatelain C, Ebel AL, Figueiredo E, Fuentes N, Groom QJ, Henderson L, Inderjit, Kupriyanov A, Masciadri S, Meerman J, Morozova O, Moser D, Nickrent DL, Patzelt A, Pelser PB, Baptiste MP, Poopath M, Schulze M, Seebens H, Shu W, Thomas J, Velayos M, Wieringa JJ, Pyšek P. 2015. Global exchange and accumulation of non-native plants. Nature, 525: 100-103.
  • Xue C, Liu Z, Dai L, Bu J, Liu M, Zhao Z, Jiang Z, Gao W, Zhao J. 2018. Changing host photosynthetic, carbohydrate, and energy metabolisms play important roles in phytoplasma infection. Phytopathology, 108(9): 1067-1077.
  • Zhao Y, Wei W, Lee IM, Shao J, Suo X, Davis RE. 2009. Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in the analysis of the peach X-disease phytoplasma group (16SrIII). Int J Syst Evol Microbiol, 59: 2582-2593.
There are 31 citations in total.

Details

Primary Language English
Subjects Agricultural Engineering (Other)
Journal Section Research Articles
Authors

Hümeyra Ayvacı 0000-0002-5620-4147

Mehmet Ertuğrul Güldür 0000-0002-3374-5602

Murat Dikilitas 0000-0002-7399-4750

Early Pub Date July 12, 2025
Publication Date July 15, 2025
Submission Date March 5, 2025
Acceptance Date June 17, 2025
Published in Issue Year 2025 Volume: 8 Issue: 4

Cite

APA Ayvacı, H., Güldür, M. E., & Dikilitas, M. (2025). First Detection of ‘Candidatus Phytoplasma australasia’ in Robinia pseudoacacia: Molecular Characterization and Tissue-Specific Distribution. Black Sea Journal of Agriculture, 8(4), 487-494. https://doi.org/10.47115/bsagriculture.1651613

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