Research Article
BibTex RIS Cite

Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone

Year 2010, Volume: 7 Issue: 1, 1 - 16, 01.02.2010

Abstract

The possible tautomeric forms of 3-(1-amino-ethylidene)-2methoxy-2-oxo-2,3-
dihydro-2λ^5
-benzo[e][1,2]oxaphosphinin-4-one molecule were searched by utilizing HartreeFock
(HF) and Density Functional Theory (DFT) methods. The computed bond lengths
and bond angles were compared with the experimental data. The structure, energies and
relative stability of tautomers were compared and analyzed. The amine-keto and iminoenol
tautomerism was taken into account to rationalize the difference in reactivity between
the two forms. The keto form was found to be more stable than the enol form. The acidity
constant and physicochemical parameters were computed by semi-empirical methods.

References

  • [1] A. M. Magill and B. F. Yates, An assessment of theoretical protocols for calculation of the pKa values of the prototype imidazolium cation, Aust. J. Chem. 57 (2004), 1205–1210.
  • [2] K. J. Cavell, A. M. Magill, and B. F. Yates, Basicity of nucleophilic carbenes in aqueous and nonaqueous solvents-theoretical predictions, J. Am. Chem. Soc. 126 (2004), 8717–8274.
  • [3] Y. Fu, L. Liu, H.-Z. Yu, Y. Wang, and Q.-X. Guo, Quantum-chemical predictions of absolute standard redox potentials of diverse organic molecules and free radicals in acetonitrile, J. Am. Chem. Soc. 127 (2005), 7227–7234.
  • [4] A. M. Toth, M. D. Liptak, D. L. Philips, and G. C. Shields, Accurate relative pKa calculations for carboxylic acids using complete basis set and Gaussian-n models combined with continuum solvation methods, J. Chem. Phys. 114 (2001), 4595–4606.
  • [5] C. O. Silva, E. C. da Silva, and M. A. C. Nascimento, Ab initio calculations of absolute pKa values in aqueous solution II. Aliphatic alcohols, thiols, and halogenated carboxylic acids, J. Phys. Chem. A 104 (2000), 2402–2409.
  • [6] E. Budzisz, Synthesis, reactions and biological activity of phosphorus-containing derivatives of chromone and coumarin, Phosphor Sulfur Silicon 179 (2004), 2131–2147.
  • [7] E. Budzisz, W la´sciwo´sci biologiczne fosfonianowych pochodnych chromonu i kumaryny, Farmacja Polska 59 (2003), 677–683.
  • [8] E. Budzisz, J. Graczyk-Wojciechowska, R. Zieba, and B. Nawrot, A new series of 2-substituted 3-phosphonic derivatives of chromone. Part II. Synthesis, in vitro alkylating and in vivo antitumor activity, New J. Chem 26 (2002), 1799–1804.
  • [9] R. Deng, J. Wu, and L. Long, Lanthanide complexes of bis(4-hydroxy-3-coumarinyl) acetic acid and their anticoagulant action, Bul. Soc. Chim. Belg. 101 (1992), 439–443.
  • [10] I. Kostova, I. Manolov, S. Konstantinov, and M. Karaivanova, Synthesis, physicochemical characterisation and cytotoxic screening of new complexes of cerium, lanthanum and neodymium with warfarin and coumachlor sodium salts, Eur. J. Med. Chem. 34 (1999), 63–68.
  • [11] I. Manolov, I. Kostova, T. Netzeva, S. Konstantinov, and M. Karaivanova, Cytotoxic activity of cerium complexes with coumarin derivatives. Molecular modeling of the ligands, Arch. Pharm. Pharm. Med. Chem. 333 (2000), 93–98.
  • [12] I. Kostova, I. Manolov, and M. Karaivanova, Synthesis, physicochemical characterization, and cytotoxic screening of new zirconium complexes with coumarin derivatives, Archiv. Pharm. Pharm. Med. Chem. 334 (2001), 157–162.
  • [13] V. D. Karaivanova, I. Manolov, M. L. Minassyan, N. D. Danchev, and S. M. Samurova, Metal complexes of warfarin sodium, Pharmazie. 49 (1994), 856–857.
  • [14] E. Budzisz, B. K. Keppler, G. Giester, M. Wozniczka, A. Kufelnicki, and B. Nawrot, Synthesis, crystal structure and cytotoxicity of novel palladium (II) complex with coumarin derived ligand, Eur. J. Inorg. Chem. 2004 (2004), 4412–4419.
  • [15] E. Budzisz, U. Krajewska, and M. Rozalska, Cytotoxic and proapoptotic effects of new Pd(II) and Pt(II)-complexes with 3-ethanimidoyl-2-methoxy-2H-1,2-benzoxaphosphinin-4-ol-2-oxide, Pol. J. Pharmacol. 56 (2004), 473–478.
  • [16] E. Budzisz and S. Pastuszko, Reaction of dimethyl 2-methyl- and dimethyl 2 phenyl-4-oxo4H-chromen-3-yl-phosphonate with amines, Tetrahedron 55 (1999), 4815–4824.
  • [17] H. Kolancılar, C. Karapire, U. Oyman, and S. ¨ ˙I¸cli, Fluorescence emission and photooxidation studies with 5,6- and 6,7-benzocoumarins and a 5,6-benzochromone under direct and concentrated sun light, J. Photochem. Photobiol A: Chem. 153 (2002), 173–184.
  • [18] E. Budzisz, M. Malecka, M. Wozniczka, and A. Kufelnicki, Crystal Structure, protolytic properties and alkylating activity of 5-λ3-(1-amino-ethylidene)-2-methoxy-2-oxo-2,3-dihydro-2 benzo[e][1,2]oxaphosphinin-4-one, J. Mol. Struct. 753 (2005), 113–118.
  • [19] C. O˘gretir, C. Yenikaya, and H. Berber, A quantum chemical study on structure of 1,2- bis(diphenylphosphinoyl)ethane and phenol cocrystal, J. Mol. Struct.: THEOCHEM 686 (2004), 153–157.
  • [20] C. O˘gretir, C. Yenikaya, and H. Berber, A quantum chemical study on structure of 1,2- Bis(diphenylphosphinoyl)ethane and hydroquinone cocrystal, J. Mol. Struct.: THEOCHEM 725 (2005), 207–214.
  • [21] CAChe WorkSystem Pro, Version 6.1.12, FCS Inc., 15244 NW Greenbrier Parkway, Beaverton, Oregon, 2004.
  • [22] M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery Jr., T. Vreven, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B.Johnson, W. Chen, M. W. Wong, C. Gonzalez, and J. A. Pople, Gaussian 03, Gaussian, Inc., Pittsburgh, PA, 2003.
  • [23] J. B. Foreseman and Æ. Frisch, Exploring chemistry with electronic structure methods, 2. ed., Gaussian Inc., Pitssburgh 1996.
  • [24] I. Georgieva, T. Mihaylov, G. Bauer, and N. Trendafilova, Effect of the nature of mendiaxon − − X+ interactions (X+ = Na+, Cu+, H+) and the hydrogen bonding on the v(C = O) behavior: theoretical and spectroscopic study, Chemical Physics 300 (2004), 119–131.
  • [25] D. D. Perrin, Dissociation constants of organic bases in aqueous solution, first supplement, Pergamon, Oxford, 1972.

Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone

Year 2010, Volume: 7 Issue: 1, 1 - 16, 01.02.2010

Abstract

3-(1-Amino-etilidin)-2metoksi-2-okzo-2,3 -dihidro-2λ
5
-benzo[e][1,2]okzafosfonin-4-
on olası tautomerik formları Hartree-Fock (HF) ve Yo˘gunluk Fonksiyonel teorisi (DFT)
metodları kullanılarak ara¸stırıldı. Hesaplanan ba˘g uzunlukları ve ba˘g a¸cıları deneysel
verilerle kıyaslandı. Tautomerlerin yapıları, enerjileri ve relatif kararlıkları kar¸sıla¸stırıldı
ve analiz edildi. Amin-keto ve imin-enol tautomerizmi, iki form arasındaki reaktivite
farkını oranlamak i¸cin dikkate alındı. Keto formunun enol formundan daha kararlı oldu˘gu
g¨ozlendi. Asitlik sabiti ve fizikokimyasal parametreler yarı-deneysel metodlarla hesaplandı.

References

  • [1] A. M. Magill and B. F. Yates, An assessment of theoretical protocols for calculation of the pKa values of the prototype imidazolium cation, Aust. J. Chem. 57 (2004), 1205–1210.
  • [2] K. J. Cavell, A. M. Magill, and B. F. Yates, Basicity of nucleophilic carbenes in aqueous and nonaqueous solvents-theoretical predictions, J. Am. Chem. Soc. 126 (2004), 8717–8274.
  • [3] Y. Fu, L. Liu, H.-Z. Yu, Y. Wang, and Q.-X. Guo, Quantum-chemical predictions of absolute standard redox potentials of diverse organic molecules and free radicals in acetonitrile, J. Am. Chem. Soc. 127 (2005), 7227–7234.
  • [4] A. M. Toth, M. D. Liptak, D. L. Philips, and G. C. Shields, Accurate relative pKa calculations for carboxylic acids using complete basis set and Gaussian-n models combined with continuum solvation methods, J. Chem. Phys. 114 (2001), 4595–4606.
  • [5] C. O. Silva, E. C. da Silva, and M. A. C. Nascimento, Ab initio calculations of absolute pKa values in aqueous solution II. Aliphatic alcohols, thiols, and halogenated carboxylic acids, J. Phys. Chem. A 104 (2000), 2402–2409.
  • [6] E. Budzisz, Synthesis, reactions and biological activity of phosphorus-containing derivatives of chromone and coumarin, Phosphor Sulfur Silicon 179 (2004), 2131–2147.
  • [7] E. Budzisz, W la´sciwo´sci biologiczne fosfonianowych pochodnych chromonu i kumaryny, Farmacja Polska 59 (2003), 677–683.
  • [8] E. Budzisz, J. Graczyk-Wojciechowska, R. Zieba, and B. Nawrot, A new series of 2-substituted 3-phosphonic derivatives of chromone. Part II. Synthesis, in vitro alkylating and in vivo antitumor activity, New J. Chem 26 (2002), 1799–1804.
  • [9] R. Deng, J. Wu, and L. Long, Lanthanide complexes of bis(4-hydroxy-3-coumarinyl) acetic acid and their anticoagulant action, Bul. Soc. Chim. Belg. 101 (1992), 439–443.
  • [10] I. Kostova, I. Manolov, S. Konstantinov, and M. Karaivanova, Synthesis, physicochemical characterisation and cytotoxic screening of new complexes of cerium, lanthanum and neodymium with warfarin and coumachlor sodium salts, Eur. J. Med. Chem. 34 (1999), 63–68.
  • [11] I. Manolov, I. Kostova, T. Netzeva, S. Konstantinov, and M. Karaivanova, Cytotoxic activity of cerium complexes with coumarin derivatives. Molecular modeling of the ligands, Arch. Pharm. Pharm. Med. Chem. 333 (2000), 93–98.
  • [12] I. Kostova, I. Manolov, and M. Karaivanova, Synthesis, physicochemical characterization, and cytotoxic screening of new zirconium complexes with coumarin derivatives, Archiv. Pharm. Pharm. Med. Chem. 334 (2001), 157–162.
  • [13] V. D. Karaivanova, I. Manolov, M. L. Minassyan, N. D. Danchev, and S. M. Samurova, Metal complexes of warfarin sodium, Pharmazie. 49 (1994), 856–857.
  • [14] E. Budzisz, B. K. Keppler, G. Giester, M. Wozniczka, A. Kufelnicki, and B. Nawrot, Synthesis, crystal structure and cytotoxicity of novel palladium (II) complex with coumarin derived ligand, Eur. J. Inorg. Chem. 2004 (2004), 4412–4419.
  • [15] E. Budzisz, U. Krajewska, and M. Rozalska, Cytotoxic and proapoptotic effects of new Pd(II) and Pt(II)-complexes with 3-ethanimidoyl-2-methoxy-2H-1,2-benzoxaphosphinin-4-ol-2-oxide, Pol. J. Pharmacol. 56 (2004), 473–478.
  • [16] E. Budzisz and S. Pastuszko, Reaction of dimethyl 2-methyl- and dimethyl 2 phenyl-4-oxo4H-chromen-3-yl-phosphonate with amines, Tetrahedron 55 (1999), 4815–4824.
  • [17] H. Kolancılar, C. Karapire, U. Oyman, and S. ¨ ˙I¸cli, Fluorescence emission and photooxidation studies with 5,6- and 6,7-benzocoumarins and a 5,6-benzochromone under direct and concentrated sun light, J. Photochem. Photobiol A: Chem. 153 (2002), 173–184.
  • [18] E. Budzisz, M. Malecka, M. Wozniczka, and A. Kufelnicki, Crystal Structure, protolytic properties and alkylating activity of 5-λ3-(1-amino-ethylidene)-2-methoxy-2-oxo-2,3-dihydro-2 benzo[e][1,2]oxaphosphinin-4-one, J. Mol. Struct. 753 (2005), 113–118.
  • [19] C. O˘gretir, C. Yenikaya, and H. Berber, A quantum chemical study on structure of 1,2- bis(diphenylphosphinoyl)ethane and phenol cocrystal, J. Mol. Struct.: THEOCHEM 686 (2004), 153–157.
  • [20] C. O˘gretir, C. Yenikaya, and H. Berber, A quantum chemical study on structure of 1,2- Bis(diphenylphosphinoyl)ethane and hydroquinone cocrystal, J. Mol. Struct.: THEOCHEM 725 (2005), 207–214.
  • [21] CAChe WorkSystem Pro, Version 6.1.12, FCS Inc., 15244 NW Greenbrier Parkway, Beaverton, Oregon, 2004.
  • [22] M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery Jr., T. Vreven, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B.Johnson, W. Chen, M. W. Wong, C. Gonzalez, and J. A. Pople, Gaussian 03, Gaussian, Inc., Pittsburgh, PA, 2003.
  • [23] J. B. Foreseman and Æ. Frisch, Exploring chemistry with electronic structure methods, 2. ed., Gaussian Inc., Pitssburgh 1996.
  • [24] I. Georgieva, T. Mihaylov, G. Bauer, and N. Trendafilova, Effect of the nature of mendiaxon − − X+ interactions (X+ = Na+, Cu+, H+) and the hydrogen bonding on the v(C = O) behavior: theoretical and spectroscopic study, Chemical Physics 300 (2004), 119–131.
  • [25] D. D. Perrin, Dissociation constants of organic bases in aqueous solution, first supplement, Pergamon, Oxford, 1972.
There are 25 citations in total.

Details

Primary Language English
Subjects Engineering
Journal Section Articles
Authors

Yadigar Gülseven Sıdır This is me

İsa Sıdır This is me

Erol Taşal

Cemil Öğretir This is me

Publication Date February 1, 2010
Published in Issue Year 2010 Volume: 7 Issue: 1

Cite

APA Sıdır, Y. G., Sıdır, İ., Taşal, E., Öğretir, C. (2010). Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone. Cankaya University Journal of Science and Engineering, 7(1), 1-16.
AMA Sıdır YG, Sıdır İ, Taşal E, Öğretir C. Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone. CUJSE. February 2010;7(1):1-16.
Chicago Sıdır, Yadigar Gülseven, İsa Sıdır, Erol Taşal, and Cemil Öğretir. “Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone”. Cankaya University Journal of Science and Engineering 7, no. 1 (February 2010): 1-16.
EndNote Sıdır YG, Sıdır İ, Taşal E, Öğretir C (February 1, 2010) Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone. Cankaya University Journal of Science and Engineering 7 1 1–16.
IEEE Y. G. Sıdır, İ. Sıdır, E. Taşal, and C. Öğretir, “Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone”, CUJSE, vol. 7, no. 1, pp. 1–16, 2010.
ISNAD Sıdır, Yadigar Gülseven et al. “Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone”. Cankaya University Journal of Science and Engineering 7/1 (February 2010), 1-16.
JAMA Sıdır YG, Sıdır İ, Taşal E, Öğretir C. Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone. CUJSE. 2010;7:1–16.
MLA Sıdır, Yadigar Gülseven et al. “Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone”. Cankaya University Journal of Science and Engineering, vol. 7, no. 1, 2010, pp. 1-16.
Vancouver Sıdır YG, Sıdır İ, Taşal E, Öğretir C. Theoretical Investigations on Thermo-Dynamic Properties and Molecular Structure of the Phosphorus-Containing Derivative of Chromone. CUJSE. 2010;7(1):1-16.