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Next Generation Breeding in Potato

Year 2017, Volume: 3 Issue: 2, 1 - 33, 31.01.2017

Abstract

Potato is the world's number one non-grain commodity and ranks at fourth position after maize, rice and wheat. As
a species, potato is very docile to cell culture, it also contains an extended history of applications in the field of biotechnology
for the improvement of crops. The genomic insurgency from the recent past has significantly enhanced
the overall knowhow of the genetic structure of all the crops. Crop genome sequences has totally reformed our view
and understanding for genome association and genome development. Increased knowledge in markers along with the
advanced phenotyping, genotyping by sequencing, genomewide association studies added a new way for determining
marker-trait associations that can withstand genome based breeding programs. Accessibility of sequencing of genomic
data has permitted editing of genome (localized mutagenesis), for obtaining sequences of gene that is anticipated by the
breeders. To develop some genetic maps, markers application and genomics in the field of potato breeding these genetic
characteristics have also assigned the tasks to the breeders. Many strategies are formulated to describe the potato loci,
(contender) genes and alleles, and association of genotype with the phenotype are also stated. This review demonstrates
how next generation phenotyping, genome-wide association studies and genome editing tools can be used to modify
tools to genomics for the need of potato breeders to transform potato improvement.

References

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Year 2017, Volume: 3 Issue: 2, 1 - 33, 31.01.2017

Abstract

References

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Efficient targeted multiallelic mutagenesis in tetraploid potato (Solanum tuberosum) by transient CRISPR-Cas9 expression in protoplasts. Plant Cell Reports, 1-12. Anithakumari AM, Dolstra O, Vosman B, Visser RGF, and Van der Linden CG (2011). In vitro screening and QTL analysis for drought tolerance in diploid potato. Euphytica, 181(3):357-369. Araki M and Ishii T (2015). Towards social acceptance of plant breeding by genome editing. Trends in plant science, 20(3): 145-149. Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, Marjoram P and Nordborg M (2005). Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLOS Genetics, 1: e60. Araus JL and Cairns JE (2014). Field high-throughput phenotyping: the new crop breeding frontier. Trends in Plant Science, 19(1):52-61. 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The genetic architecture of maize flowering time. Science 325:714-18. Bus A, Hecht J, Huettel B, Reinhardt R,and Stich B (2012). High-throughput polymorphism detection and genotyping in Brassica napus using nextgeneration RAD sequencing. BMC Genomics 13:281. doi:10.1186/1471-2164-13-281. Butler NM and Douches DS (2016). Sequence-Specific Nucleases for Genetic Improvement of Potato. American Journal of Potato Research, 1-18. Butler NM, Atkins PA, Voytas DF and Douches DS (2015). Generation and inheritance of targeted mutations in potato (Solanum tuberosum L.) using the CRISPR/Cas system. PloS one, 10(12): e0144591. Bylesjo M, Segura V, Soolanayakanahally RY, Rae AM, Trygg J, Gustafsson P, Jansson S, Street NR (2008). LAMINA: a tool for rapid quantification of leaf size and shape parameters. BMC Plant Biol 8:82. Caldwell KS, Russell J, Langridge P and Powell W (2006). “Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare,” Genetics, vol. 172, no. 1, pp. 557-567. Calus MPL, Meuwissen THE, de Roos APW, and Veerkamp RF (2008). Accuracy of genomic selection using different methods to define haplotypes. Genetics 178:553-561. doi:10.1534/ genetics.107.080838. Chao S, Zhang W, Dubcovsky J and Sorrells M (2007). “Evaluatio of genetic diversity and genomewide linkage disequilibriumamong U.S. wheat (Triticum aestivum L.) germplas representing different market classes,” Crop Science, vol. 47, no. 3, pp. 1018-1030. Chapman JM, Cooper JD, Todd JA, and Clayton DG (2003). “Detecting disease associations due to linkage disequilibrium using haplotype tags: a class of tests and the determinants of statistical power,” Human Heredity, vol. 56, no. 1-3, pp. 18-31. Clark RT, Famoso AN, Zhao K, Shaff JE, Craft EJ, Bustamante CD, McCouch SR, Aneshansley DJ and Kochian LV (2012). Highthroughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant Cell Environ. doi. doi:10.1111/j.1365-3040.2012.02587x. Clark RT, MacCurdy RB, Jung JK, Shaff JE, McCouch SR, Aneshansley DJ and Kochian LV (2011). Three-dimensional root phenotyping with a novel imaging and software platform. Plant Physiol 156: 455–465. Clasen BM, Stoddard TJ, Luo S, Demorest ZL, Li J, Cedrone F and Coffman A (2016). Improving cold storage and processing traits in potato through targeted gene knockout. Plant biotechnology journal, 14(1): 169-176. Cobb JN, DeClerck G,Greenberg A, Clark R and McCouch S (2013). Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype– phenotype relationships and its relevance to crop improvement. Theoretical and Applied Genetics, 126(4): 867-887. 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Mehmet Emin Calıskan

Publication Date January 31, 2017
Published in Issue Year 2017 Volume: 3 Issue: 2

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APA Calıskan, M. E. (2017). Next Generation Breeding in Potato. Ekin Journal of Crop Breeding and Genetics, 3(2), 1-33.
AMA Calıskan ME. Next Generation Breeding in Potato. Ekin Journal. January 2017;3(2):1-33.
Chicago Calıskan, Mehmet Emin. “Next Generation Breeding in Potato”. Ekin Journal of Crop Breeding and Genetics 3, no. 2 (January 2017): 1-33.
EndNote Calıskan ME (January 1, 2017) Next Generation Breeding in Potato. Ekin Journal of Crop Breeding and Genetics 3 2 1–33.
IEEE M. E. Calıskan, “Next Generation Breeding in Potato”, Ekin Journal, vol. 3, no. 2, pp. 1–33, 2017.
ISNAD Calıskan, Mehmet Emin. “Next Generation Breeding in Potato”. Ekin Journal of Crop Breeding and Genetics 3/2 (January 2017), 1-33.
JAMA Calıskan ME. Next Generation Breeding in Potato. Ekin Journal. 2017;3:1–33.
MLA Calıskan, Mehmet Emin. “Next Generation Breeding in Potato”. Ekin Journal of Crop Breeding and Genetics, vol. 3, no. 2, 2017, pp. 1-33.
Vancouver Calıskan ME. Next Generation Breeding in Potato. Ekin Journal. 2017;3(2):1-33.