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SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL

Year 2022, Volume: 10 Issue: 2, 59 - 74, 23.08.2022
https://doi.org/10.20290/estubtdb.982660

Abstract

In this study, the Schiff base 4-(((1H-imidazol-2-yl)methylene)amino)phenol (3) has been synthesized and structure of the compound was characterized by elemental analysis, FTIR, 1H NMR, 13C NMR and UV-Vis spectroscopic techniques. Correlation of theoretical and experimental spectroscopy data was examined. The acidity constant was calculated by using PM6 method in MOPAC2012 program at gas and liquid phases at 25 °C. Basically in calculations, it was calculated by the DFT method in Gaussian09 program at B3LYP/6-311+g(d,p) levels. After deciding the stable conformation of the synthesized molecule, HOMO, LUMO, MEP and SAS theory were calculated using the B3LYP / 6-311+g(d, p) level. The low HOMO-LUMO values of the resulting compound indicate that the reaction activity will be easier and can easily bind to metal atoms or a receptor in future studies.

Project Number

Anadolu University 1309F20 BAP project.

Thanks

We would like to thank our teacher Halil Berber for all his help.

References

  • [1] Yamada S. Advancement in stereochemical aspects of Schiff base metal complexes. Coordination Chemistry Reviews 1999; 190–192; 537–555.
  • [2] Archer RD, Wang B. Synthesis and Characterization of the Thermally Stable Copolymer of Tetrakis(salicylaldehydato-O.O’)zirconium(IV) and 3.3’-Diaminobenzidine. Inorg Chem, 1990; 29, 39-43.
  • [3] Issa RM, Khedr AM and Rizk H. 1H NMR IR and UV/VIS Spectroscopic Studies of Some Schiff Bases Derived From 2-Aminobenzothiazole and 2-Amino-3-hydroxypyridine. Journal of the Chinese Chemical Society, 2008; 55, 875-884.
  • [4] Blagus A, Cinčić D, Frisčić T, Kaitner B, Stilinović V. Schiff bases derived from hydroxyaryl aldehydes: molecular and crystal structure. tautomerism. quinoid effect. coordination compounds. Maced J Chem and Chem Eng, 2010; 29(2), 117-138.
  • [5] Aytekin TM, Elmalı D, Berber H, Şişman F. Synthesis, characterization, crystal structure and theoretical studies of n-(2,4-dichlorobenzylidene)-3-methylbenzenamine, Anadolu University Journal of Science and Technology A- Applied Sciences and Engineering 2016; 17(2), 357 – 376.
  • [6] Sridhara SK, Saravanana M, Ramesh A. Synthesis and antibacterial screening of hydrazones. Schiff and Mannich bases of isatin derivatives. Eur J Med Chem, 200; 36, 615–625.
  • [7] Govındaraj V. Ramanathan S. Synthesis. spectral characterisation. electrochemical. and fluorescence studies of biologically active novel Schiff_ base complexes derived from E-4-(2-hydroxy-3- methoxybenzlideneamino)-N-(pyrimidin-2-yl)benzenesulfonamide. Turk J Chem, 2014; 38, 521-530.
  • [8] Mladenova R, Ignatova M, Manolova N, Petrova T, Rashkov I. Preparation characterization and biological activity of Schiff base compounds derived from 8-hydroxyquinoline-2-carboxaldehyde and Jeffamines ED. European Polymer Journal, 2002; 38; 989–999.
  • [9] Rousso I. Friedman N. Sheves M. Ottolenghi M. PKa of the Protonated Schiff Base and Aspartic 85 in the Bacteriorhodopsin Binding Site Is Controlled by a Specific Geometry between the Two Residuest. Biochemistry, 1995; 34, 37, 12059-12065.
  • [10] Pradhan A and Kumar A. A Review: An Overview on Synthesis of Some Schiff bases and there Metal Complexes with Anti-Microbial Activity. Chemical and Process Engineering Research, 2015; 35; 2225.
  • [11] Rousso I, Friedman N, Sheves M, Ottolenghi M. pKa of the Protonated Schiff Base and Aspartic 85 in the Bacteriorhodopsin Binding Site Is Controlled by a Specific Geometry between the Two Residuest. Biochemistry, 1995; 34; 12059- 12065.
  • [12] Zhang X, Bı C, Fan Y, Cuı Q, Chen D, Xıao Y and Dou QP. Induction of Tumor Cell Apoptosis By Taurine Schiff Base Copper Complex is Associated the with İnhibition of Proteasomal Activity. Int J Mol Med, 2008; 5, 677–682.
  • [13] Cinarli A, Gürbüz D, Tavman A and Birteksöz AS. Synthesis Spectral Characterizations and Antimicrobial Activity of Some Schiff Bases of 4-Chloro-2-Aminophenol. Bull Chem Soc Ethiop, 2011; 25(3), 407-417.
  • [14] Sridhar G, Bilal I, Easwaramoorth D, Ran S, Kumar B and Manohar CS. Synthesis Characterization and Antimicrobial Activities of Copper Nickel Cobalt Chromium Complexes Derived from (Z)-4-Fluoro-N-(2.7-dimethylhept-6-enylidene) benzenamine. J. Braz. Chem. Soc., 2017; 28(5) 756-767.
  • [15] Demir HÖ, Kaya I and Saçak M. Synthesis and characterization of a pyridine containing Schiff base oligomer Russian Chemical Bulletin. International Edition, October, 2006; 55(10), 1852-1855.
  • [16] Radi S, Tighadouini S, Feron O, et al. One pot synthesis antitumor antibacterial and antifungal activities of some schiff base heterocycles . Int J Pharm, 2015; 5(1); 39-45.
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  • [19] Gaussian 09. Revision B.01. Frisch MJ, Trucks GW, Schlegel HB et al. Gaussian. Inc. Wallingford CT. 2009.
  • [20] Dennington RD. Keith TA. Millam JM. GaussView 5.0.8. Gaussian Inc. Wallingford CT 2008.
  • [21] Berber H, Uysal ÜD. Bazı diimin türevi schıff bazlarının sentezi, geometrileri ve tautomer yapılarının kararlılıklarının dft yöntemi ile hesaplanması, Anadolu University Journal of Science and Technology B- Theoretical Science, 2015; 3(2) 105 – 126.
  • [22] Vidal Salgado LE, Vargas Hernández C. Spectrophotometric Determination of the pKa. Isosbestic Point and Equation of Absorbance vs. pH for a Universal pH Indicator. American Journal of Analytical Chemistry, 2014; 5, 1290-1301.
  • [23] Casasnovas R, Ortega-Castro J, Frau J, et al. Theoretical pKa Calculations with Continuum Model Solvents. Alternative Protocols to Thermodynamic Cycles. International Journal of Quantum Chemistry, 2014; 114, 1350–1363.
  • [24] Pliego JR, Riveros JM. Theoretical Calculation of pKa Using the Cluster-Continuum Model. J. Phys. Chem. A 2002; 106, 7434-7439.
  • [25] Hohenberg P. Kohn W. Inhomogeneous Electron Gas. Phys. Rev.1964; B864,136.
  • [26] Thapa B and Schlegel HB. Density Functional Theory Calculation of pKa’s of Thiols in Aqueous Solution Using Explicit Water Molecules and the Polarizable Continuum Model. J. Phys. Chem. A 2016; 120, 5726−5735.
  • [27] Perez-Jorda JM, Becke AD. A density-functional study of van der Waals forces: rare gas diatomics. Chemical Physics Letters 1995; 233, 134-137.
  • [28] Stratmann RE, Scuseria GE, Frisch MJ. Achieving linear scaling in exchange-correlation density functional quadratures. Chemical Physics Letters 1996; 257, 213-223.
  • [29] Hwang S and Chung DS. Calculation of the Solvation Free Energy of the Proton in Methanol. Bull. Korean Chem. Soc. 2005; 26 (4), 589-593.
  • [30] Tawa G J, Topol IA, Burt SK et al. Calculation of the aqueous solvation free energy of the proton Citation: The Journal of Chemical Physics 1998;109, 4852.
  • [31] Yıldırım A, Kaya Y, Göker M, Screening of simple carbohydrates as a renewable organocatalyst for the efficient construction of 1,3-benzoxazine scaffold. Carbohydrate Research, 2021, 510, 108458.
  • [32] Türkoğlu G, Berber H, Dal H, Öğretir C. Synthesis, characterization, tautomerism and theoretical study of some new Schiff base derivatives, Spectrochimica Acta Part A 79, 2011; 1573–1583
  • [33] Bruice TC, Schmir GL, Imidazole Catalysis I The Catalysis of the Hydrolysis of Phenyl Acetates by Imidazole, J. Am. Chem. Soc., 1957; 79 (7), 1663–1667
  • [34] Bahgat K, Fraihat S. Normal coordinate analysis, molecular structure, vibrational, electronic spectra and NMR investigation of 4-Amino-3-phenyl-1H-1,2,4-triazole-5(4H)thione by ab initio HF and DFT method. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2015; 135, 1145-1155.
  • [35] Bouabdallah I, Rahal M, Harit T, et al. Hartree-Fock and density functional theory studies on tautomerism of 5,5-diisopropyl3,3-bipyrazole in gas phase and solution. Chemical Physics Letters, 2013; 588, 208-21

SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL

Year 2022, Volume: 10 Issue: 2, 59 - 74, 23.08.2022
https://doi.org/10.20290/estubtdb.982660

Abstract

Bu çalışmada, Schiff bazı 4-(((1H-imidazol-2-il)metilen)amino)fenol (3), sentezlenmiş ve bileşiğin yapısı elementel analiz, FTIR, 1H NMR, 13C NMR ve UV-Vis spektroskopik tekniklerle karakterize edilmiştir. Teorik ve deneysel spektroskopi verilerinin korelasyonuna bakılmıştır. Asitlik sabiti MOPAC2012 programında PM6 yöntemi ve Gaussian09 programında DFT yöntemi kullanılarak B3LYP/6-311+G(d,p) seviyelerinde gaz ve sıvı fazlarında 25 °C'de hesaplanmıştır. Sentezlenen molekülün kararlı konformasyonuna karar verildikten sonra HOMO, LUMO, MEP ve SAS teorisi B3LYP/6-311+G(d,p) seviyesi kullanılarak hesaplanmıştır.

Project Number

Anadolu University 1309F20 BAP project.

References

  • [1] Yamada S. Advancement in stereochemical aspects of Schiff base metal complexes. Coordination Chemistry Reviews 1999; 190–192; 537–555.
  • [2] Archer RD, Wang B. Synthesis and Characterization of the Thermally Stable Copolymer of Tetrakis(salicylaldehydato-O.O’)zirconium(IV) and 3.3’-Diaminobenzidine. Inorg Chem, 1990; 29, 39-43.
  • [3] Issa RM, Khedr AM and Rizk H. 1H NMR IR and UV/VIS Spectroscopic Studies of Some Schiff Bases Derived From 2-Aminobenzothiazole and 2-Amino-3-hydroxypyridine. Journal of the Chinese Chemical Society, 2008; 55, 875-884.
  • [4] Blagus A, Cinčić D, Frisčić T, Kaitner B, Stilinović V. Schiff bases derived from hydroxyaryl aldehydes: molecular and crystal structure. tautomerism. quinoid effect. coordination compounds. Maced J Chem and Chem Eng, 2010; 29(2), 117-138.
  • [5] Aytekin TM, Elmalı D, Berber H, Şişman F. Synthesis, characterization, crystal structure and theoretical studies of n-(2,4-dichlorobenzylidene)-3-methylbenzenamine, Anadolu University Journal of Science and Technology A- Applied Sciences and Engineering 2016; 17(2), 357 – 376.
  • [6] Sridhara SK, Saravanana M, Ramesh A. Synthesis and antibacterial screening of hydrazones. Schiff and Mannich bases of isatin derivatives. Eur J Med Chem, 200; 36, 615–625.
  • [7] Govındaraj V. Ramanathan S. Synthesis. spectral characterisation. electrochemical. and fluorescence studies of biologically active novel Schiff_ base complexes derived from E-4-(2-hydroxy-3- methoxybenzlideneamino)-N-(pyrimidin-2-yl)benzenesulfonamide. Turk J Chem, 2014; 38, 521-530.
  • [8] Mladenova R, Ignatova M, Manolova N, Petrova T, Rashkov I. Preparation characterization and biological activity of Schiff base compounds derived from 8-hydroxyquinoline-2-carboxaldehyde and Jeffamines ED. European Polymer Journal, 2002; 38; 989–999.
  • [9] Rousso I. Friedman N. Sheves M. Ottolenghi M. PKa of the Protonated Schiff Base and Aspartic 85 in the Bacteriorhodopsin Binding Site Is Controlled by a Specific Geometry between the Two Residuest. Biochemistry, 1995; 34, 37, 12059-12065.
  • [10] Pradhan A and Kumar A. A Review: An Overview on Synthesis of Some Schiff bases and there Metal Complexes with Anti-Microbial Activity. Chemical and Process Engineering Research, 2015; 35; 2225.
  • [11] Rousso I, Friedman N, Sheves M, Ottolenghi M. pKa of the Protonated Schiff Base and Aspartic 85 in the Bacteriorhodopsin Binding Site Is Controlled by a Specific Geometry between the Two Residuest. Biochemistry, 1995; 34; 12059- 12065.
  • [12] Zhang X, Bı C, Fan Y, Cuı Q, Chen D, Xıao Y and Dou QP. Induction of Tumor Cell Apoptosis By Taurine Schiff Base Copper Complex is Associated the with İnhibition of Proteasomal Activity. Int J Mol Med, 2008; 5, 677–682.
  • [13] Cinarli A, Gürbüz D, Tavman A and Birteksöz AS. Synthesis Spectral Characterizations and Antimicrobial Activity of Some Schiff Bases of 4-Chloro-2-Aminophenol. Bull Chem Soc Ethiop, 2011; 25(3), 407-417.
  • [14] Sridhar G, Bilal I, Easwaramoorth D, Ran S, Kumar B and Manohar CS. Synthesis Characterization and Antimicrobial Activities of Copper Nickel Cobalt Chromium Complexes Derived from (Z)-4-Fluoro-N-(2.7-dimethylhept-6-enylidene) benzenamine. J. Braz. Chem. Soc., 2017; 28(5) 756-767.
  • [15] Demir HÖ, Kaya I and Saçak M. Synthesis and characterization of a pyridine containing Schiff base oligomer Russian Chemical Bulletin. International Edition, October, 2006; 55(10), 1852-1855.
  • [16] Radi S, Tighadouini S, Feron O, et al. One pot synthesis antitumor antibacterial and antifungal activities of some schiff base heterocycles . Int J Pharm, 2015; 5(1); 39-45.
  • [17] CS ChemOffice Pro for Microsoft Windows.
  • [18] ChemBioDraw Ultra 14 Individual ASL SN Win. Download Individual Two Year Term English Windows. 2014.
  • [19] Gaussian 09. Revision B.01. Frisch MJ, Trucks GW, Schlegel HB et al. Gaussian. Inc. Wallingford CT. 2009.
  • [20] Dennington RD. Keith TA. Millam JM. GaussView 5.0.8. Gaussian Inc. Wallingford CT 2008.
  • [21] Berber H, Uysal ÜD. Bazı diimin türevi schıff bazlarının sentezi, geometrileri ve tautomer yapılarının kararlılıklarının dft yöntemi ile hesaplanması, Anadolu University Journal of Science and Technology B- Theoretical Science, 2015; 3(2) 105 – 126.
  • [22] Vidal Salgado LE, Vargas Hernández C. Spectrophotometric Determination of the pKa. Isosbestic Point and Equation of Absorbance vs. pH for a Universal pH Indicator. American Journal of Analytical Chemistry, 2014; 5, 1290-1301.
  • [23] Casasnovas R, Ortega-Castro J, Frau J, et al. Theoretical pKa Calculations with Continuum Model Solvents. Alternative Protocols to Thermodynamic Cycles. International Journal of Quantum Chemistry, 2014; 114, 1350–1363.
  • [24] Pliego JR, Riveros JM. Theoretical Calculation of pKa Using the Cluster-Continuum Model. J. Phys. Chem. A 2002; 106, 7434-7439.
  • [25] Hohenberg P. Kohn W. Inhomogeneous Electron Gas. Phys. Rev.1964; B864,136.
  • [26] Thapa B and Schlegel HB. Density Functional Theory Calculation of pKa’s of Thiols in Aqueous Solution Using Explicit Water Molecules and the Polarizable Continuum Model. J. Phys. Chem. A 2016; 120, 5726−5735.
  • [27] Perez-Jorda JM, Becke AD. A density-functional study of van der Waals forces: rare gas diatomics. Chemical Physics Letters 1995; 233, 134-137.
  • [28] Stratmann RE, Scuseria GE, Frisch MJ. Achieving linear scaling in exchange-correlation density functional quadratures. Chemical Physics Letters 1996; 257, 213-223.
  • [29] Hwang S and Chung DS. Calculation of the Solvation Free Energy of the Proton in Methanol. Bull. Korean Chem. Soc. 2005; 26 (4), 589-593.
  • [30] Tawa G J, Topol IA, Burt SK et al. Calculation of the aqueous solvation free energy of the proton Citation: The Journal of Chemical Physics 1998;109, 4852.
  • [31] Yıldırım A, Kaya Y, Göker M, Screening of simple carbohydrates as a renewable organocatalyst for the efficient construction of 1,3-benzoxazine scaffold. Carbohydrate Research, 2021, 510, 108458.
  • [32] Türkoğlu G, Berber H, Dal H, Öğretir C. Synthesis, characterization, tautomerism and theoretical study of some new Schiff base derivatives, Spectrochimica Acta Part A 79, 2011; 1573–1583
  • [33] Bruice TC, Schmir GL, Imidazole Catalysis I The Catalysis of the Hydrolysis of Phenyl Acetates by Imidazole, J. Am. Chem. Soc., 1957; 79 (7), 1663–1667
  • [34] Bahgat K, Fraihat S. Normal coordinate analysis, molecular structure, vibrational, electronic spectra and NMR investigation of 4-Amino-3-phenyl-1H-1,2,4-triazole-5(4H)thione by ab initio HF and DFT method. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2015; 135, 1145-1155.
  • [35] Bouabdallah I, Rahal M, Harit T, et al. Hartree-Fock and density functional theory studies on tautomerism of 5,5-diisopropyl3,3-bipyrazole in gas phase and solution. Chemical Physics Letters, 2013; 588, 208-21
There are 35 citations in total.

Details

Primary Language English
Journal Section Articles
Authors

Dilek Elmalı 0000-0002-2475-9770

Kader Çıtak 0000-0002-8598-7064

Project Number Anadolu University 1309F20 BAP project.
Publication Date August 23, 2022
Published in Issue Year 2022 Volume: 10 Issue: 2

Cite

APA Elmalı, D., & Çıtak, K. (2022). SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL. Eskişehir Teknik Üniversitesi Bilim Ve Teknoloji Dergisi B - Teorik Bilimler, 10(2), 59-74. https://doi.org/10.20290/estubtdb.982660
AMA Elmalı D, Çıtak K. SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL. Eskişehir Teknik Üniversitesi Bilim ve Teknoloji Dergisi B - Teorik Bilimler. August 2022;10(2):59-74. doi:10.20290/estubtdb.982660
Chicago Elmalı, Dilek, and Kader Çıtak. “SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL”. Eskişehir Teknik Üniversitesi Bilim Ve Teknoloji Dergisi B - Teorik Bilimler 10, no. 2 (August 2022): 59-74. https://doi.org/10.20290/estubtdb.982660.
EndNote Elmalı D, Çıtak K (August 1, 2022) SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL. Eskişehir Teknik Üniversitesi Bilim ve Teknoloji Dergisi B - Teorik Bilimler 10 2 59–74.
IEEE D. Elmalı and K. Çıtak, “SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL”, Eskişehir Teknik Üniversitesi Bilim ve Teknoloji Dergisi B - Teorik Bilimler, vol. 10, no. 2, pp. 59–74, 2022, doi: 10.20290/estubtdb.982660.
ISNAD Elmalı, Dilek - Çıtak, Kader. “SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL”. Eskişehir Teknik Üniversitesi Bilim ve Teknoloji Dergisi B - Teorik Bilimler 10/2 (August 2022), 59-74. https://doi.org/10.20290/estubtdb.982660.
JAMA Elmalı D, Çıtak K. SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL. Eskişehir Teknik Üniversitesi Bilim ve Teknoloji Dergisi B - Teorik Bilimler. 2022;10:59–74.
MLA Elmalı, Dilek and Kader Çıtak. “SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL”. Eskişehir Teknik Üniversitesi Bilim Ve Teknoloji Dergisi B - Teorik Bilimler, vol. 10, no. 2, 2022, pp. 59-74, doi:10.20290/estubtdb.982660.
Vancouver Elmalı D, Çıtak K. SYNTHESIS, CHARACTERIZATION AND THEORETICAL CALCULATION OF 4-(((1H-IMIDAZOL-2-YL)METHYLENE)AMINO)PHENOL. Eskişehir Teknik Üniversitesi Bilim ve Teknoloji Dergisi B - Teorik Bilimler. 2022;10(2):59-74.