Genetic structure and molecular analysis of the species of the genus Artemisia L. (Asteraceae) distributed in Azerbaijan
Year 2024,
Volume: 11 Issue: 2, 200 - 210, 03.06.2024
Narmin Sadıgova
,
Zarifa Suleymanova
,
Javid Ojaghi
,
Sayyara İbadullayeva
,
Alamdar Mammadov
Abstract
In this study, the phylogenetic relationships and genetic structure of 10 collected genotypes of Artemisia szowitziana (Besser) Grossh and Artemisia fragrans Willd. species from different regions of Azerbaijan were investigated using RAPD primers. A total of 94 amplicons were amplified using selected RAPD primers. Among them 3 band with OPA-02 primers and 12 band with OPW-17 primers were amplified. The highest polymorphism among the investigated RAPD markers was 100, 90.91 and 90%, which has been obtained by OPW-17, OPT-19, and OPT-20 primers, respectively. However, the calculated average value of polymorphism was as high as 72.79% based on 10 different RAPD markers. The average PIC (Polymorphism Information Content) value (0.864) has indicated the rich genetic diversity among the studied samples. The cluster analyses by using Jaccard similarity index and UPGMA method classified all Artemisia L. samples into 6 major groups. Principal Component Analysis (PCA) justified 74.22% of the total variance. Based on the results obtained, it has been observed that there is a wide range of diversity in the molecular level between the population of Artemisia szowitziana (1-2 and 4-6 samples) and Artemisia fragrans (3, 5, 7 and 8, 9, 10 samples) and between population of the Artemisia species in Azerbaijan.
Supporting Institution
Ministry of Science and Education of the Republic of Azerbaijan Institute of Botany
Thanks
Thank you in advance.
References
- Alesgerova, A.N., & Ibadullayeva, S.J. (2011). Role of Artemisia species in vegetation of Azerbaijan flora. AMEA Reports, 1, 132-138.
- Al-Rawashdeh, I.M. (2011). Genetic variability in a medicinal plant Artemisia judaica using random amplified polymorphic DNA (RAPD) markers. Int. J. Agric. Biol. 13(2). 279–282
- Badr, A., Abo El-Khier, Z., Ghada, A., Hegazi, G.A., El-Kawi, A., El-Sawy, A. (2012). Genetic Variation in Seven Natural Populations of Artemisia judaica L. in South Sinai Using RAPD Markers. World Applied Sciences Journal, 18(10), 1475-1480.
- Badr, A., El-Shazly, H., Helail, N.S., & El Ghanim, W. (2012) Genetic diversity of Artemisia populations in central and north Saudi Arabia based on morphological variation and RAPD polymorphism. Plant Systematics and Evolution, 298(5), 871 886. https://doi.org/10.1007/s00606-012-0597-5
- Badr, A., Morsy, W., Abdel-Tawab, S., Shams, S., & Shehab, A. (2011). Genetic diversity in Artemisia Monosperma and Artemisia Judaica Populations in Egypt based on morphological, karyological and molecular variations. Australian Journal of Basic and Applied Sciences, 5(6), 1223-1234.
- Barney, J.N, & Di Tommase, A. (2003). The biology of Canadian weeds.118. Artemisia vulgaris L. Can J Plant Sci., 83, 205-215.
- Choo, B.K., Moon, B.C., Ji, Y., Kim, B.B., Choi, G., Yoon, T., & Kim, H.K. (2009). Development of SCAR markers for the discrimination of three species of medicinal plants, Angelica decursiva (Peucedanum decursivum), Peucedanum praeruptorum and Anthricus sylvestris, based on the internal transcribed spacer (ITS) sequence and random amplified polymorphic DNA (RAPD). Biol. Pharm. Bull., 32, 24-30.
- Hajiyev, V.C., & Malikov, R.K. (1999). On the history of the appearance of desert vegetation in Azerbaijan and the formation of Artemisia communities. Azerbaijan National Academy of Sciences Reports, Pub., 4, 186-192.
- Hayat, M.Q., Aahraf, M., Khan, M.A., Yasmin, G., Shaheen, N., & Jabeen, S. (2010). Palynological study of the genus Artemisia (Asteraceae) and its systematic implications. Pak J Bot., 42(2), 751-763
- Koloren, O., Koloren, Z., & Eker, S. (2016). Molecular phylogeny of Artemisia species based on the internal transcribed spacer (ITS) of 18S-26S rDNA in Ordu Province of Turkey. Biotechnology & Biotechnological Equipment, 30(5), 929 934. https://doi.org/10.1080/13102818.2016.1188674
- Kumar, J., Mishra, G.P., Singh, H., Srivastava, R.B., & Naik, P.K. (2011). Congruence of inter simple sequence repeat (ISSR) and random amplification of polymorphic deoxyribonucleic acid (RAPD) marker in genetic characterization of Artemisia annua in the Trans Himalayan region. Medicinal Plant Research, 23, 5568-5576.
- Lee, M.I., Doh, E.U.I., Park, C.H., Kim, Y.H.W., Kim, E.S., Ko, B.S., & Oh, S.E. (2006). Development of SCAR marker for discrimination of Artemisia princeps and A. argyi from other Artemisia Herbs. Biol. Pharm. Bull., 29(4), 629-633.
- Murray, M.G., & Thompson, W.F. (1980). Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 8(9), 4321-4325.
- Prabin, B., Bryce, A.R., Jared, C.P., Richard, C.C., & Udall, J.A. (2011). Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata). BMC Genomics, 12, 370.
- Sani, A.M., Khiabani, A. & Yaghooti, F. (2016). Chemical Composition and Antimicrobial Activity of the Essential Oil of Artemisia aucheri aerial parts. Journal of Essential Oil Bearing Plants, 19(4), 875-884. https://doi.org/10.1080/0972060X.2016.1196122
- Sayed, M., Hasan, Z., Shafie, M.B., & Shah, R.M. (2009). Analysis of random amplified polymorphic DNA (RAPD) of Artemisia capillaris (Wormwood capillary) in East Coast of Peninsular Malaysia. World Applied Sciences Journal, 6(7), 976-986.
- Shafie, M.B, Hasan, M.Z., & Shah, R.M. (2009). Study of genetic variability of Woormwood capillary (Artemisia capillary) using inter simple sequence repeat (ISSR) in Pahang Region Malaysia. Plant Omics Journal, 3, 127-134.
- Shide, V.M., Dhalwal, K., Mahadik, K.R., Joshi, S., & Patwardhan, B.K. (2007). RAPD analysis for determination of components in herbal medicine. Evid Based Complement Alternat Med., 4(1), 21–23.
- Takeda, C. (1971). Atlas of Medicinal Plants Pub. Takeda Chemical Industries Ltd. Osaka, Japan (cross reference).
- Yasmin, S., & Narasegowda, P.N. (2016). Assessment of EST-SSR and RAPD markers for genetic analysis on Artemisia species. International Journal of Current Research, 8(5), 31087-31095.
- Yasmin, S., & Narasegowda, P.N. (2016). Genetic characterization of Artemisia genotypes by using RAPD marker. International Journal of Advanced Scientific Research and Publications, 2(2), 24-28.
Genetic structure and molecular analysis of the species of the genus Artemisia L. (Asteraceae) distributed in Azerbaijan
Year 2024,
Volume: 11 Issue: 2, 200 - 210, 03.06.2024
Narmin Sadıgova
,
Zarifa Suleymanova
,
Javid Ojaghi
,
Sayyara İbadullayeva
,
Alamdar Mammadov
Abstract
In this study, the phylogenetic relationships and genetic structure of 10 collected genotypes of Artemisia szowitziana (Besser) Grossh and Artemisia fragrans Willd. species from different regions of Azerbaijan were investigated using RAPD primers. A total of 94 amplicons were amplified using selected RAPD primers. Among them 3 band with OPA-02 primers and 12 band with OPW-17 primers were amplified. The highest polymorphism among the investigated RAPD markers was 100, 90.91 and 90%, which has been obtained by OPW-17, OPT-19, and OPT-20 primers, respectively. However, the calculated average value of polymorphism was as high as 72.79% based on 10 different RAPD markers. The average PIC (Polymorphism Information Content) value (0.864) has indicated the rich genetic diversity among the studied samples. The cluster analyses by using Jaccard similarity index and UPGMA method classified all Artemisia L. samples into 6 major groups. Principal Component Analysis (PCA) justified 74.22% of the total variance. Based on the results obtained, it has been observed that there is a wide range of diversity in the molecular level between the population of Artemisia szowitziana (1-2 and 4-6 samples) and Artemisia fragrans (3, 5, 7 and 8, 9, 10 samples) and between population of the Artemisia species in Azerbaijan.
References
- Alesgerova, A.N., & Ibadullayeva, S.J. (2011). Role of Artemisia species in vegetation of Azerbaijan flora. AMEA Reports, 1, 132-138.
- Al-Rawashdeh, I.M. (2011). Genetic variability in a medicinal plant Artemisia judaica using random amplified polymorphic DNA (RAPD) markers. Int. J. Agric. Biol. 13(2). 279–282
- Badr, A., Abo El-Khier, Z., Ghada, A., Hegazi, G.A., El-Kawi, A., El-Sawy, A. (2012). Genetic Variation in Seven Natural Populations of Artemisia judaica L. in South Sinai Using RAPD Markers. World Applied Sciences Journal, 18(10), 1475-1480.
- Badr, A., El-Shazly, H., Helail, N.S., & El Ghanim, W. (2012) Genetic diversity of Artemisia populations in central and north Saudi Arabia based on morphological variation and RAPD polymorphism. Plant Systematics and Evolution, 298(5), 871 886. https://doi.org/10.1007/s00606-012-0597-5
- Badr, A., Morsy, W., Abdel-Tawab, S., Shams, S., & Shehab, A. (2011). Genetic diversity in Artemisia Monosperma and Artemisia Judaica Populations in Egypt based on morphological, karyological and molecular variations. Australian Journal of Basic and Applied Sciences, 5(6), 1223-1234.
- Barney, J.N, & Di Tommase, A. (2003). The biology of Canadian weeds.118. Artemisia vulgaris L. Can J Plant Sci., 83, 205-215.
- Choo, B.K., Moon, B.C., Ji, Y., Kim, B.B., Choi, G., Yoon, T., & Kim, H.K. (2009). Development of SCAR markers for the discrimination of three species of medicinal plants, Angelica decursiva (Peucedanum decursivum), Peucedanum praeruptorum and Anthricus sylvestris, based on the internal transcribed spacer (ITS) sequence and random amplified polymorphic DNA (RAPD). Biol. Pharm. Bull., 32, 24-30.
- Hajiyev, V.C., & Malikov, R.K. (1999). On the history of the appearance of desert vegetation in Azerbaijan and the formation of Artemisia communities. Azerbaijan National Academy of Sciences Reports, Pub., 4, 186-192.
- Hayat, M.Q., Aahraf, M., Khan, M.A., Yasmin, G., Shaheen, N., & Jabeen, S. (2010). Palynological study of the genus Artemisia (Asteraceae) and its systematic implications. Pak J Bot., 42(2), 751-763
- Koloren, O., Koloren, Z., & Eker, S. (2016). Molecular phylogeny of Artemisia species based on the internal transcribed spacer (ITS) of 18S-26S rDNA in Ordu Province of Turkey. Biotechnology & Biotechnological Equipment, 30(5), 929 934. https://doi.org/10.1080/13102818.2016.1188674
- Kumar, J., Mishra, G.P., Singh, H., Srivastava, R.B., & Naik, P.K. (2011). Congruence of inter simple sequence repeat (ISSR) and random amplification of polymorphic deoxyribonucleic acid (RAPD) marker in genetic characterization of Artemisia annua in the Trans Himalayan region. Medicinal Plant Research, 23, 5568-5576.
- Lee, M.I., Doh, E.U.I., Park, C.H., Kim, Y.H.W., Kim, E.S., Ko, B.S., & Oh, S.E. (2006). Development of SCAR marker for discrimination of Artemisia princeps and A. argyi from other Artemisia Herbs. Biol. Pharm. Bull., 29(4), 629-633.
- Murray, M.G., & Thompson, W.F. (1980). Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 8(9), 4321-4325.
- Prabin, B., Bryce, A.R., Jared, C.P., Richard, C.C., & Udall, J.A. (2011). Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata). BMC Genomics, 12, 370.
- Sani, A.M., Khiabani, A. & Yaghooti, F. (2016). Chemical Composition and Antimicrobial Activity of the Essential Oil of Artemisia aucheri aerial parts. Journal of Essential Oil Bearing Plants, 19(4), 875-884. https://doi.org/10.1080/0972060X.2016.1196122
- Sayed, M., Hasan, Z., Shafie, M.B., & Shah, R.M. (2009). Analysis of random amplified polymorphic DNA (RAPD) of Artemisia capillaris (Wormwood capillary) in East Coast of Peninsular Malaysia. World Applied Sciences Journal, 6(7), 976-986.
- Shafie, M.B, Hasan, M.Z., & Shah, R.M. (2009). Study of genetic variability of Woormwood capillary (Artemisia capillary) using inter simple sequence repeat (ISSR) in Pahang Region Malaysia. Plant Omics Journal, 3, 127-134.
- Shide, V.M., Dhalwal, K., Mahadik, K.R., Joshi, S., & Patwardhan, B.K. (2007). RAPD analysis for determination of components in herbal medicine. Evid Based Complement Alternat Med., 4(1), 21–23.
- Takeda, C. (1971). Atlas of Medicinal Plants Pub. Takeda Chemical Industries Ltd. Osaka, Japan (cross reference).
- Yasmin, S., & Narasegowda, P.N. (2016). Assessment of EST-SSR and RAPD markers for genetic analysis on Artemisia species. International Journal of Current Research, 8(5), 31087-31095.
- Yasmin, S., & Narasegowda, P.N. (2016). Genetic characterization of Artemisia genotypes by using RAPD marker. International Journal of Advanced Scientific Research and Publications, 2(2), 24-28.