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The fungal flora at various historical locations in Izmir, Turkey

Year 2013, Volume: 72 Issue: 1, 23 - 31, 07.11.2013

Abstract

In our study, surface and environmental air samples from the historical buildings (houses, kiosks, Turkish bath, khans, train station) in seven different locations were investigated for their fungal flora. Sampling was performed in seven locations in Izmir (Bornova, Buca, Cesme, Foca, Karsiyaka, Konak and Tire) in autumn and summer of 2009. Totally 192 isolates were obtained from the air and surface samples of these places. Air samples were collected using a MAS-100 Microbial Air Sampler (Merck) and fungal load were detected by using Rose Bengal Chloramphenicol Agar (RBCA, Merck). Biofilm samples were obtained from different surfaces (stone, wood, plaster, marble, limestone, brick and paint). As a result of our study, 25 genera related to Zygomycota, anamorph Ascomycota and teleomorph Ascomycota were identified. Besides, Aspergillus sp., Penicillium sp., Phoma sp., Alternaria sp., Chaetomium sp. and Cladosporium sp. were appeared the most frequently fungi genera. However, 6 isolates were not identified. It was observed that Aspergillus sp. was at the first stage with frequency of 21.88% while Penicillium sp. was at the second stage with 17.70%. In our study it was also shown that fungal load was much more in autumn than in summer due to its high moisture content and optimum temperature.

Keywords:

Airborne fungi, Ascomycota, Biofilm, Biomass, Microfungi.

*Corresponding Author: Aslı Sahiner (e-mail: asli.sahiner@ege.edu.tr )

(Received: 03.08.2012 Accepted: 03.01.2012)

References

  • Barnett H.L. and Hunter B.B. (1998) Illustrated genera of imperfect fungi. 4th edition, Amer Phytopathological Society, St. Paul, Minnesota.
  • Berner M., Wanner G. and Lubitz W. (1997) A comparative study of the flora present in medieval wall paintings in the chapel of the Castle Herberstein and in the Parish Church of Saint Georgen in Styria, Austria. International Biodeterioration and Biodegredation, 40 (1): 53Bjordal C.G., Nilsson T. and Daniel G. (1999) Microbial decay of waterlogged archaeological wood found in Sweden. International Biodeterioration and Biodegredation, 43 (1-2): 63-73.
  • Blanchette R.A., Nilsson T., Daniel G. and Abad A. (1990) Biological degradation of wood. In R. M.Rowell and R. J.Barbour (ed.) Archaeological wood: Properties, chemistry, and preservation, Advances in Chemistry series 225, American Chemical Society, Washington, D.C., pp. 141– 1
  • Blanchette R.A. (2000) A review of microbial deterioration found in archaeological wood from different environments. International Biodeterioration and Biodegredation, 46: 18920
  • Crispim C.A., Gaylarde C.C. and Gaylarde P.M. (2004) Biofilms on church walls in Porto Alegra, RS, Brazil, with special attention to cyanobacteria. International Biodeterioration and Biodegredation, 54 (2-3): 121-124.
  • Duncan S.M., Farrell R.L., Jordan N., Jurgens J.A. and Blanchette R.A. (2010) Monitoring and identification of airborne fungi at historic locations on Ross Island, Antarctica. Polar Science, 4: 275-283.
  • Erickson K.E., Blanchette R.A. and Ander P. (1990) Microbial and enzymatic degradation of wood and wood components. 1 st ed., Berlin: SpringerVerlag, pp. 407.
  • Gaylarde P.M. and Gaylarde C.C. (2000) Algae and cyanobacteria on painted buildings in Latin America. International Biodeterioration and Biodegredation, 46 (2): 93-97.
  • Gorbushina A.A., Dornieden T., Krumbein D.E., Heyrman J. and Delvalle M.G. (2004) Bacterial and fungal diversity and biodeterioration problems in mural painting environments of St. Martins Church, Germany. International Biodeterioration and Biodegredation, 53 (1): 13Guglielminetti M., Morghen G., Radaelli A., Bistoni F. and Carruba G. (1994) Mycological and ultrastructural studies to evaluate biodeterioration of mural paintings. Detection of fungi and mites in frescos of St Damian in Asisi. International Biodeterioration and Biodegredation, 46 (3): 269-283.
  • Guiamet P.S., Rosato V., Saravia S.G., Garcia A.M. and Moreno D.A. (2012) Biofouling of crypts of historical and architectural interest at La Plata
  • Cemetery (Argentina). Journal of Cultural Heritage, 13: 339-344. Gurtner C.S., Pinar G., Lubitz G. and Rolleke S. (2001) Analysis of fungal communities on historical church window glass by denaturing gradient gel electrophoresis and phylogenetic 18S rDNA sequence analysis. Journal of Microbiological Methods, 47 (3): 345-354.
  • Herrera L.K. and Videla H.A. (2004) The importance of atmospheric effects on biodeterioration of cultural heritage constructional materials. International Biodeterioration and Biodegredation, 54 (2-3): 125-1
  • Irbe I., Karadelev M., Andersone I. and Andersons B. (2012) Biodeterioration of external wooden structures of the Latvian cultural heritage. Journal of Cultural Heritage, 13: 79-84.
  • Jeffries P. (1986). Growth of Beauveria alba on mural paintings in Canterbury Cathedral. International Biodeterioration, 22 (1): 11-13.
  • Karpovich-Tate N. and Rebrikova N.L. (1990) Microbial communities on damaged frescoes and building materials in the cathedral of the Nativity of the Virgin in the PafnutiiBorovski Monastery, Russia. International Biodeterioration, 27 (3): 281-296.
  • Klich M.A. (2002) Identification of Common Aspergillus Species. 1st edn. Utrecht, The Netherlands.
  • Krumbein W.E. (1988) Microbial interactions with mineral materials. In Biodeterioration 7, p. 78
  • Lamenti G., Tiano P. and Tomaselli L. (2000) Biodeterioration of ornamental marble statues in the Boboli Gardens (Florence, Italy). Journal of Applied Phycology, 12 (3-5): 427-433.
  • Lewis F.J., May E. and Brevery A.F. (1988) Metabolic activity of bacteria isolated from building stone and their relationship to stone decay. Biodeterioration, 7: 107-112.
  • Oliveira M., Ribeiro H., Delgado L., Fonseca J., Castel-Branco M.G. and Abreu I. (2010) Outdoor Allergenic Fungal Spores: Comparison between an urban and rural area in Northern Portugal. Journal of Investigational Allergology and Clinical Immunology, 20: 117-128.
  • Pitt I.J. and Hocking D.A. (1985) Fungi and Food Spoilage. Academic Press, London.
  • Pitt I.J. (2000) A Laboratory Guide to Common Penicillium Species. 3rd edn. North Ryde, N.S.W., Australia.
  • Resende M.A., Resende G.C., Viana E.M., Becker T.W. and Warscheid T. (1996) Acid production of fungi isolated from stones of historical monuments in the state of Minas Gerais, Brazil. International Biodeterioration and Biodegredation, 37: 125.
  • Saarela M., Alakomi H.L., Suihko M.L., Raaska R. and Sandholm T.M. (2004) Heterotrophic microorganisms in air and biofilm samples from Roman catacombs, with special emphasis on actinobacteria and fungi. International Biodeterioration and Biodegredation, 54 (1): 27-37. Saiz-Jimenez C. and Samson R.A. (1981) Microorganism and environmental pollution as deteriorative agents of the frescoes of the monastery of Santa Maria de la Rabida, Huelva Spain. ICOM Meeting Report 5-14.
  • Sampo S. and Luppi A.M. (1989) A study of the fungi occurring on 15th century frescoes in Florance, Italy. International Biodeterioration, 25 (5): 343-353.
  • Savulescu A. and Ionata I. (1971) Contribution to the study of the biodeterioration of the works of art and historic monuments. Revue Roumanie de Biologie serie de Botanique, 16 (3): 201-206.
  • Shirakawa M.A., Beech I.B., Tapper R., Cincotto M.A. and Gambale W. (2003) The development of a method to evaluate bioreceptivity of indoor mortar plastering to fungal growth. International Biodeterioration and Biodegredation, 51 (2): 83Sorlini C., Sacchi M. and Ferrari A. (1987) Microbiological deterioration of Gambara’s frescos exposed to open air Brescia, Italy. International Biodeterioration, 23 (3): 167-179. Sterflinger K. (2010). Fungi:Their role in deterioration of cultural heritage. Fungal Biology Reviews, 24: 47-55.
  • Videla H.A., Guiamet P.S. and Saravia S.G. (2000) Biodeterioration of Mayan archaeological sites in the Yucatan Peninsula, Mexico. International Biodeterioration and Biodegredation, 46 (4): 335-3
  • Watanabe T. (2002) Soil and Seed Fungi. In Morphologies of cultured fungi and key to species. Lewis Publishers, Boca Raton, Boston, London, Washington D.C.

İzmir’de çeşitli tarihi bölgelerin mikrofungal florası

Year 2013, Volume: 72 Issue: 1, 23 - 31, 07.11.2013

Abstract

Bu çalışmada İzmir’deki bazı önemli tarihi binalarda bulunan fungal flora incelenmiştir. Örnekler, 2009 yılının sonbahar ve yaz dönemlerinde İzmir’deki yedi farklı lokasyondan (Bornova, Buca, Çeşme, Foça, Karşıyaka, Konak and Tire) toplanmıştır. Bu lokasyonların hava ve yüzey örneklerinden toplam 192 izolat elde edilmiştir. Hava örnekleri MAS-100 Microbial Air Sampler (Merck) kullanılarak toplanmıştır ve fungal yük Rose Bengal Chloramphenicol Agar (RBCA, Merck) kullanılarak belirlenmiştir. Biyofilm örnekleri çeşitli yüzeylerden (tahta, taş, plastik, mermer, kireçtaşı, tuğla ve boya) alınmıştır. Bu çalışmanın sonucunda Zygomycota, anamorf Ascomycota ve teleomorf Ascomycota’ya ait 25 genus bulunmuştur. Bunun yanında, en sık rastlanılan fungus genusları Aspergillus sp., Penicillium sp., Phoma sp., Alternaria sp., Chaetomium sp. ve Cladosporium sp. olarak bulunmuştur ancak 6 izolat tanımlanamamıştır. Aspergillus sp. %21,88 oranla en sık görülen genus olmuştur. Bunu %17,70 oranla Penicillium sp. izlemektedir. Aynı zamanda bu çalışmada, yüksek nem oranı ve optimum sıcaklığa bağlı olarak fungal yükün sonbahar döneminde, yaz dönemine göre çok daha fazla olduğu gösterilmiştir.

References

  • Barnett H.L. and Hunter B.B. (1998) Illustrated genera of imperfect fungi. 4th edition, Amer Phytopathological Society, St. Paul, Minnesota.
  • Berner M., Wanner G. and Lubitz W. (1997) A comparative study of the flora present in medieval wall paintings in the chapel of the Castle Herberstein and in the Parish Church of Saint Georgen in Styria, Austria. International Biodeterioration and Biodegredation, 40 (1): 53Bjordal C.G., Nilsson T. and Daniel G. (1999) Microbial decay of waterlogged archaeological wood found in Sweden. International Biodeterioration and Biodegredation, 43 (1-2): 63-73.
  • Blanchette R.A., Nilsson T., Daniel G. and Abad A. (1990) Biological degradation of wood. In R. M.Rowell and R. J.Barbour (ed.) Archaeological wood: Properties, chemistry, and preservation, Advances in Chemistry series 225, American Chemical Society, Washington, D.C., pp. 141– 1
  • Blanchette R.A. (2000) A review of microbial deterioration found in archaeological wood from different environments. International Biodeterioration and Biodegredation, 46: 18920
  • Crispim C.A., Gaylarde C.C. and Gaylarde P.M. (2004) Biofilms on church walls in Porto Alegra, RS, Brazil, with special attention to cyanobacteria. International Biodeterioration and Biodegredation, 54 (2-3): 121-124.
  • Duncan S.M., Farrell R.L., Jordan N., Jurgens J.A. and Blanchette R.A. (2010) Monitoring and identification of airborne fungi at historic locations on Ross Island, Antarctica. Polar Science, 4: 275-283.
  • Erickson K.E., Blanchette R.A. and Ander P. (1990) Microbial and enzymatic degradation of wood and wood components. 1 st ed., Berlin: SpringerVerlag, pp. 407.
  • Gaylarde P.M. and Gaylarde C.C. (2000) Algae and cyanobacteria on painted buildings in Latin America. International Biodeterioration and Biodegredation, 46 (2): 93-97.
  • Gorbushina A.A., Dornieden T., Krumbein D.E., Heyrman J. and Delvalle M.G. (2004) Bacterial and fungal diversity and biodeterioration problems in mural painting environments of St. Martins Church, Germany. International Biodeterioration and Biodegredation, 53 (1): 13Guglielminetti M., Morghen G., Radaelli A., Bistoni F. and Carruba G. (1994) Mycological and ultrastructural studies to evaluate biodeterioration of mural paintings. Detection of fungi and mites in frescos of St Damian in Asisi. International Biodeterioration and Biodegredation, 46 (3): 269-283.
  • Guiamet P.S., Rosato V., Saravia S.G., Garcia A.M. and Moreno D.A. (2012) Biofouling of crypts of historical and architectural interest at La Plata
  • Cemetery (Argentina). Journal of Cultural Heritage, 13: 339-344. Gurtner C.S., Pinar G., Lubitz G. and Rolleke S. (2001) Analysis of fungal communities on historical church window glass by denaturing gradient gel electrophoresis and phylogenetic 18S rDNA sequence analysis. Journal of Microbiological Methods, 47 (3): 345-354.
  • Herrera L.K. and Videla H.A. (2004) The importance of atmospheric effects on biodeterioration of cultural heritage constructional materials. International Biodeterioration and Biodegredation, 54 (2-3): 125-1
  • Irbe I., Karadelev M., Andersone I. and Andersons B. (2012) Biodeterioration of external wooden structures of the Latvian cultural heritage. Journal of Cultural Heritage, 13: 79-84.
  • Jeffries P. (1986). Growth of Beauveria alba on mural paintings in Canterbury Cathedral. International Biodeterioration, 22 (1): 11-13.
  • Karpovich-Tate N. and Rebrikova N.L. (1990) Microbial communities on damaged frescoes and building materials in the cathedral of the Nativity of the Virgin in the PafnutiiBorovski Monastery, Russia. International Biodeterioration, 27 (3): 281-296.
  • Klich M.A. (2002) Identification of Common Aspergillus Species. 1st edn. Utrecht, The Netherlands.
  • Krumbein W.E. (1988) Microbial interactions with mineral materials. In Biodeterioration 7, p. 78
  • Lamenti G., Tiano P. and Tomaselli L. (2000) Biodeterioration of ornamental marble statues in the Boboli Gardens (Florence, Italy). Journal of Applied Phycology, 12 (3-5): 427-433.
  • Lewis F.J., May E. and Brevery A.F. (1988) Metabolic activity of bacteria isolated from building stone and their relationship to stone decay. Biodeterioration, 7: 107-112.
  • Oliveira M., Ribeiro H., Delgado L., Fonseca J., Castel-Branco M.G. and Abreu I. (2010) Outdoor Allergenic Fungal Spores: Comparison between an urban and rural area in Northern Portugal. Journal of Investigational Allergology and Clinical Immunology, 20: 117-128.
  • Pitt I.J. and Hocking D.A. (1985) Fungi and Food Spoilage. Academic Press, London.
  • Pitt I.J. (2000) A Laboratory Guide to Common Penicillium Species. 3rd edn. North Ryde, N.S.W., Australia.
  • Resende M.A., Resende G.C., Viana E.M., Becker T.W. and Warscheid T. (1996) Acid production of fungi isolated from stones of historical monuments in the state of Minas Gerais, Brazil. International Biodeterioration and Biodegredation, 37: 125.
  • Saarela M., Alakomi H.L., Suihko M.L., Raaska R. and Sandholm T.M. (2004) Heterotrophic microorganisms in air and biofilm samples from Roman catacombs, with special emphasis on actinobacteria and fungi. International Biodeterioration and Biodegredation, 54 (1): 27-37. Saiz-Jimenez C. and Samson R.A. (1981) Microorganism and environmental pollution as deteriorative agents of the frescoes of the monastery of Santa Maria de la Rabida, Huelva Spain. ICOM Meeting Report 5-14.
  • Sampo S. and Luppi A.M. (1989) A study of the fungi occurring on 15th century frescoes in Florance, Italy. International Biodeterioration, 25 (5): 343-353.
  • Savulescu A. and Ionata I. (1971) Contribution to the study of the biodeterioration of the works of art and historic monuments. Revue Roumanie de Biologie serie de Botanique, 16 (3): 201-206.
  • Shirakawa M.A., Beech I.B., Tapper R., Cincotto M.A. and Gambale W. (2003) The development of a method to evaluate bioreceptivity of indoor mortar plastering to fungal growth. International Biodeterioration and Biodegredation, 51 (2): 83Sorlini C., Sacchi M. and Ferrari A. (1987) Microbiological deterioration of Gambara’s frescos exposed to open air Brescia, Italy. International Biodeterioration, 23 (3): 167-179. Sterflinger K. (2010). Fungi:Their role in deterioration of cultural heritage. Fungal Biology Reviews, 24: 47-55.
  • Videla H.A., Guiamet P.S. and Saravia S.G. (2000) Biodeterioration of Mayan archaeological sites in the Yucatan Peninsula, Mexico. International Biodeterioration and Biodegredation, 46 (4): 335-3
  • Watanabe T. (2002) Soil and Seed Fungi. In Morphologies of cultured fungi and key to species. Lewis Publishers, Boca Raton, Boston, London, Washington D.C.
There are 29 citations in total.

Details

Primary Language English
Journal Section Research Articles
Authors

Aslı Şahiner This is me

Halil Bıyık This is me

Publication Date November 7, 2013
Submission Date November 7, 2013
Published in Issue Year 2013 Volume: 72 Issue: 1

Cite

AMA Şahiner A, Bıyık H. The fungal flora at various historical locations in Izmir, Turkey. Eur J Biol. November 2013;72(1):23-31.