Türkiye Kıyısal Sularındaki Sparidae Familyasının Mitokondri DNA Dizilerine Dayalı Çoklu Lokus Filogenisi

Year 2019, Volume: 4 Issue: 3, 491 - 499, 30.12.2019

İsmail Aksu Yusuf Bektaş

https://doi.org/10.35229/jaes.627821

Abstract

Mercan balıkları en değerli balık türleri arasında olup tropik ve sıcak
kıyısal sularda geniş dağılım gösteren 33 genusa ait yaklaşık 141 türden
oluşmaktadır. Sparidae içindeki genus ve alt familya ilişkilerini izah
edebilmek için Türkiye kıyı suları için tanımlanan 22 mercan türünün dört
mitokondri DNA bölgesi (16S rDNA, COI, Cyt b
genleri ve kontrol bölgesi)’nin 3562 bç’lik bölgesi analiz edilmiştir. Dört
farklı metot (NJ, MP, ML ve BI) kullanılarak oluşturulan filogenetik ağaçlar
parafiletik alt familyalara sahip Sparidae familyasının monofilisini
göstermiştir. Genetik verilere dayalı olarak Türkiye kıyısal sularındaki sparid
türleri, daha önceki taksonomik hipotezlerin aksine iki ana haplogruba
ayrılmıştır. Elde edilen filogenetik ağaçlar Sparidae familyası içindeki alt
familyaların varlığını desteklememektedir. Bu nedenle morfometrik tekniklerle
belirlenen alt familya düzeyinde yapılanmayı destekleyecek ve bu gruplar içinde
tutarlı olacak birleştirici karakterler araştırılmalıdır. Sparidae familyası
içindeki genuslar arasındaki filogeni yeniden oluşturulmalıdır.

Keywords

Sparidae, mtDNA, filogeni, Türkiye kıyısal suları

References

• Akazaki, M. (1962). Studies on the perciform fishes anatomy, phylogeny, ecology, and taxonomy. Osaka Japan, 8 Kosugi Co. Ltd., 368 s.
• Armani, A., Guardone, L., Castigliego, L., D'Amico, P., Messina, A., Malandra, R., Gianfaldoni, D. & Guidi, A. (2015). DNA and Mini-DNA barcoding for the identification of Porgies species (family Sparidae) of commercial interest on the international market. Food Control, 50, 589-596.
• Bauchot, M.L. & Hureau, J.C. (1986). Sparidae. 883-907 s. P.J.P. Whitehead, M.L. Bauchot, J.C. Hureau, J. Nielsen and E. Tortonese (ed), Fishes of the North-eastern Atlantic and the Mediterranean, UNESCO, ISBN: 9230022152, 1473 s.
• Cawthorn, D.M., Steinman, H.A. & Witthuhn, R.C. (2012). Evaluation of the 16S and 12S rRNA genes as universal markers for the identification of commercial fish species in South Africa. Gene, 491, 40-48. DOI: 10.1016/j.gene.2011.09.009.
• Chiba, S.N., Iwatsuki, Y., Yoshino, T. & Hanzawa, N. (2009). Comprehensive phylogeny of the family Sparidae (Perciformes: Teleostei) inferred from mitochondrial gene analyses. Genes and Genetic Systems, 84 (2), 153-170. DOI: 10.1266/ggs.84.153.
• Day, J.J. (2002). Phylogenetic relationships of the Sparidae (Teleostei: Percoidei) and implications for convergent trophic evolution. Biological Journal of the Linnean Society, 76, 269–301.
• De La Herran, R., Ruiz Rejon, C., Ruiz Rejon, M. & Garrido-Ramos, M. (2001). The Molecular Phylogeny of the Sparidae (Pisces, Perciformes) based on two satellite dna families. Heredity, 87 (6), 691–697. DOI: 10.1046/j.1365-2540.2001.00967.x.
• Duftner, N., Sefc, K.M., Koblmuller, S., Salzburger, W. & Taborsky, M. (2007). Parallel evolotion of facial stripe patterns in the Neolamprologus brichardilpulcher species complex endemic to Lake Tanganyika. Molecular Phylogenetics and Evolution, 45, 706-715.
• Fiedler, K. (1991). Familie Sparidae. In: Starck D (ed) Lehrbuch der Speziellen Zoologie. Teil 2: Fische. Gustav Fischer Verlag, Jena, 354–355.
• Golani, D., Öztürk, B., Başusta, N. ve Darom, D. (2006). Sparidae. 160-167 s. D. Golani (ed), Fishes of the Eastern Mediterranean, Graphis matbaa., ISBN: 9789758825127, 260 s.
• Hall, T.A. (1999). Bioedit: a user-friendly biological sequence alignment editör and analysis program for Windows 95/98/NT. Nucleic Acids Symposium, 41, 95-98.
• Hanel, R. & Sturmbauer, C. (2000). Multiple Recurrent Evolution of Trophic Types in Northeastern Atlantic and Mediterranean Seabreams (Sparidae, Percoidei). Journal of Molecular Evolution, 50, 276-283. DOI: 10.1007/s002399910032.
• Huelsenbeck, J.P. & Ronquist, F., (2001). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics Applications Note, 19(12), 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
• Iwatsuki, Y., Newman, S.J. & Russell, B.C. (2015). Dentex carpenteri, a new species of deepwater seabream from Western Australia (Pisces: Sparidae). Zootaxa, 3957(1), 109-119 Doi: 10.11646/zootaxa.3957.1.9
• Kalendar, R., Lee, D. & Schulman, A.H., (2009). FastPCR Software for PCR Primer and Probe Design and Repeat Search. Genes, Genomes and Genomics, 3(1), 1-14.
• Librado, P. & Rozas, J., (2009). DnaSP v5. A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452. https://doi.org/10.1093/bioinforma tics/btp187.
• Nelson, J.S., (2006). Perciformes. 339-440 s. J.S. Nelson (ed), Fishes of the World, John Wiley and Sons Inc., ISBN: 978-0-471-25031-9, 539 s.
• Orrell, T.M. & Carpenter, K.E., (2004). A phylogeny of the fish family Sparidae (porgies) inferred from mitochondrial sequence data. Molecular Phylogenetics and Evolution, 32, 425-434. DOI: 10.1016/j.ympev.2004.01.012.
• Orrell, T.M., Carpenter, K.E., Musick, J.A. & Graves, J.E., (2002). A phylogenetic and biogeographic analysis of the Sparidae (Perciformes: Percoidei) based on cytochrome b sequences. Copeia, 3, 618-631. DOI: 10.1643/00458511(2002)-002[0618.
• Ostellari, L., Bargelloni, L., Penzo, E., Patarnello, P. & Patarnello, T., (1996). Optimization of single-strand conformation polymorphism and sequence analysis of the mitochondrial control region in Pagellus bogaraveo (Sparidae, Teleostei): rationalized tools in Wsh population biology. Animal Genetics, 27, 423–427.
• Posada, D., (2008)., jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution, 25(7), 1253-1256.
• Smith, J.L.B. & Smith, M.M., (1986). Family No. 183: Sparidae. 580-594 s. M.M. Smith and P.C. Heemstra (Ed), Smith’s Sea Fishes, Springer, 1050 s.
• Smith, J.L.B., (1938). The South African fishes of the families Sparidae and Denticidae. Transactions of the Royal Society of South Africa, 26, 225–305.
• Summerer, M., Hanel, R. & Sturmbauer, C., (2001). Mitochondrial phylogeny and biogeographic affinities of sea bream of the genus Diplodus (Sparidae). Journal of Fish Biology, 59, 1639-1652. DOI: 10.1080/17451000.2010.499438.
• Swofford, D.L., (2003). PAUP. Phylogenetic Analysis Using Parsimony. Version 4. Sinauer Associates, Sunderland, Massachusetts.
• Tamura, K., Dudley, J., Nei, M. & Kumar, S., (2007). MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596–1599. DOI: 10.1093/molbev/msm092.
• Viret, A., Tsaparis D., Tsigenopoulos, C.S., Berrebi, P., Sabatini, A., Arculeo, M., Fassatoui, C., Magoulas, A., Marengo, M., Morales-Nin, B., Caill-Milly, N. & Durieux, E.D.H., (2018). Absence of spatial genetic structure in common Dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers. PLoS ONE, 13 (9), 1-21. https://doi.org/10.1371/journal. pone.0203866
• Westneat, M.W., Alfaro, M.E., Wainwright, P.C., Bellwood, D.R., Grubich, J.R., Fessler, J.R., Clements, K.D. & Smith, L.L., (2005). Local phylogenetic divergence and global evolutionary convergence of skull function in reef fishes of the family Labridae. Proceedings of the Royal Society B: Biological Sciences, 272, 993-1000.
• Bektaş, Y., Aksu, İ. & Kalaycı, G. (2016). Türkiye'deki İsparoz (Diplodus annularis Linnaeus, 1758) Populasyonlarının mtDNA Cyt b Genine Dayalı Genetik Analizi. Journal of Anatolian Environmental & Animal Sciences, 1(2), 37-43.