Genome-Wide Analysis and Characterization of FBA (Fructose 1,6-bisphosphate aldolase) Gene Family of Phaseolus vulgaris L

Sümeyra Uçar; Şeyma Alım; Ayşe Gül Kasapoğlu; Esma Yigider; Emre İlhan; Murat Turan; Aysun Polat; Neslihan Dikbaş; Murat Aydın

doi:10.56430/japro.1432135

EN

Genome-Wide Analysis and Characterization of FBA (Fructose 1,6-bisphosphate aldolase) Gene Family of Phaseolus vulgaris L

Abstract

Fructose-1,6-biphosphate aldolase (FBA) genes have important roles in plant stress responses. At the same time, these genes positively affect growth and development in plants. FBA is involved in gluconeogenesis, glycolysis, and the Calvin-Benson cycle, and it is an enzyme that plays an important role in signal transduction of these stages. This study aims to determine and characterize the FBA gene family in the bean genome. As a result of the study, 7 Pvul-FBA genes were determined in the bean (Phaseolus vulgaris L.) genome. The highest amino acid number of Pvul-FBA proteins was determined in the Pvul-FBA-1 gene (1374), and the highest molecular weight (43.03 kDa) was determined in the Pvul-FBA-7 gene. Again, the highest isoelectric point (8.03) was determined in the Pvul-FBA-3 gene. It has been determined that the Pvul-FBA-6/Pvul-FBA-7 genes are segmental duplicated genes. The main four groups were obtained according to the phylogenetic analysis consisting of FBA proteins of three plants (P. vulgaris, Glycine max, and Arabidopsis thaliana). As a result of interproscan analysis, Motif-1, 2, 3, 4 and 5 were found to contain the fructose-bisphosphate aldolase domain. According to in silico gene expression analysis, it was determined that the expression rates of Pvul-FBA genes increased or decreased under salt and drought stress conditions. Synteny analyses of FBA genes in common bean and A. thaliana plants showed that these three plants have a relationship in terms of FBA genes. The results of this research will allow a better designation of the molecular structure of the FBA gene family in common bean.

Keywords

Fructose-bisphosphate aldolase , Gene duplication , Gene expression , In silico analysis , Phaseolus vulgaris L

References

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Details

Primary Language

English

Subjects

Plant Biotechnology in Agriculture

Journal Section

Research Article

Authors

Sümeyra Uçar
0000-0002-7629-0206
Türkiye

Şeyma Alım
0000-0001-6684-7974
Türkiye

Ayşe Gül Kasapoğlu
0000-0002-6447-4921
Türkiye

Esma Yigider
0000-0002-6896-0193
Türkiye

Emre İlhan
0000-0002-8404-7900
Türkiye

Murat Turan
0000-0003-2900-1755
Türkiye

Aysun Polat
0009-0001-3856-0324
Türkiye

Neslihan Dikbaş
0000-0001-9096-2761
Türkiye

Murat Aydın ^*
0000-0003-1091-0609
Türkiye

Early Pub Date

March 28, 2024

Publication Date

March 31, 2024

Submission Date

February 6, 2024

Acceptance Date

March 1, 2024

Published in Issue

Year 2024 Volume: 5 Number: 1

DOI

https://doi.org/10.56430/japro.1432135

IZ

https://izlik.org/JA42MY32MZ

APA

Uçar, S., Alım, Ş., Kasapoğlu, A. G., Yigider, E., İlhan, E., Turan, M., Polat, A., Dikbaş, N., & Aydın, M. (2024). Genome-Wide Analysis and Characterization of FBA (Fructose 1,6-bisphosphate aldolase) Gene Family of Phaseolus vulgaris L. Journal of Agricultural Production, 5(1), 30-40. https://doi.org/10.56430/japro.1432135

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Genome-Wide Analysis and Characterization of FBA (Fructose 1,6-bisphosphate aldolase) Gene Family of Phaseolus vulgaris L

Abstract

Keywords

References

Details

Primary Language

Subjects

Journal Section

Authors

Early Pub Date

Publication Date

Submission Date

Acceptance Date

Published in Issue

DOI

IZ

Cite

Cited By

Identification and Characterization of Common Bean OFP Gene Family Under Environmental Stresses

AI-Integrated Omics Analysis Reveals Cultivar-Specific Resistance Mechanisms to Powdery Mildew in Cucurbita pepo