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Genetic Characterization of Turkish Commercial Opium Poppy (Papaver somniferum L.) Cultivars Using ISSR and SSR Markers

Year 2014, Volume: 3 Issue: 7, 48 - 57, 01.07.2014

Abstract

– Economically important plant opium poppy (Papaver somniferum L.) is a medicinal plant producing benzylisoquinoline alkaloids such as narcotic analgesic morphine and codeine, antimicrobial agent sanguinarine. In this study, it was aimed to utilize simple sequence repeat (SSR) and inter simple sequence repeat (ISSR) markers to help breeding programs of opium poppy containing high level of morphine. 15 ISSR and 5 SSR primers were studied on registered 17 cultivars in Turkey. In ISSR, total 55 bands were obtained, of which 44 were polymorphic. Average genetic distance was found to be 0.27, and Shannon index was 0.38. The least number of bands belonging to primer AT3 was 1 and the highest was 6, belonging to primers AT19, AT8 and AT15. In SSR study, 5 SSR primers were studied and 39 polymorphic bands were obtained. Average genetic distance was found to be 0.47, and Shannon index was 0.46. As a result ISSR and SSR marker systems can be used for classification of the cultivars

References

  • A. Gümüşçü, N. Arslan, Comparing yield and yield components of some selected poppy (Papaver somniferum L.) lines, Turkish Journal of Agriculture and Forestry. (1998) 23: 991–997.
  • P.J. Facchini, M. Hagel, K. Liscombe, N. Loukanina, P. MacLeod, N. Samanani, K.G., Zulak, Opium poppy: blueprint for an alkaloid factory, Phytochem Rev. (2007) 6:97–124 T.C. Toprak Mahsulleri Ofisi Genel Müdürlüğü. 2011 Yılı TMO Haşhaş raporu. http://www.tmo.gov.tr/Upload/Document/raporlar/hashassektor2011.pdf. (August 23, 2014).
  • E. Zietkiewicz, A.D. Rafalski, Labuda Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification, Genomics. (1994). 20: 176–183.
  • S. Hamza, W.B. Hamida, A. Rebai, M. Harrabi, SSR-based genetic diversity assessment among Tunisian winter barley and relationship with morphological traits, Euphytica. (2004). 135: 107–118.
  • P.K. Gupta, R.K. Varshney, M. Prasad, Molecular markers: principles and methodology. In: Jain SM, Brar DS, Ahloowalia BS (eds.). Molecular techniques in crop improvement. Kluwer Academic Publishers, Dordrecht.The Netherlands. (2002) pp. 9-54.
  • H. Budak, R.C. Shearman, I. Parmaksiz, I. Dweikat, Comparative analysis of seeded and vegetative biotype buffalograsses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs, Theoretical and Applied Genetics. (2004). 109: 280–288.
  • M.A. Alam, P.K. Naik, G.P. Mishra. Congruence of RAPD and ISSR Markers for Evaluation of Genomic Relationship Among 28 Populations of Podophyllum hexandrum Royle from Himachal Pradesh, India, Turkish Journal of Botany. (2009). 33: 1-12.
  • H. Bayraktar, K. Akan, Genetic characterization of Pyrenophora graminea isolates and the reactions of some barley cultivars to leaf stripe disease under greenhouse conditions, Turkish Journal of Agriculture and Forestry. (2011). 36: 329-339.
  • H. Hamza, M.A. Benabderrahim, M. Elbekkay, G. Ferdaous, T. Triki, A. Ferchichi. Investigation of genetic variation in Tunisian date palm (Phoenix dactylifera L.) cultivars using ISSR marker systems and their relation with fruit characteristics, Turkish Journal of Biology (2012). 36: 449-458.
  • İ. Parmaksız and S. Özcan, Morphological, chemical, and molecular analyses of Turkish Papaver accessions (Sect. Oxytona), Turkish Journal of Botany. (2011). 35: 1–16.
  • T. Gürkök E. Kaymak, G. Boztepe, M. Koyuncu, İ. Parmaksız. Molecular characterisation of the genus Papaver section Oxytona using ISSR markers, Turk J Bot. (2013). 37: 644–65.
  • H. Acharya, V. Sharma, Molecular Characterization of Opium Poppy (Papaver somniferum L.) Germplasm, American Journal of Infectious Diseases. (2009). 5 (2): 148-153.
  • J.A. Saunders, M.J. Pedroni D.J.P. Lindsay J.F. Anthony, AFLP Analysis of Opium Poppy, Crop Science. (2001). 41(5): 1596-1601.
  • F. Lu, B.W. Cheng, H. Li, J.J. Hong, H.Y. Sun, W.S. Zhao, H.M. Yang, J. Li, Y.R., DNA polymorphism detection of Papaver somniferum L. using fluorescent amplified fragment length polymorphism, Fa Yi Xue Za Zhi. (2001) 24 (4):262-4, 267.
  • M. Nei, Genetic distance between populations, The American Naturalist. (1972) 106: 283-292.
  • N. Nei, W. Li, Mathematical model for studying genetic variation in terms of restriction endonucleases, Proceedings of the National Academy of Sciences. (1979). 76: 5269-5273.
  • F.C. Yeh, R.C. Yang, T. Boyle, Popgene version 1.31. Microsoft Windows based freeware for population genetic analysis, University of Alberta and Tim Boyle, Centre for International Forestry Research, Edmonton, Alta, Canada (1999).
  • K. Tamura, J. Dudley, M. Nei, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Mol Biol Evol. (2007) 24:1596–1599.
  • S. Kumar, M. Nei, J. Dudley, K. Tamura, MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequence, Brief Bioinform. (2008) 9(4): 299–306.
  • K.R. Sivaprakash, S.R. Prasanth, B.P. Mohanty, A. Parida, Genetic diversity of black gram landraces as evaluated by AFLP markers. Current Science. (2004). 86 (10):1411 1415.
  • L. Huang, Z. Chen, X. Zhang, Z. Wang, C. Liu, A Comparative Analysis of Molecular Diversity of Erect Milkvetch (Astragalus adsurgens) Germplasmfrom North China Using RAPD and ISSR Markers, Biochemical Genetics. (2009). 47: 92– 99.
  • Z. Weiguo, Z. Zhihua, M. Xuexia, Y. Zhang, W. Sibao, H. Jianhua, X. Hui, P. Yie, H. Yongping. A comparison of genetic variation among wild and cultivated Morus Species (Moraceae: Morus) as revealed by ISSR and SSR markers, Biodiversity and Conservation. (2007) 16: 275–290.
  • H. Ikegami, H. Nogata, K. Hirashima, M. Awamura, T. Nakahara. Analysis of genetic diversity among European and Asian fig varieties (Ficus carica L.) using ISSR, RAPD, and SSR markers, Genet. Resour. Crop Evol. (2009). 56 (2): 201-209.
  • P. Tantasawat, J. Trongchuen, T. Prajongjai, W. Seehalak, Y. Jittayasothorn. Variety identification and comparative analysis of genetic diversity in yardlong bean (Vigna unguiculata spp. sesquipedalis) using morphological characters, SSR and ISSR analysis. Sci. Hortic. (2010). 124: 204-216.
  • R.M. Devarumath, S.B. Kalwade, P.G. Kawar, K.V. Sushir, Assessment of Genetic Diversity in Sugarcane Germplasm Using ISSR and SSR Markers, Sugar Tech. (2012). 14 (4): 334-344.
  • H.Y. Li, Z.Y. Li, L.Y. Cai, W.G. Shi, F.G. Mi, F.L. Shi, Analysis of genetic diversity of Ruthenia Medic (Medicago ruthenica (L.) Trautv.) in Inner Mongolia using ISSR and SSR markers, Genet Resour Crop Evol. (2008). 60(5): 1687-1694.
  • Z. Noormohammadi, H. Samadi-Molayousefi, M. Sheidai, Intra-specific genetic diversity in wild olives (Olea europaea ssp cuspidata) in Hormozgan Province, Iran, Genet. Mol. Res. (2012). 11 (1): 707-716.
  • S. Gomes, P. Martins-Lopes, J. Lopes, H. Guedes-Pinto, Assessing Genetic Diversity in Olea europaea L. Using ISSR and SSR Markers, Plant Mol Biol Rep. (2009). 27: 365–373.
  • X. Jia, T. Wang, M. Zhai, Y. Li, Z. Guo, Genetic Diversity and Identification of Chinese-Grown Pecan Using ISSR and SSR Markers, Molecules. (2011). 16: 10078- 1009.
Year 2014, Volume: 3 Issue: 7, 48 - 57, 01.07.2014

Abstract

References

  • A. Gümüşçü, N. Arslan, Comparing yield and yield components of some selected poppy (Papaver somniferum L.) lines, Turkish Journal of Agriculture and Forestry. (1998) 23: 991–997.
  • P.J. Facchini, M. Hagel, K. Liscombe, N. Loukanina, P. MacLeod, N. Samanani, K.G., Zulak, Opium poppy: blueprint for an alkaloid factory, Phytochem Rev. (2007) 6:97–124 T.C. Toprak Mahsulleri Ofisi Genel Müdürlüğü. 2011 Yılı TMO Haşhaş raporu. http://www.tmo.gov.tr/Upload/Document/raporlar/hashassektor2011.pdf. (August 23, 2014).
  • E. Zietkiewicz, A.D. Rafalski, Labuda Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification, Genomics. (1994). 20: 176–183.
  • S. Hamza, W.B. Hamida, A. Rebai, M. Harrabi, SSR-based genetic diversity assessment among Tunisian winter barley and relationship with morphological traits, Euphytica. (2004). 135: 107–118.
  • P.K. Gupta, R.K. Varshney, M. Prasad, Molecular markers: principles and methodology. In: Jain SM, Brar DS, Ahloowalia BS (eds.). Molecular techniques in crop improvement. Kluwer Academic Publishers, Dordrecht.The Netherlands. (2002) pp. 9-54.
  • H. Budak, R.C. Shearman, I. Parmaksiz, I. Dweikat, Comparative analysis of seeded and vegetative biotype buffalograsses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs, Theoretical and Applied Genetics. (2004). 109: 280–288.
  • M.A. Alam, P.K. Naik, G.P. Mishra. Congruence of RAPD and ISSR Markers for Evaluation of Genomic Relationship Among 28 Populations of Podophyllum hexandrum Royle from Himachal Pradesh, India, Turkish Journal of Botany. (2009). 33: 1-12.
  • H. Bayraktar, K. Akan, Genetic characterization of Pyrenophora graminea isolates and the reactions of some barley cultivars to leaf stripe disease under greenhouse conditions, Turkish Journal of Agriculture and Forestry. (2011). 36: 329-339.
  • H. Hamza, M.A. Benabderrahim, M. Elbekkay, G. Ferdaous, T. Triki, A. Ferchichi. Investigation of genetic variation in Tunisian date palm (Phoenix dactylifera L.) cultivars using ISSR marker systems and their relation with fruit characteristics, Turkish Journal of Biology (2012). 36: 449-458.
  • İ. Parmaksız and S. Özcan, Morphological, chemical, and molecular analyses of Turkish Papaver accessions (Sect. Oxytona), Turkish Journal of Botany. (2011). 35: 1–16.
  • T. Gürkök E. Kaymak, G. Boztepe, M. Koyuncu, İ. Parmaksız. Molecular characterisation of the genus Papaver section Oxytona using ISSR markers, Turk J Bot. (2013). 37: 644–65.
  • H. Acharya, V. Sharma, Molecular Characterization of Opium Poppy (Papaver somniferum L.) Germplasm, American Journal of Infectious Diseases. (2009). 5 (2): 148-153.
  • J.A. Saunders, M.J. Pedroni D.J.P. Lindsay J.F. Anthony, AFLP Analysis of Opium Poppy, Crop Science. (2001). 41(5): 1596-1601.
  • F. Lu, B.W. Cheng, H. Li, J.J. Hong, H.Y. Sun, W.S. Zhao, H.M. Yang, J. Li, Y.R., DNA polymorphism detection of Papaver somniferum L. using fluorescent amplified fragment length polymorphism, Fa Yi Xue Za Zhi. (2001) 24 (4):262-4, 267.
  • M. Nei, Genetic distance between populations, The American Naturalist. (1972) 106: 283-292.
  • N. Nei, W. Li, Mathematical model for studying genetic variation in terms of restriction endonucleases, Proceedings of the National Academy of Sciences. (1979). 76: 5269-5273.
  • F.C. Yeh, R.C. Yang, T. Boyle, Popgene version 1.31. Microsoft Windows based freeware for population genetic analysis, University of Alberta and Tim Boyle, Centre for International Forestry Research, Edmonton, Alta, Canada (1999).
  • K. Tamura, J. Dudley, M. Nei, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Mol Biol Evol. (2007) 24:1596–1599.
  • S. Kumar, M. Nei, J. Dudley, K. Tamura, MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequence, Brief Bioinform. (2008) 9(4): 299–306.
  • K.R. Sivaprakash, S.R. Prasanth, B.P. Mohanty, A. Parida, Genetic diversity of black gram landraces as evaluated by AFLP markers. Current Science. (2004). 86 (10):1411 1415.
  • L. Huang, Z. Chen, X. Zhang, Z. Wang, C. Liu, A Comparative Analysis of Molecular Diversity of Erect Milkvetch (Astragalus adsurgens) Germplasmfrom North China Using RAPD and ISSR Markers, Biochemical Genetics. (2009). 47: 92– 99.
  • Z. Weiguo, Z. Zhihua, M. Xuexia, Y. Zhang, W. Sibao, H. Jianhua, X. Hui, P. Yie, H. Yongping. A comparison of genetic variation among wild and cultivated Morus Species (Moraceae: Morus) as revealed by ISSR and SSR markers, Biodiversity and Conservation. (2007) 16: 275–290.
  • H. Ikegami, H. Nogata, K. Hirashima, M. Awamura, T. Nakahara. Analysis of genetic diversity among European and Asian fig varieties (Ficus carica L.) using ISSR, RAPD, and SSR markers, Genet. Resour. Crop Evol. (2009). 56 (2): 201-209.
  • P. Tantasawat, J. Trongchuen, T. Prajongjai, W. Seehalak, Y. Jittayasothorn. Variety identification and comparative analysis of genetic diversity in yardlong bean (Vigna unguiculata spp. sesquipedalis) using morphological characters, SSR and ISSR analysis. Sci. Hortic. (2010). 124: 204-216.
  • R.M. Devarumath, S.B. Kalwade, P.G. Kawar, K.V. Sushir, Assessment of Genetic Diversity in Sugarcane Germplasm Using ISSR and SSR Markers, Sugar Tech. (2012). 14 (4): 334-344.
  • H.Y. Li, Z.Y. Li, L.Y. Cai, W.G. Shi, F.G. Mi, F.L. Shi, Analysis of genetic diversity of Ruthenia Medic (Medicago ruthenica (L.) Trautv.) in Inner Mongolia using ISSR and SSR markers, Genet Resour Crop Evol. (2008). 60(5): 1687-1694.
  • Z. Noormohammadi, H. Samadi-Molayousefi, M. Sheidai, Intra-specific genetic diversity in wild olives (Olea europaea ssp cuspidata) in Hormozgan Province, Iran, Genet. Mol. Res. (2012). 11 (1): 707-716.
  • S. Gomes, P. Martins-Lopes, J. Lopes, H. Guedes-Pinto, Assessing Genetic Diversity in Olea europaea L. Using ISSR and SSR Markers, Plant Mol Biol Rep. (2009). 27: 365–373.
  • X. Jia, T. Wang, M. Zhai, Y. Li, Z. Guo, Genetic Diversity and Identification of Chinese-Grown Pecan Using ISSR and SSR Markers, Molecules. (2011). 16: 10078- 1009.
There are 29 citations in total.

Details

Primary Language English
Journal Section Articles
Authors

Gülşen Boztepe Güçlü This is me

Tuğba Gürkök This is me

Mesut Koyuncu This is me

Neşet Arslan This is me

İskender Parmaksız This is me

Publication Date July 1, 2014
Published in Issue Year 2014 Volume: 3 Issue: 7

Cite

APA Güçlü, G. B., Gürkök, T., Koyuncu, M., Arslan, N., et al. (2014). Genetic Characterization of Turkish Commercial Opium Poppy (Papaver somniferum L.) Cultivars Using ISSR and SSR Markers. Journal of New Results in Science, 3(7), 48-57.
AMA Güçlü GB, Gürkök T, Koyuncu M, Arslan N, Parmaksız İ. Genetic Characterization of Turkish Commercial Opium Poppy (Papaver somniferum L.) Cultivars Using ISSR and SSR Markers. JNRS. July 2014;3(7):48-57.
Chicago Güçlü, Gülşen Boztepe, Tuğba Gürkök, Mesut Koyuncu, Neşet Arslan, and İskender Parmaksız. “Genetic Characterization of Turkish Commercial Opium Poppy (Papaver Somniferum L.) Cultivars Using ISSR and SSR Markers”. Journal of New Results in Science 3, no. 7 (July 2014): 48-57.
EndNote Güçlü GB, Gürkök T, Koyuncu M, Arslan N, Parmaksız İ (July 1, 2014) Genetic Characterization of Turkish Commercial Opium Poppy (Papaver somniferum L.) Cultivars Using ISSR and SSR Markers. Journal of New Results in Science 3 7 48–57.
IEEE G. B. Güçlü, T. Gürkök, M. Koyuncu, N. Arslan, and İ. Parmaksız, “Genetic Characterization of Turkish Commercial Opium Poppy (Papaver somniferum L.) Cultivars Using ISSR and SSR Markers”, JNRS, vol. 3, no. 7, pp. 48–57, 2014.
ISNAD Güçlü, Gülşen Boztepe et al. “Genetic Characterization of Turkish Commercial Opium Poppy (Papaver Somniferum L.) Cultivars Using ISSR and SSR Markers”. Journal of New Results in Science 3/7 (July 2014), 48-57.
JAMA Güçlü GB, Gürkök T, Koyuncu M, Arslan N, Parmaksız İ. Genetic Characterization of Turkish Commercial Opium Poppy (Papaver somniferum L.) Cultivars Using ISSR and SSR Markers. JNRS. 2014;3:48–57.
MLA Güçlü, Gülşen Boztepe et al. “Genetic Characterization of Turkish Commercial Opium Poppy (Papaver Somniferum L.) Cultivars Using ISSR and SSR Markers”. Journal of New Results in Science, vol. 3, no. 7, 2014, pp. 48-57.
Vancouver Güçlü GB, Gürkök T, Koyuncu M, Arslan N, Parmaksız İ. Genetic Characterization of Turkish Commercial Opium Poppy (Papaver somniferum L.) Cultivars Using ISSR and SSR Markers. JNRS. 2014;3(7):48-57.


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