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The Isolation of Streptomyces species in Different Soil Sources from Middle Anatolian Regions of Turkey

Year 2022, Volume: 5 Issue: 2, 157 - 166, 30.11.2022

Abstract

Streptomyces is the largest species of the actinomycetes group, with more than 500 defined species, aerobic, gram-positive, and phylogenetic class filamentous (thin protruding in thread form). It is a large group that is mostly found in the soil and as a secondary metabolite of its fermentation, it enables the production of various and important components (antibiotics, chemotherapeutics, fungicides, herbicides, and immunosuppressants) in the field of industry and medicine. In this study, six bacterial isolates were isolated from soil samples in different regions of Turkey. Morphological characteristics, gram staining, and PCR test were applied for identification. Six isolates, Streptomyces mutabilis, S. collinus, S. peucetius, S. cyaneofuscatus, S. albogriseolus and, S. griseoflavus, were compared with the general characteristics of the Streptomyces species in International Streptomyces Project. Air and reverse side mycelium color were determined, and all were confirmed by the gram-positive test. Studies have shown that the regions of Ankara and Konya are rich in Streptomyces species.

Thanks

Authors would like to thank to Safa Tarim AS for their support.

References

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  • 2. Takahashi Y, Nakashima T. Actinomycetes, an Inexhaustible Source of Naturally Occurring Antibiotics. Antibiot (Basel, Switzerland) [Internet]. 2018 May 24;7(2):45. Available from: https://pubmed.ncbi.nlm.nih.gov/29795019
  • 3. de Lima Procópio RE, da Silva IR, Martins MK, de Azevedo JL, de Araújo JM. Antibiotics produced by Streptomyces. Brazilian J Infect Dis [Internet]. 2012;16(5):466–71. Available from: https://www.sciencedirect.com/science/article/pii/S1413867012001341
  • 4. Poomthongdee N, Duangmal K, Pathom-aree W. Acidophilic actinomycetes from rhizosphere soil: diversity and properties beneficial to plants. J Antibiot (Tokyo) [Internet]. 2015;68(2):106–14. Available from: https://doi.org/10.1038/ja.2014.117
  • 5. De Simeis D, Serra S. Actinomycetes: A Never-Ending Source of Bioactive Compounds—An Overview on Antibiotics Production. Vol. 10, Antibiotics . 2021.
  • 6. Hug JJ, Bader CD, Remškar M, Cirnski K, Müller R. Concepts and Methods to Access Novel Antibiotics from Actinomycetes. Antibiot (Basel, Switzerland) [Internet]. 2018 May 22;7(2):44. Available from: https://pubmed.ncbi.nlm.nih.gov/29789481
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  • 8. Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Klenk H-P, et al. Taxonomy, physiology, and natural products of Actinobacteria. Microbiol Mol Biol Rev. 2016;80(1):1–43.
  • 9. Tchinda RAM, Boudjeko T, Simao-Beaunoir A-M, Lerat S, Tsala É, Monga E, et al. Morphological, physiological, and taxonomic characterization of actinobacterial isolates living as endophytes of cacao pods and cacao seeds. Microbes Environ. 2016;ME15146.
  • 10. Book AJ, Lewin GR, McDonald BR, Takasuka TE, Wendt-Pienkowski E, Doering DT, et al. Evolution of high cellulolytic activity in symbiotic Streptomyces through selection of expanded gene content and coordinated gene expression. PLoS Biol. 2016;14(6):e1002475.
  • 11. Anderson AS, Wellington EM. The taxonomy of Streptomyces and related genera. Int J Syst Evol Microbiol. 2001 May;51(Pt 3):797–814.
  • 12. Williams ST. Genus Streptomyces waksman and henrici 1943. Bwergey’s Man Syst Bacteriol. 1989;4:2452–92.
  • 13. Sharma A, Gautam S, Saxena S. Streptomyces. In: Batt CA, Tortorello MLBT-E of FM (Second E, editors. Oxford: Academic Press; 2014. p. 560–6. Available from: https://www.sciencedirect.com/science/article/pii/B9780123847300003268
  • 14. Ogata S. Morphological and physiological differentiation in Streptomyces. J Agric Chem Soc Japan. 1991;
  • 15. Hain T, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E, Rainey FA. Discrimination of Streptomyces albidoflavus Strains Based on the Size and Number of 16S-23S Ribosomal DNA Intergenic Spacers. Int J Syst Evol Microbiol [Internet]. 1997;47(1):202–6. Available from: https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-47-1-202
  • 16. Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol. 1997;47(2):479–91.
  • 17. Kim B, Sahin N, Minnikin DE, Zakrzewska-Czerwinska J, Mordarski M, Goodfellow M. Classification of thermophilic streptomycetes, including the description of Streptomyces thermoalcalitolerans sp. nov. Int J Syst Bacteriol. 1999 Jan;49 Pt 1:7–17.
  • 18. Labeda DP. DNA relatedness among strains of the Streptomyces lavendulae phenotypic cluster group. Int J Syst Bacteriol [Internet]. 1993;43(4):822–5. Available from: https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-43-4-822
  • 19. Labeda DP, Lyons AJ. Deoxyribonucleic Acid Relatedness Among Species of the “Streptomyces cyaneus“ Cluster. Syst Appl Microbiol [Internet]. 1991;14(2):158–64. Available from: https://www.sciencedirect.com/science/article/pii/S072320201180295X
  • 20. Williams ST, Goodfellow M, Wellington EM, Vickers JC, Alderson G, Sneath PH, et al. A probability matrix for identification of some Streptomycetes. J Gen Microbiol. 1983 Jun;129(6):1815–30.
  • 21. Rashad FM, Fathy HM, El-Zayat AS, Elghonaimy AM. Isolation and characterization of multifunctional Streptomyces species with antimicrobial, nematicidal and phytohormone activities from marine environments in Egypt. Microbiol Res [Internet]. 2015;175:34–47. Available from: https://www.sciencedirect.com/science/article/pii/S0944501315000361
  • 22. Siddique S, Syed Q, Adnan A, Qureshi FA. Isolation, Characterization and Selection of Avermectin-Producing Streptomyces avermitilis Strains From Soil Samples. Jundishapur J Microbiol [Internet]. 2014/06/01. 2014 Jun;7(6):e10366–e10366. Available from: https://pubmed.ncbi.nlm.nih.gov/25371798
  • 23. Arifuzzaman M, Khatun M, Rahman H. Isolation and screening of actinomycetes from Sundarbans soil for antibacterial activity. African J Biotechnol. 2010;9:4615–9.
  • 24. Kumar N, Singh R, Mishra S, Singh A, Pachouri UC. Isolation and screening of soil Actinomycetes as source of antibiotics active against bacteria. Int J Microbiol Res. 2010 May 10;2:12–6.
Year 2022, Volume: 5 Issue: 2, 157 - 166, 30.11.2022

Abstract

References

  • 1. Kodzius R, Gojobori T. Marine metagenomics as a source for bioprospecting. Mar Genomics [Internet]. 2015;24:21–30. Available from: https://www.sciencedirect.com/science/article/pii/S1874778715300027
  • 2. Takahashi Y, Nakashima T. Actinomycetes, an Inexhaustible Source of Naturally Occurring Antibiotics. Antibiot (Basel, Switzerland) [Internet]. 2018 May 24;7(2):45. Available from: https://pubmed.ncbi.nlm.nih.gov/29795019
  • 3. de Lima Procópio RE, da Silva IR, Martins MK, de Azevedo JL, de Araújo JM. Antibiotics produced by Streptomyces. Brazilian J Infect Dis [Internet]. 2012;16(5):466–71. Available from: https://www.sciencedirect.com/science/article/pii/S1413867012001341
  • 4. Poomthongdee N, Duangmal K, Pathom-aree W. Acidophilic actinomycetes from rhizosphere soil: diversity and properties beneficial to plants. J Antibiot (Tokyo) [Internet]. 2015;68(2):106–14. Available from: https://doi.org/10.1038/ja.2014.117
  • 5. De Simeis D, Serra S. Actinomycetes: A Never-Ending Source of Bioactive Compounds—An Overview on Antibiotics Production. Vol. 10, Antibiotics . 2021.
  • 6. Hug JJ, Bader CD, Remškar M, Cirnski K, Müller R. Concepts and Methods to Access Novel Antibiotics from Actinomycetes. Antibiot (Basel, Switzerland) [Internet]. 2018 May 22;7(2):44. Available from: https://pubmed.ncbi.nlm.nih.gov/29789481
  • 7. Chater KF. Recent advances in understanding Streptomyces. F1000Research [Internet]. 2016 Nov 30;5:2795. Available from: https://pubmed.ncbi.nlm.nih.gov/27990276
  • 8. Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Klenk H-P, et al. Taxonomy, physiology, and natural products of Actinobacteria. Microbiol Mol Biol Rev. 2016;80(1):1–43.
  • 9. Tchinda RAM, Boudjeko T, Simao-Beaunoir A-M, Lerat S, Tsala É, Monga E, et al. Morphological, physiological, and taxonomic characterization of actinobacterial isolates living as endophytes of cacao pods and cacao seeds. Microbes Environ. 2016;ME15146.
  • 10. Book AJ, Lewin GR, McDonald BR, Takasuka TE, Wendt-Pienkowski E, Doering DT, et al. Evolution of high cellulolytic activity in symbiotic Streptomyces through selection of expanded gene content and coordinated gene expression. PLoS Biol. 2016;14(6):e1002475.
  • 11. Anderson AS, Wellington EM. The taxonomy of Streptomyces and related genera. Int J Syst Evol Microbiol. 2001 May;51(Pt 3):797–814.
  • 12. Williams ST. Genus Streptomyces waksman and henrici 1943. Bwergey’s Man Syst Bacteriol. 1989;4:2452–92.
  • 13. Sharma A, Gautam S, Saxena S. Streptomyces. In: Batt CA, Tortorello MLBT-E of FM (Second E, editors. Oxford: Academic Press; 2014. p. 560–6. Available from: https://www.sciencedirect.com/science/article/pii/B9780123847300003268
  • 14. Ogata S. Morphological and physiological differentiation in Streptomyces. J Agric Chem Soc Japan. 1991;
  • 15. Hain T, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E, Rainey FA. Discrimination of Streptomyces albidoflavus Strains Based on the Size and Number of 16S-23S Ribosomal DNA Intergenic Spacers. Int J Syst Evol Microbiol [Internet]. 1997;47(1):202–6. Available from: https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-47-1-202
  • 16. Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol. 1997;47(2):479–91.
  • 17. Kim B, Sahin N, Minnikin DE, Zakrzewska-Czerwinska J, Mordarski M, Goodfellow M. Classification of thermophilic streptomycetes, including the description of Streptomyces thermoalcalitolerans sp. nov. Int J Syst Bacteriol. 1999 Jan;49 Pt 1:7–17.
  • 18. Labeda DP. DNA relatedness among strains of the Streptomyces lavendulae phenotypic cluster group. Int J Syst Bacteriol [Internet]. 1993;43(4):822–5. Available from: https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-43-4-822
  • 19. Labeda DP, Lyons AJ. Deoxyribonucleic Acid Relatedness Among Species of the “Streptomyces cyaneus“ Cluster. Syst Appl Microbiol [Internet]. 1991;14(2):158–64. Available from: https://www.sciencedirect.com/science/article/pii/S072320201180295X
  • 20. Williams ST, Goodfellow M, Wellington EM, Vickers JC, Alderson G, Sneath PH, et al. A probability matrix for identification of some Streptomycetes. J Gen Microbiol. 1983 Jun;129(6):1815–30.
  • 21. Rashad FM, Fathy HM, El-Zayat AS, Elghonaimy AM. Isolation and characterization of multifunctional Streptomyces species with antimicrobial, nematicidal and phytohormone activities from marine environments in Egypt. Microbiol Res [Internet]. 2015;175:34–47. Available from: https://www.sciencedirect.com/science/article/pii/S0944501315000361
  • 22. Siddique S, Syed Q, Adnan A, Qureshi FA. Isolation, Characterization and Selection of Avermectin-Producing Streptomyces avermitilis Strains From Soil Samples. Jundishapur J Microbiol [Internet]. 2014/06/01. 2014 Jun;7(6):e10366–e10366. Available from: https://pubmed.ncbi.nlm.nih.gov/25371798
  • 23. Arifuzzaman M, Khatun M, Rahman H. Isolation and screening of actinomycetes from Sundarbans soil for antibacterial activity. African J Biotechnol. 2010;9:4615–9.
  • 24. Kumar N, Singh R, Mishra S, Singh A, Pachouri UC. Isolation and screening of soil Actinomycetes as source of antibiotics active against bacteria. Int J Microbiol Res. 2010 May 10;2:12–6.
There are 24 citations in total.

Details

Primary Language English
Subjects Chemical Engineering
Journal Section Full-length articles
Authors

Zeynep Yilmazer Hitit 0000-0001-9078-191X

Sila Eldemir 0000-0002-9491-0974

Harun Büyükeğen 0000-0001-6724-1827

Kemal Kesenci 0000-0003-0767-1029

Suna Ertunç 0000-0002-0139-7463

Bülent Akay 0000-0002-2541-490X

Publication Date November 30, 2022
Submission Date June 24, 2022
Acceptance Date October 29, 2022
Published in Issue Year 2022 Volume: 5 Issue: 2

Cite

APA Yilmazer Hitit, Z., Eldemir, S., Büyükeğen, H., Kesenci, K., et al. (2022). The Isolation of Streptomyces species in Different Soil Sources from Middle Anatolian Regions of Turkey. Journal of the Turkish Chemical Society Section B: Chemical Engineering, 5(2), 157-166.

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J. Turk. Chem. Soc., Sect. B: Chem. Eng. (JOTCSB)