Research Article
BibTex RIS Cite

First Record of Bolbitius reticulatus (Agaricales: Bolbitiaceae) in Turkey, with Nuclear ITS and LSU rDNA Sequences Data

Year 2022, Volume: 13 Issue: 1, 1 - 7, 28.04.2022

Abstract

Bolbitius reticulatus, which is pertained to European region, is reported here for the first time from Black Sea Region, north-eastern Turkey based on both morphological characters and constructed multilocus dataset (nrITS, nrLSU rDNA). A complete macro- and micro-morphological description of the species is provided along with the photographs of fresh basidiomes in natural habitat and the line drawings of its microscopic stuctures. Comparisons of the presented species with phenotypically and molecularly related taxa are elucidated and discussed in detail.

Supporting Institution

Research Fund of the Isparta University of Applied Sciences

Project Number

2021/56

References

  • Arnolds, E. (2003). Notulae ad Floram Agaricinam Neerlandicam - XXXIX. Bolbitius. Persoonia, 18: 201-214.
  • Arnolds, E. (2005). Bolbitius Fr. In: Noordeloos, M.E., Kuyper, T.W. and Vellinga, E.C. (eds) Flora Agaricina Neerlandica, Vol 6. Boca Raton: CRC Press, pp. 112–119.
  • Enderle, M., Kajan, E. and Krieglsteiner, G.J. (1985). Studien in der Gattung Bolbitius Fries. Mitt Arbeitsgem Pilzk Niederrhein, 3: 5-34.
  • Gardes, M. and Bruns, T.D. (1993). ITS primers with enhanced specificity for Basidiomycetes application to the identification of mycorrhizae and rusts. Molecular Ecology, 2: 113-118. doi: 10.1111/j.1365-294X.1993.tb00005.x
  • Hall, T.A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95-98.
  • Hausknecht, A. and Contu, M. (2006). Bolbitius demangei in Italien. Öst. Z. Pilzk., 1: 7-10.
  • Hausknecht, A., Antonín, V. and Polčák, J. (2007). A new, conspicuously coloured Bolbitius species from the Czech Republic. Czech Mycol., 59 (1): 1-9.
  • Hausknecht, A., Contu, M., Krisai-Greilhuber, I., Dähncke, R.M. and Vizzini, A. (2010). Bolbitius excoriatus (Basidiomycota, Agaricales), a new species from Spain: Öst. Z. Pilzk., 19: 122.
  • Katoh, K. and Standley, D.M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30: 772-780. doi: 10.1093/molbev/mst010
  • Kaygusuz, O., Knudsen, H., Menolli, Jr. N. and Türkekul, I. (2021a). Pluteus anatolicus (Pluteaceae, Agaricales): a new species of Pluteus sect. Celluloderma from Turkey based on both morphological and molecular evidence. Phytotaxa, 482: 240-250. doi: 10.11646/phytotaxa.482.3.2
  • Kaygusuz, O., Türkekul, I., Knudsen, H. and Menolli, Jr. N. (2021b). Volvopluteus and Pluteus section Pluteus (Agaricales: Pluteaceae) in Turkey based on morphological and molecular data. Turkish Journal of Botany, 45 (3): 224-242. doi: 10.3906/bot-2012-7
  • Malysheva, E.F., Malysheva, V.F. and Svetasheva, T.Y. (2015). Molecular phylogeny and taxonomic revision of the genus Bolbitius (Bolbitiaceae, Agaricales) in Russia. Mycol. Progress, 14: 64. doi.org/10.1007/s11557-015-1087-2
  • Matheny, P.B., Curtis, J.M., Hofstetter, V., Aime, M.C., Moncalvo, J.M., Ge, Z.W., Slot, J.C., Ammirati, J.F., Baroni, T.J., Bougher, N.L., Hughes, K.W., Lodge, D.J., Kerrigan, R.W., Seidl, M.T., Aanen, D.K., DeNitis, M., Daniele, G.M., Desjardin, D.E., Kropp, B.R., Norvell, L.L., Parker, A., Vellinga, E.C., Vilgalys, R. and Hibbett, D.S. (2006). Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98 (6): 982-995.
  • Moncalvo, J.M., Vilgalys, R., Redhead, S.A., Johnson, J.E., James, T.Y., Catherine, A.M., Hofstetter, V., Verduin, S.J., Larsson, E., Baroni, T.J., Greg, T.R., Jacobsson, S., Clémençon, H. and Miller, O.K. Jr. (2002). One hundred and seventeen clades of euagarics. Mol. Phylogenet. Evol., 23: 357-400.
  • Pegler, D.N. (1986). Agaric flora of Sri Lanka. London: Kew Bulletin Additional Series 12, pp. 514.
  • Rambaut, A. (2016). FigTree v1.4.3: Tree figure drawing tool. Website http://tree.bio.ed.ac.uk/software/figtree/ [accessed 1 June 2021].
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. and Huelsenbeck, J.P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61: 589-542. doi: 10.1093/sysbio/sys029
  • Singer, R. (1951). The Agaricales (Mushrooms) in modern taxonomy. Lilloa, 22: 1-832.
  • Singer, R. (1986). The Agaricales in Modern Taxonomy, 4th ed. Germany: Sven Koeiltz Scientific Books, pp. 981.
  • Stamatakis, A. (2014). RAxML version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics, 30: 1312-1313. doi: 10.1093/bioinformatics/btu033
  • Tóth, A., Hausknecht, A., Krisai-Greilhuber, I., Papp, T., Vágvölgyi, C. and Nagy, L.G. (2013). Iteratively refined guide trees help improving alignment and phylogenetic inference in the mushroom family Bolbitiaceae. PLoS ONE, 8: e56143. doi:10.1371/journal.pone.0056143
  • Vilgalys, R. and Hester, M. (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology, 172: 4238-4246.
  • Watling, R. (1982). British Fungus Flora. Agarics and Boleti 3. Bolbitiaceae: Agrocybe, Bolbitius and Conocybe. Edinburgh: HMSO.
  • White, T.J., Bruns, T., Lee, S. and Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. and White, T.J. (eds). PCR Protocols: A Guide to Methods and Applications. New York: Academic Press, pp. 315-322. doi: 10.1016/B978-0-12-372180-8.50042-1

Bolbitius reticulatus'un (Agaricales: Bolbitiaceae) Nükleer ITS ve LSU rDNA Sekans Verileriyle Türkiye'deki İlk Kaydı

Year 2022, Volume: 13 Issue: 1, 1 - 7, 28.04.2022

Abstract

Avrupa bölgesine ait olan Bolbitius reticulatus, hem morfolojik karakterlere hem de yapılandırılmış çok lokuslu veri setine (nrITS, nrLSU rDNA) dayalı olarak, Türkiye'nin kuzey doğusundaki Karadeniz Bölgesi'nden ilk kez rapor edilmektedir. Türün makro ve mikro morfolojik deskripsiyonu, doğal ortamdaki taze bazidiomların fotoğrafları ve mikroskobik özelliklerinin çizimleri eşliğinde sağlanmaktadır. Sunulan türün fenotipik ve moleküler olarak ilişkili taksonlarla karşılaştırılması aydınlatılmış ve detaylı olarak tartışılmıştır.

Project Number

2021/56

References

  • Arnolds, E. (2003). Notulae ad Floram Agaricinam Neerlandicam - XXXIX. Bolbitius. Persoonia, 18: 201-214.
  • Arnolds, E. (2005). Bolbitius Fr. In: Noordeloos, M.E., Kuyper, T.W. and Vellinga, E.C. (eds) Flora Agaricina Neerlandica, Vol 6. Boca Raton: CRC Press, pp. 112–119.
  • Enderle, M., Kajan, E. and Krieglsteiner, G.J. (1985). Studien in der Gattung Bolbitius Fries. Mitt Arbeitsgem Pilzk Niederrhein, 3: 5-34.
  • Gardes, M. and Bruns, T.D. (1993). ITS primers with enhanced specificity for Basidiomycetes application to the identification of mycorrhizae and rusts. Molecular Ecology, 2: 113-118. doi: 10.1111/j.1365-294X.1993.tb00005.x
  • Hall, T.A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95-98.
  • Hausknecht, A. and Contu, M. (2006). Bolbitius demangei in Italien. Öst. Z. Pilzk., 1: 7-10.
  • Hausknecht, A., Antonín, V. and Polčák, J. (2007). A new, conspicuously coloured Bolbitius species from the Czech Republic. Czech Mycol., 59 (1): 1-9.
  • Hausknecht, A., Contu, M., Krisai-Greilhuber, I., Dähncke, R.M. and Vizzini, A. (2010). Bolbitius excoriatus (Basidiomycota, Agaricales), a new species from Spain: Öst. Z. Pilzk., 19: 122.
  • Katoh, K. and Standley, D.M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30: 772-780. doi: 10.1093/molbev/mst010
  • Kaygusuz, O., Knudsen, H., Menolli, Jr. N. and Türkekul, I. (2021a). Pluteus anatolicus (Pluteaceae, Agaricales): a new species of Pluteus sect. Celluloderma from Turkey based on both morphological and molecular evidence. Phytotaxa, 482: 240-250. doi: 10.11646/phytotaxa.482.3.2
  • Kaygusuz, O., Türkekul, I., Knudsen, H. and Menolli, Jr. N. (2021b). Volvopluteus and Pluteus section Pluteus (Agaricales: Pluteaceae) in Turkey based on morphological and molecular data. Turkish Journal of Botany, 45 (3): 224-242. doi: 10.3906/bot-2012-7
  • Malysheva, E.F., Malysheva, V.F. and Svetasheva, T.Y. (2015). Molecular phylogeny and taxonomic revision of the genus Bolbitius (Bolbitiaceae, Agaricales) in Russia. Mycol. Progress, 14: 64. doi.org/10.1007/s11557-015-1087-2
  • Matheny, P.B., Curtis, J.M., Hofstetter, V., Aime, M.C., Moncalvo, J.M., Ge, Z.W., Slot, J.C., Ammirati, J.F., Baroni, T.J., Bougher, N.L., Hughes, K.W., Lodge, D.J., Kerrigan, R.W., Seidl, M.T., Aanen, D.K., DeNitis, M., Daniele, G.M., Desjardin, D.E., Kropp, B.R., Norvell, L.L., Parker, A., Vellinga, E.C., Vilgalys, R. and Hibbett, D.S. (2006). Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98 (6): 982-995.
  • Moncalvo, J.M., Vilgalys, R., Redhead, S.A., Johnson, J.E., James, T.Y., Catherine, A.M., Hofstetter, V., Verduin, S.J., Larsson, E., Baroni, T.J., Greg, T.R., Jacobsson, S., Clémençon, H. and Miller, O.K. Jr. (2002). One hundred and seventeen clades of euagarics. Mol. Phylogenet. Evol., 23: 357-400.
  • Pegler, D.N. (1986). Agaric flora of Sri Lanka. London: Kew Bulletin Additional Series 12, pp. 514.
  • Rambaut, A. (2016). FigTree v1.4.3: Tree figure drawing tool. Website http://tree.bio.ed.ac.uk/software/figtree/ [accessed 1 June 2021].
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. and Huelsenbeck, J.P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61: 589-542. doi: 10.1093/sysbio/sys029
  • Singer, R. (1951). The Agaricales (Mushrooms) in modern taxonomy. Lilloa, 22: 1-832.
  • Singer, R. (1986). The Agaricales in Modern Taxonomy, 4th ed. Germany: Sven Koeiltz Scientific Books, pp. 981.
  • Stamatakis, A. (2014). RAxML version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics, 30: 1312-1313. doi: 10.1093/bioinformatics/btu033
  • Tóth, A., Hausknecht, A., Krisai-Greilhuber, I., Papp, T., Vágvölgyi, C. and Nagy, L.G. (2013). Iteratively refined guide trees help improving alignment and phylogenetic inference in the mushroom family Bolbitiaceae. PLoS ONE, 8: e56143. doi:10.1371/journal.pone.0056143
  • Vilgalys, R. and Hester, M. (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology, 172: 4238-4246.
  • Watling, R. (1982). British Fungus Flora. Agarics and Boleti 3. Bolbitiaceae: Agrocybe, Bolbitius and Conocybe. Edinburgh: HMSO.
  • White, T.J., Bruns, T., Lee, S. and Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. and White, T.J. (eds). PCR Protocols: A Guide to Methods and Applications. New York: Academic Press, pp. 315-322. doi: 10.1016/B978-0-12-372180-8.50042-1
There are 24 citations in total.

Details

Primary Language English
Journal Section RESEARCH ARTICLE
Authors

Oğuzhan Kaygusuz 0000-0003-3455-2965

Project Number 2021/56
Publication Date April 28, 2022
Published in Issue Year 2022 Volume: 13 Issue: 1

Cite

APA Kaygusuz, O. (2022). First Record of Bolbitius reticulatus (Agaricales: Bolbitiaceae) in Turkey, with Nuclear ITS and LSU rDNA Sequences Data. Mantar Dergisi, 13(1), 1-7. https://doi.org/10.30708/mantar.1000098

The works submitted to our journals are first judged grammatically. After this phase, articles are sent two reviewers. If necessary, the third reviewer is assessed. In the publication of works, a decision is made by evaluating the level of contribution to science and readers within the criteria specified in the writing rules. Reviewers are requested to submit their assessments within 30 days at the latest. The reviewers' evaluations and the answers to these evaluations are reviewed by the editor and it is decided whether the work will be published or not.

International Peer Reviewed Journal

The journal doesn’t have APC or any submission charges

Creative Commons Lisansı
This work is licensed under a Creative Commons Attribution 4.0 License