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The pathogenes potential of Archaea

Year 2018, Volume: 2 Issue: 2, 131 - 135, 02.07.2018
https://doi.org/10.30565/medalanya.424318

Abstract











When the Archaea domain was discovered at the end of the 1970s, they were known only as extremophiles microorganisms. But today they are known to be present in various parts of the human body such as gastrointestinal system, mouth, skin and urogenital after microbiota studies. Archaea are not yet defined as pathogenic, but are associated with many diseases such as bowel infections, colon cancer, obesity, oral infections. In this paper , it was aimed to give information about the relationship between Archaea and infections. 

References

  • 1. Nicol, GW.; Prosser, JI. Ecology of Archaea. In: Oxford Bibliographies in Ecology.New York: Oxford University Press, 2016 doi: 10.1093/OBO/9780199830060-0160.
  • 2. Eme, Laura; Doolittle, W. F.. Archaea. Current Biology. 2015; 25(19): 851-855.
  • 3. Albers, S. V., Forterre, P., Prangishvili, D., Schleper, C. The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries. Nature Reviews Microbiology, 2013; 11(10): 713.
  • 4. Albers, S; Eichler, J.; Aebi M. Archaea. Essentials of Glycobiology [Internet]. 3rd edition Cold Spring Harbor Laboratory Press;La Jolla, California. 2017; chapter 22.
  • 5. Cavicchioli, R. Archaea—timeline of the third domain. Nature Reviews Microbiology, 2011; 9(1): 51.
  • 6. Dridi, B., Raoult, D., Drancourt, M. Archaea as emerging organisms in complex human microbiomes. Anaerobe, 2011;17(2): 56-63.
  • 7. Huynh, H. T., Verneau, J., Levasseur, A., Drancourt, M., Aboudharam, G. Bacteria and archaea paleomicrobiology of the dental calculus: a review. Molecular oral microbiology, 2016; 31(3): 234-242.
  • 8. Shrestha, N., Chilkoor, G., Vemuri, B., Rathinam, N., Sani, R. K., Gadhamshetty, V. (2018). Extremophiles for microbial-electrochemistry applications: a critical review. Bioresource technology. [Epub ahead of print] doi.org/10.1016/j.biortech.2018.01.151
  • 9. Probst, A. J., Auerbach, A. K., Moissl-Eichinger, C. Archaea on human skin. PloS one, 2013, 8(6), e65388.
  • 10. Louis, P., Hold, G. L., Flint, H. J. The gut microbiota, bacterial metabolites and colorectal cancer. Nature Reviews Microbiology, 2014; 12(10): 661.
  • 11. Garcia-Gutierrez, E., Mayer, M. J., Cotter, P. D., Narbad, A. Gut microbiota as a source of novel antimicrobials. Gut microbes, 2018,1-57 [Epub ahead of print] doi.org/10.1080/19490976.2018.1455790.
  • 12. Moissl-Eichinger, C., Pausan, M., Taffner, J., Berg, G., Bang, C., Schmitz, R. A. Archaea Are Interactive Components of Complex Microbiomes. Trends in microbiology. 2017; 26 (1): 70-85.
  • 13. van de Pol, J. A., van Best, N., Mbakwa, C. A., Thijs, C., Savelkoul, P. H., Arts, I. C., et al. Gut colonization by methanogenic archaea is associated with organic dairy consumption in children. Frontiers in microbiology, 2017; 8, 355.
  • 14. Pike, L. J., Forster, S. C.A new piece in the microbiome puzzle. Nature, 2018:(16):1
  • 15. Haq, K., Jia, Y., & Krishnan, L. Archaeal lipid vaccine adjuvants for induction of cell-mediated immunity. Expert review of vaccines, 2016; 15(12): 1557-1566.
  • 16. Li, Z., Zhang, L., Sun, W., Ding, Q., Hou, Y., Xu, Y.. Archaeosomes with encapsulated antigens for oral vaccine delivery. Vaccine, 2011; 29(32): 5260-5266.
  • 17. Lecours, P. B., Marsolais, D., Cormier, Y., Berberi, M., Haché, C., Bourdages, R., Duchaine, C. Increased prevalence of Methanosphaera stadtmanae in inflammatory bowel diseases. PLoS One,2014; 9(2): e87734.
  • 18. de Macario, E. C., Macario, A. J. Methanogenic archaea in health and disease: a novel paradigm of microbial pathogenesis. International Journal of Medical Microbiology, 2009; 299(2): 99-108.
  • 19. Mbakwa, C. A., Penders, J., Savelkoul, P. H., Thijs, C., Dagnelie, P. C., Mommers, M., Arts, I. C. Gut colonization with Methanobrevibacter smithii is associated with childhood weight development. Obesity, 2015; 23(12): 2508-2516.
  • 20. Nguyen‐Hieu, T., Khelaifia, S., Aboudharam, G., Drancourt, M. Methanogenic archaea in subgingival sites: a review. Apmis, 2013; 121(6): 467-477.
  • 21. Bang, C., Schmitz, R. A. Archaea associated with human surfaces: not to be underestimated. FEMS microbiology reviews, 2015;39(5): 631-648.
  • 22. Drancourt, M., Nkamga, V. D., Lakhe, N. A., Régis, J. M., Dufour, H., Fournier, P. E. et al. Evidence of archaeal methanogens in brain abscess. Clinical Infectious Diseases, 2017; 65(1): 1-5.
  • 23. Oxley, A., Lanfranconi, M. P., Würdemann, D., Ott, S., Schreiber, S., McGenity, T. J.,et al. Halophilic archaea in the human intestinal mucosa. Environmental microbiology, 2010; 12(9): 2398-2410.
  • 24. Khelaifia, S., Raoult, D. Haloferax massiliensis sp. nov., the first human-associated halophilic archaea. New microbes and new infections, 2016, 12, 96-98.
  • 25. Eme, L., Spang, A., Lombard, J., Stairs, C. W., Ettema, T. J. Archaea and the origin of eukaryotes. Nature Reviews Microbiology. 2017; 15(12): 711.
  • 26. Da Cunha, V., Gaia, M., Gadelle, D., Nasir, A., Forterre, P. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. PLoS genetics, 2017;13(6): e1006810.
  • 27. Zaremba-Niedzwiedzka, K., Caceres, E. F., Saw, J. H., Bäckström, D., Juzokaite, L., Vancaester, E., et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature,2017; 541(7637): 353.
  • 28. Spang, A., Eme, L., Saw, J. H., Caceres, E. F., Zaremba-Niedzwiedzka, K., Lombard, J.,et al. Asgard archaea are the closest prokaryotic relatives of eukaryotes. PLoS genetics, 2018; 14(3): e1007080.
  • 29. Fuchsman, C. A., Collins, R. E., Rocap, G., Brazelton, W. J. Effect of the environment on horizontal gene transfer between bacteria and archaea. PeerJ, 2017, 5, e3865.
  • 30. Naor, A., Lapierre, P., Mevarech, M., Papke, R.T. Gophna,U. Low species barriers in halophilic archaea and the formation of recombinant hybrids. Curr. Biol 2012; 22, 1444–1448.
  • 31. Soucy, S. M., Huang, J., Gogarten, J. P. Horizontal gene transfer: building the web of life. Nature Reviews Genetics, 2015; 16(8): 472.
  • 32. Eckburg, P. B., Lepp, P. W., & Relman, D. A. Archaea and their potential role in human disease. Infection and immunity, 2003; 71(2): 591-596.
  • 33. Koonin, E. V. Horizontal gene transfer: essentiality and evolvability in prokaryotes, and roles in evolutionary transitions. F1000Research, 2016; 5,1-9.

Arkelerin (Archaea) Patojen Olma Potansiyeli

Year 2018, Volume: 2 Issue: 2, 131 - 135, 02.07.2018
https://doi.org/10.30565/medalanya.424318

Abstract











Archaea domaini 1970’li yılların sonunda keşfedildiklerinde, sadece zorlayıcı çevre şartlarında yaşayan mikroorganizmalar olarak biliniyorlardı. Ancak mikrobiyota çalışmaları sonrasında insan vücudunda gastrointestinal sistem, ağız, deri ve ürogenital sistem gibi çeşitli bölgelerde bulundukları öğrenilmiş oldu. Archaea’ler henüz patojen olarak tanımlanmasalar da, barsak enfeksiyonları, kolon kanseri, obezite, oral enfeksiyonlar gibi pek çok hastalıkla ilişkilendirilmektedir. Bu çalışmada Archaea’lerin enfeksiyonlar ile ilişkisi hakkında bilgi verilmesi amaçlanmıştır. 

References

  • 1. Nicol, GW.; Prosser, JI. Ecology of Archaea. In: Oxford Bibliographies in Ecology.New York: Oxford University Press, 2016 doi: 10.1093/OBO/9780199830060-0160.
  • 2. Eme, Laura; Doolittle, W. F.. Archaea. Current Biology. 2015; 25(19): 851-855.
  • 3. Albers, S. V., Forterre, P., Prangishvili, D., Schleper, C. The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries. Nature Reviews Microbiology, 2013; 11(10): 713.
  • 4. Albers, S; Eichler, J.; Aebi M. Archaea. Essentials of Glycobiology [Internet]. 3rd edition Cold Spring Harbor Laboratory Press;La Jolla, California. 2017; chapter 22.
  • 5. Cavicchioli, R. Archaea—timeline of the third domain. Nature Reviews Microbiology, 2011; 9(1): 51.
  • 6. Dridi, B., Raoult, D., Drancourt, M. Archaea as emerging organisms in complex human microbiomes. Anaerobe, 2011;17(2): 56-63.
  • 7. Huynh, H. T., Verneau, J., Levasseur, A., Drancourt, M., Aboudharam, G. Bacteria and archaea paleomicrobiology of the dental calculus: a review. Molecular oral microbiology, 2016; 31(3): 234-242.
  • 8. Shrestha, N., Chilkoor, G., Vemuri, B., Rathinam, N., Sani, R. K., Gadhamshetty, V. (2018). Extremophiles for microbial-electrochemistry applications: a critical review. Bioresource technology. [Epub ahead of print] doi.org/10.1016/j.biortech.2018.01.151
  • 9. Probst, A. J., Auerbach, A. K., Moissl-Eichinger, C. Archaea on human skin. PloS one, 2013, 8(6), e65388.
  • 10. Louis, P., Hold, G. L., Flint, H. J. The gut microbiota, bacterial metabolites and colorectal cancer. Nature Reviews Microbiology, 2014; 12(10): 661.
  • 11. Garcia-Gutierrez, E., Mayer, M. J., Cotter, P. D., Narbad, A. Gut microbiota as a source of novel antimicrobials. Gut microbes, 2018,1-57 [Epub ahead of print] doi.org/10.1080/19490976.2018.1455790.
  • 12. Moissl-Eichinger, C., Pausan, M., Taffner, J., Berg, G., Bang, C., Schmitz, R. A. Archaea Are Interactive Components of Complex Microbiomes. Trends in microbiology. 2017; 26 (1): 70-85.
  • 13. van de Pol, J. A., van Best, N., Mbakwa, C. A., Thijs, C., Savelkoul, P. H., Arts, I. C., et al. Gut colonization by methanogenic archaea is associated with organic dairy consumption in children. Frontiers in microbiology, 2017; 8, 355.
  • 14. Pike, L. J., Forster, S. C.A new piece in the microbiome puzzle. Nature, 2018:(16):1
  • 15. Haq, K., Jia, Y., & Krishnan, L. Archaeal lipid vaccine adjuvants for induction of cell-mediated immunity. Expert review of vaccines, 2016; 15(12): 1557-1566.
  • 16. Li, Z., Zhang, L., Sun, W., Ding, Q., Hou, Y., Xu, Y.. Archaeosomes with encapsulated antigens for oral vaccine delivery. Vaccine, 2011; 29(32): 5260-5266.
  • 17. Lecours, P. B., Marsolais, D., Cormier, Y., Berberi, M., Haché, C., Bourdages, R., Duchaine, C. Increased prevalence of Methanosphaera stadtmanae in inflammatory bowel diseases. PLoS One,2014; 9(2): e87734.
  • 18. de Macario, E. C., Macario, A. J. Methanogenic archaea in health and disease: a novel paradigm of microbial pathogenesis. International Journal of Medical Microbiology, 2009; 299(2): 99-108.
  • 19. Mbakwa, C. A., Penders, J., Savelkoul, P. H., Thijs, C., Dagnelie, P. C., Mommers, M., Arts, I. C. Gut colonization with Methanobrevibacter smithii is associated with childhood weight development. Obesity, 2015; 23(12): 2508-2516.
  • 20. Nguyen‐Hieu, T., Khelaifia, S., Aboudharam, G., Drancourt, M. Methanogenic archaea in subgingival sites: a review. Apmis, 2013; 121(6): 467-477.
  • 21. Bang, C., Schmitz, R. A. Archaea associated with human surfaces: not to be underestimated. FEMS microbiology reviews, 2015;39(5): 631-648.
  • 22. Drancourt, M., Nkamga, V. D., Lakhe, N. A., Régis, J. M., Dufour, H., Fournier, P. E. et al. Evidence of archaeal methanogens in brain abscess. Clinical Infectious Diseases, 2017; 65(1): 1-5.
  • 23. Oxley, A., Lanfranconi, M. P., Würdemann, D., Ott, S., Schreiber, S., McGenity, T. J.,et al. Halophilic archaea in the human intestinal mucosa. Environmental microbiology, 2010; 12(9): 2398-2410.
  • 24. Khelaifia, S., Raoult, D. Haloferax massiliensis sp. nov., the first human-associated halophilic archaea. New microbes and new infections, 2016, 12, 96-98.
  • 25. Eme, L., Spang, A., Lombard, J., Stairs, C. W., Ettema, T. J. Archaea and the origin of eukaryotes. Nature Reviews Microbiology. 2017; 15(12): 711.
  • 26. Da Cunha, V., Gaia, M., Gadelle, D., Nasir, A., Forterre, P. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. PLoS genetics, 2017;13(6): e1006810.
  • 27. Zaremba-Niedzwiedzka, K., Caceres, E. F., Saw, J. H., Bäckström, D., Juzokaite, L., Vancaester, E., et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature,2017; 541(7637): 353.
  • 28. Spang, A., Eme, L., Saw, J. H., Caceres, E. F., Zaremba-Niedzwiedzka, K., Lombard, J.,et al. Asgard archaea are the closest prokaryotic relatives of eukaryotes. PLoS genetics, 2018; 14(3): e1007080.
  • 29. Fuchsman, C. A., Collins, R. E., Rocap, G., Brazelton, W. J. Effect of the environment on horizontal gene transfer between bacteria and archaea. PeerJ, 2017, 5, e3865.
  • 30. Naor, A., Lapierre, P., Mevarech, M., Papke, R.T. Gophna,U. Low species barriers in halophilic archaea and the formation of recombinant hybrids. Curr. Biol 2012; 22, 1444–1448.
  • 31. Soucy, S. M., Huang, J., Gogarten, J. P. Horizontal gene transfer: building the web of life. Nature Reviews Genetics, 2015; 16(8): 472.
  • 32. Eckburg, P. B., Lepp, P. W., & Relman, D. A. Archaea and their potential role in human disease. Infection and immunity, 2003; 71(2): 591-596.
  • 33. Koonin, E. V. Horizontal gene transfer: essentiality and evolvability in prokaryotes, and roles in evolutionary transitions. F1000Research, 2016; 5,1-9.
There are 33 citations in total.

Details

Primary Language Turkish
Subjects Clinical Sciences
Journal Section Review
Authors

Nurmehir Baltacı 0000-0001-7054-8889

Ayşe Kalkancı This is me 0000-0003-0961-7325

Publication Date July 2, 2018
Submission Date May 16, 2018
Acceptance Date May 17, 2018
Published in Issue Year 2018 Volume: 2 Issue: 2

Cite

Vancouver Baltacı N, Kalkancı A. Arkelerin (Archaea) Patojen Olma Potansiyeli. Acta Med. Alanya. 2018;2(2):131-5.

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