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Moleküler Markörlerin Meyve Islahında Kullanım Alanları

Year 2015, Volume: 2 Issue: 1, 49 - 59, 21.01.2015

Abstract

1990'lı yıllardan itibaren geliştirilen moleküler markörler, günümüzde tarımsal üretimde ıslah çalışmalarında önemli bir yer almaktadır. Bugüne kadar moleküler markörler konusunda yapılan çalışmalar sayesinde, birçok canlı türünde olduğu gibi ekonomik öneme sahip bitki türlerinin genetik özellikleri ve kalıtımı hakkında önemli bilgilere kısa zaman içinde ulaşılabilme imkânına sahip olunmuştur. Bu bilgiler, özellikle ıslahın uzun zaman gerektirdiği meyve türlerinde, ıslah sürelerinin kısaltılmasına ve dolayısıyla da alan ve iş gücünden tasarruf sağlanmasına neden olmuştur. Aynı zamanda, meyvecilikte moleküler markörler kullanılarak üretilen bilgilerin meyve yetiştiriciliği ve ıslahı hakkında çalışma yapan araştırmacılar tarafından kullanılmasıyla meyvecilikte daha kaliteli ve verimli çeşitlerin geliştirilmesi sağlanacaktır. Bu derlemede, moleküler markör tekniklerinin meyvecilikte kullanımlarıyla üretilen bilgiler özetlenmektedir.

References

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  • Agarwal M, Shrivastava N, Padh H, 2008. Advances in Molecular Marker Techniques and Their Applications in Plant Sciences. Plant Cell Reports 27(4): 617-631.
  • Aka Kaçar YA, 2004. Moleküler Markörlerin Prunus Türlerinde Kullanımı. Alatarım, 3 (2): 15-22.
  • Aksu M, Sarısu HC, Kaymak S, Öztürk Y, Gür İ, Koçal H, 2012. Bazı Yabani Vişne (Prunus cerasus L.) Tiplerinin RAPD Tekniği ile Moleküler Karakterizasyonu. Tarım Bilimleri Araştırma Dergisi 5 (1): 78-81.
  • Andersen JR, Lübberstedt T, 2003. Functional Markers in Plants. Trends in Plant Science 8(11), 554-560.
  • Asins MJ, 2002. Present and Future of Quantitative Trait Locus Analysis in Plant Breeding. Plant Breeding 121:281-291.
  • Baird WV, Ballard RE, Rajapakse S, Abbott, AG, 1996. Progress in Prunus Mapping and Application of Molecular Markers to Germplasm Improvement. HortScience 7:1099-1106.
  • Bayazit S, Imrak B, Küden A, Kemal GM. 2011. RAPD Analysis of Genetic Relatedness Among Selected Quince (Cydonia oblonga Mill.) Accessions From Different Parts of Turkey. Horticultural Science (Prague), 38, 134-141.
  • Burak M, Ayanoğlu H, Akçay ME, Kocataş H, Öz MH, Demirtaş İ, Akpınar AE, Aslantaş Ş, Soydam S, Yüksel C, Aygün H, Bakır M, Yılmaz F, Şahin N, Tan N, Karadoğan B, Vurgun H, Doğan A, Öztürk G, Pektaş M, Küden AB, Bayazit S, Çömlekçioğlu S, Kazan K, Ergül A, 2007. Bazı Meyve Türlerine Ait Gen Kaynaklarının High-Throughput Moleküler Yöntemlerle Tanımlanması-I, Türkiye V. Ulusal Bahçe Bitkileri Kongresi, Cilt 1, Meyvecilik 60-65, ERZURUM.
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  • Chagne D, Carlisle CM, Blond C, Volz RK, Whitworth CJ, Oraguzie NC, Crowhurst RN, Allan AC, Espley RV, Hellens RP, Gardiner SE, 2007. Mapping A Candidate Gene (MdMYB10) for Red Flesh and Foliage Colour in Apple. Biomedcentral (BMC) Genomics 8, 212.
  • Cheng FS, Weeden NF, Brown SK, 1996. Identification of Co-Dominant RAPD Markers Tightly Linked to Fruit Skin Colour in Apple. Theoretical and Applied Genetics 93:222-227.
  • Çalışkan M, 2005. Rapd Analizi ile Güllerde (Rosa spp.) Genetik Tanımlama. Ankara Üniversitesi, Fen Bilimleri Enstitüsü, Doktora Tezi, ANKARA.
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  • Eduardo I, Chietera G, Pirona R, Pacheco I, Troggio M, Banchi E, Bassi D, Rossini L, Vecchietti A, Pozzi C. 2013. Genetic Dissection of Aroma Volatile Compounds From the Essential Oil of Peach Fruit: QTL Analysis and Identification of Candidate Genes Using Dense SNP Maps. Tree Genetics & Genomes 9(1), 189-204.
  • Ercişli S, Ağar G, Yıldırım N, Duralija B, Vokurka A, Karlıdağ H, 2011. Genetic Diversity in Wild Sweet Cherries (Prunus avium) in Turkey Revealed by SSR Markers. Genetics and Molecular Research 10 (2): 1211-1219.
  • Federici CT, Fang DQ, Scora RW, Roose ML, 1998. Phylogenetic Relationships within the Genus Citrus (Rutaceae) and Related Genera as Revealed by RFLP and RAPD Analysis. Theoretical and Applied Genetics 96: 812-822.
  • Garkava‐Gustavsson L, Kolodinska Brantestam A, Sehic J, Nybom H, 2008. Molecular Characterisation of Indigenous Swedish Apple Cultivars Based on SSR and S‐allele Analysis. Hereditas, 145(3), 99-112.
  • Geldermann H, 1975. Investigations on Inheritance of Quantitative Characters in Animals by Gene Markers I. Methods. Theoretical and Applied Genetics 46(7), 319-330.
  • Gökırmak T, Mahlenbacher SA, Bassil NV, 2004. Investigation of Genetic Diversity Among European Hazelnut ( Corylus avellena) Cultivars Using SSR Markers. VI. International Congress on Hazelnut, June14. 2004 Spain.
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  • Gür E, Şeker M, 2012. Beyaz Nektarin Tiplerinin AFLP Moleküler Markör Polimorfizminin Prunus Cinsine Giren Önemli Türlerle Karşılaştırılması. Journal of Agricultural Faculty 26(2), 29-36.
  • Joshi SP, Prabhakar K, Ranjekar PK, Gupta VS, 1999. Molecular Markers in Plant Genome Analysis. Current Science Vol. 77, No:2.
  • Karp A, Edwards KJ, Bruford M, Funk S, Vosman B, Morgante M, Seberg O, Kremer A, Boursot P, Arctander P, Tautz D, Hewıtt GM, 1997. Molecular Technologies for Biodiversity Evaluation: Opportunities and Challenges. Nature Biotechnology. Vol. 15:625-628.
  • Kaymak S, Kaçal E, Öztürk Y, 2013. Screening Breeding Apple Progenies with vf Apple Scab (Venturia inaequalis (cke.) wint.) Disease Resistance Gene Specific Molecular Markers. Integrated Protection of Fruit Crops IOBC-WPRS Bulletin Vol.91, 361-365pp.
  • Kaymak S, Şahin-Çevik M, Çevik B, 2009. Elma Genetik Kaynaklarının Vf Kara Leke (Venturia inaequalis (Cke.) Wint.) Dayanıklılık Genine Spesifik Moleküler Markörlerle Taranması, Türkiye III. Bitki Koruma Kongresi Bildirileri, 15-18 Temmuz 2009, s:230.
  • Kesawat MS, Das BK, 2009. Molecular Markers: It's Application in Crop Improvement. Journal of Crop Science and Biotechnology 12 (4),169 -181.
  • Klagges C, Campoy JA, Quero-García J, Guzman A, Mansur L, Gratacos E, Silva H, Rosyara UR, Iezzoni A, Meisel LA, Dirlewanger E, 2013. Construction and Comparative Analyses of Highly Dense Linkage Maps of Two Sweet Cherry Intra-Specific Progenies of Commercial Cultivars. PloS one 8(1), e54743.
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  • Martínez-García PJ, Parfitt DE, Ogundiwin EA, Fass J, Chan HM, Ahmad R, Lurie S, Dandekar A, Gradziel TM, Crisosto CH, 2013. High Density SNP Mapping and QTL Analysis for Fruit Quality Characteristics in Peach (Prunus persica L.). Tree Genetics & Genomes, 9(1), 19-36.
  • Melchinger AE, 1990. Use of Molecular Markers in Breeding for Oligogenic Disease Resistance. Plant Breeding 104:1-19.
  • Mullis KB, 1987. Process for Amplifying Nucleic Acid Sequences. U.S. Patent No: 4,683,202.
  • Olmstead JW, Sebolt AM, Cabrera A, Sooriyapathirana SS, Hammar S, Iriarte G, Wang D, Chen CY, Knaap E, Iezzoni AF, 2008. Construction of an Intra-Specific Sweet Cherry (Prunus avium L.) Genetic Linkage Map and Synteny Analysis with the Prunus Reference Map. Tree Genetics & Genomes DOI 10.1007/s11295-008-0161-1.
  • Öz MH, Aygün H, Soydam S, Çukadar K, Bakır M, Yılmaz F, Ünlü HM, Karadoğan B, Vurgun H, Ergül A, 2007. Doğu Anadolu Erik ve Kiraz Gen Kaynaklarının SSR’a Dayalı Moleküler Analizi. V. Bahçe Bitkileri Kongresi, Erzurum.
  • Pinar H., Unlu M, Ercisli S, Uzun A, Bircan M, Yilmaz KU, Agar G, 2013. Determination of Genetic Diversity Among Wild Grown Apricots from Sakit Valley in Turkey Using SRAP Markers. Journal of Applied Botany and Food Quality, 86(1).
  • Rafalski JA, Tingey SV, 1993. Genetic Diagnostics in Plant Breeding, RAPDs, Microsatellites and Machines. TIG, 9(8); 275-280.
  • Ridout CR, Donini P, 1999. Use of AFLP in Cereals Research. Trends in Plant Science. 4:76-79.
  • Roose ML, 1998. Phylogenetic Relationships Within the Genus Citrus (Rutaceae) and Related Genera as Revealed by RFLP and RAPD Analysis. Theoretical and Applied Genetics 96: 812-822.
  • Soriano JM, Vera-Ruiz EM, Vilanova S, Martínez-Calvo J, Llácer G, Badenes ML, Romero C, 2008. Identification and Mapping of A Locus Conferring Plum Pox Virus Resistance in Two Apricot-Improved Linkage Maps. Tree Genetics & Genomes, 4(3), 391-402.
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Use of Moleculer Markers in Fruit Breeding

Year 2015, Volume: 2 Issue: 1, 49 - 59, 21.01.2015

Abstract

Molecular markers have been developed since 1990's and they currently have an important place in breeding studies in agricultural production. As in many other organisms, studies related with molecular markers provide valuable and reliable information about genetics and inheritance of many economically important traits in various plant species in a short time. This information has become especially useful for fruit crops requiring much longer time for breeding by shortening of breeding period and saving space and labor. At the same time, use of information generated using molecular markers by researchers in fruit production and breeding will contribute significantly to the development of higher quality and higher yielding fruit varieties. In this review, information generated by the use of molecular markers techniques in fruit breeding was summarized

References

  • Abedian M, Talebi M, Golmohammdi HR, Sayed-Tabatabaei BE, 2012. Genetic Diversity and Population Structure of Mahaleb Cherry (Prunus mahaleb L.) and Sweet Cherry (Prunus avium L.) Using SRAP Markers. Biochemical Systematics and Ecology 40:112-117.
  • Agarwal M, Shrivastava N, Padh H, 2008. Advances in Molecular Marker Techniques and Their Applications in Plant Sciences. Plant Cell Reports 27(4): 617-631.
  • Aka Kaçar YA, 2004. Moleküler Markörlerin Prunus Türlerinde Kullanımı. Alatarım, 3 (2): 15-22.
  • Aksu M, Sarısu HC, Kaymak S, Öztürk Y, Gür İ, Koçal H, 2012. Bazı Yabani Vişne (Prunus cerasus L.) Tiplerinin RAPD Tekniği ile Moleküler Karakterizasyonu. Tarım Bilimleri Araştırma Dergisi 5 (1): 78-81.
  • Andersen JR, Lübberstedt T, 2003. Functional Markers in Plants. Trends in Plant Science 8(11), 554-560.
  • Asins MJ, 2002. Present and Future of Quantitative Trait Locus Analysis in Plant Breeding. Plant Breeding 121:281-291.
  • Baird WV, Ballard RE, Rajapakse S, Abbott, AG, 1996. Progress in Prunus Mapping and Application of Molecular Markers to Germplasm Improvement. HortScience 7:1099-1106.
  • Bayazit S, Imrak B, Küden A, Kemal GM. 2011. RAPD Analysis of Genetic Relatedness Among Selected Quince (Cydonia oblonga Mill.) Accessions From Different Parts of Turkey. Horticultural Science (Prague), 38, 134-141.
  • Burak M, Ayanoğlu H, Akçay ME, Kocataş H, Öz MH, Demirtaş İ, Akpınar AE, Aslantaş Ş, Soydam S, Yüksel C, Aygün H, Bakır M, Yılmaz F, Şahin N, Tan N, Karadoğan B, Vurgun H, Doğan A, Öztürk G, Pektaş M, Küden AB, Bayazit S, Çömlekçioğlu S, Kazan K, Ergül A, 2007. Bazı Meyve Türlerine Ait Gen Kaynaklarının High-Throughput Moleküler Yöntemlerle Tanımlanması-I, Türkiye V. Ulusal Bahçe Bitkileri Kongresi, Cilt 1, Meyvecilik 60-65, ERZURUM.
  • Cantini C, Iezzoni AF, Lamboy W, Boritzki M, Struss D, 2001. DNA Fingerprinting of Tetraploid Cherry Germplasm Using Simple Sequence Repeats. Journal of the American Society for Horticultural Science 126: 205-209.
  • Chagne D, Carlisle CM, Blond C, Volz RK, Whitworth CJ, Oraguzie NC, Crowhurst RN, Allan AC, Espley RV, Hellens RP, Gardiner SE, 2007. Mapping A Candidate Gene (MdMYB10) for Red Flesh and Foliage Colour in Apple. Biomedcentral (BMC) Genomics 8, 212.
  • Cheng FS, Weeden NF, Brown SK, 1996. Identification of Co-Dominant RAPD Markers Tightly Linked to Fruit Skin Colour in Apple. Theoretical and Applied Genetics 93:222-227.
  • Çalışkan M, 2005. Rapd Analizi ile Güllerde (Rosa spp.) Genetik Tanımlama. Ankara Üniversitesi, Fen Bilimleri Enstitüsü, Doktora Tezi, ANKARA.
  • Demirtaş İ, Sarısu HC, Eryılmaz İ, Karamürsel ÖF, Kafkas S, 2009. Kiraz Çeşit ve Tiplerinin Pomolojik, Moleküler ve Genetik Yöntemlerle Karakterizasyonu, TKB Eğirdir Bahçe Kültürleri Araştırma Enstitüsü, Yayın No:31, Eğirdir-ISPARTA.
  • Devran Z, 2003. Moleküler İşaretleyicilerin (Markörlerin) Dayaniklik Islahinda Kullanilmasi. Derim 20:1-6.
  • Dhanapal AP, Martinez-Garcia P, Gradziel T, Crisosto C, 2012. First Genetic Linkage Map of Chilling Injury Susceptibility in Peach (Prunus persica (L.) Batsch) Fruit with SSR and SNP Markers. Journal of Plant Science and Molecular Breeding 1(1), 3.
  • Doğan Y, Kafkas S, Sütyemez M, Akça, Y, Türemiş N, 2014. Assessment and Characterization of Genetic Relationships of Walnut (Juglans regia L.) Genotypes by Three Types of Molecular Markers. Scientia Horticulturae 168, 81-87.
  • Eduardo I, Chietera G, Pirona R, Pacheco I, Troggio M, Banchi E, Bassi D, Rossini L, Vecchietti A, Pozzi C. 2013. Genetic Dissection of Aroma Volatile Compounds From the Essential Oil of Peach Fruit: QTL Analysis and Identification of Candidate Genes Using Dense SNP Maps. Tree Genetics & Genomes 9(1), 189-204.
  • Ercişli S, Ağar G, Yıldırım N, Duralija B, Vokurka A, Karlıdağ H, 2011. Genetic Diversity in Wild Sweet Cherries (Prunus avium) in Turkey Revealed by SSR Markers. Genetics and Molecular Research 10 (2): 1211-1219.
  • Federici CT, Fang DQ, Scora RW, Roose ML, 1998. Phylogenetic Relationships within the Genus Citrus (Rutaceae) and Related Genera as Revealed by RFLP and RAPD Analysis. Theoretical and Applied Genetics 96: 812-822.
  • Garkava‐Gustavsson L, Kolodinska Brantestam A, Sehic J, Nybom H, 2008. Molecular Characterisation of Indigenous Swedish Apple Cultivars Based on SSR and S‐allele Analysis. Hereditas, 145(3), 99-112.
  • Geldermann H, 1975. Investigations on Inheritance of Quantitative Characters in Animals by Gene Markers I. Methods. Theoretical and Applied Genetics 46(7), 319-330.
  • Gökırmak T, Mahlenbacher SA, Bassil NV, 2004. Investigation of Genetic Diversity Among European Hazelnut ( Corylus avellena) Cultivars Using SSR Markers. VI. International Congress on Hazelnut, June14. 2004 Spain.
  • Güneri M, 2005. Hatay’da Yetişen Trabzon Hurmasının (Diospyros Kaki L.) RAPD (Rastgele Çoğaltılmış Polimorfik DNA) Analizi, Ankara Üniversitesi, Fenbilimleri Enstitüsü, Yüksek Lisans Tezi, ANKARA.
  • Gür E, Şeker M, 2012. Beyaz Nektarin Tiplerinin AFLP Moleküler Markör Polimorfizminin Prunus Cinsine Giren Önemli Türlerle Karşılaştırılması. Journal of Agricultural Faculty 26(2), 29-36.
  • Joshi SP, Prabhakar K, Ranjekar PK, Gupta VS, 1999. Molecular Markers in Plant Genome Analysis. Current Science Vol. 77, No:2.
  • Karp A, Edwards KJ, Bruford M, Funk S, Vosman B, Morgante M, Seberg O, Kremer A, Boursot P, Arctander P, Tautz D, Hewıtt GM, 1997. Molecular Technologies for Biodiversity Evaluation: Opportunities and Challenges. Nature Biotechnology. Vol. 15:625-628.
  • Kaymak S, Kaçal E, Öztürk Y, 2013. Screening Breeding Apple Progenies with vf Apple Scab (Venturia inaequalis (cke.) wint.) Disease Resistance Gene Specific Molecular Markers. Integrated Protection of Fruit Crops IOBC-WPRS Bulletin Vol.91, 361-365pp.
  • Kaymak S, Şahin-Çevik M, Çevik B, 2009. Elma Genetik Kaynaklarının Vf Kara Leke (Venturia inaequalis (Cke.) Wint.) Dayanıklılık Genine Spesifik Moleküler Markörlerle Taranması, Türkiye III. Bitki Koruma Kongresi Bildirileri, 15-18 Temmuz 2009, s:230.
  • Kesawat MS, Das BK, 2009. Molecular Markers: It's Application in Crop Improvement. Journal of Crop Science and Biotechnology 12 (4),169 -181.
  • Klagges C, Campoy JA, Quero-García J, Guzman A, Mansur L, Gratacos E, Silva H, Rosyara UR, Iezzoni A, Meisel LA, Dirlewanger E, 2013. Construction and Comparative Analyses of Highly Dense Linkage Maps of Two Sweet Cherry Intra-Specific Progenies of Commercial Cultivars. PloS one 8(1), e54743.
  • Liu W, Liu D, Zhang A, Feng C, Yang J, Yoon J, Li S, 2007. Genetic Diversity and Phylogenetic Relationships Among Plum Germplasm Resources in China Assessed with Inter-Simple Sequence Repeat Markers. Journal of the American Society for Horticultural Science 132(5), 619-628.
  • Martínez-García PJ, Parfitt DE, Ogundiwin EA, Fass J, Chan HM, Ahmad R, Lurie S, Dandekar A, Gradziel TM, Crisosto CH, 2013. High Density SNP Mapping and QTL Analysis for Fruit Quality Characteristics in Peach (Prunus persica L.). Tree Genetics & Genomes, 9(1), 19-36.
  • Melchinger AE, 1990. Use of Molecular Markers in Breeding for Oligogenic Disease Resistance. Plant Breeding 104:1-19.
  • Mullis KB, 1987. Process for Amplifying Nucleic Acid Sequences. U.S. Patent No: 4,683,202.
  • Olmstead JW, Sebolt AM, Cabrera A, Sooriyapathirana SS, Hammar S, Iriarte G, Wang D, Chen CY, Knaap E, Iezzoni AF, 2008. Construction of an Intra-Specific Sweet Cherry (Prunus avium L.) Genetic Linkage Map and Synteny Analysis with the Prunus Reference Map. Tree Genetics & Genomes DOI 10.1007/s11295-008-0161-1.
  • Öz MH, Aygün H, Soydam S, Çukadar K, Bakır M, Yılmaz F, Ünlü HM, Karadoğan B, Vurgun H, Ergül A, 2007. Doğu Anadolu Erik ve Kiraz Gen Kaynaklarının SSR’a Dayalı Moleküler Analizi. V. Bahçe Bitkileri Kongresi, Erzurum.
  • Pinar H., Unlu M, Ercisli S, Uzun A, Bircan M, Yilmaz KU, Agar G, 2013. Determination of Genetic Diversity Among Wild Grown Apricots from Sakit Valley in Turkey Using SRAP Markers. Journal of Applied Botany and Food Quality, 86(1).
  • Rafalski JA, Tingey SV, 1993. Genetic Diagnostics in Plant Breeding, RAPDs, Microsatellites and Machines. TIG, 9(8); 275-280.
  • Ridout CR, Donini P, 1999. Use of AFLP in Cereals Research. Trends in Plant Science. 4:76-79.
  • Roose ML, 1998. Phylogenetic Relationships Within the Genus Citrus (Rutaceae) and Related Genera as Revealed by RFLP and RAPD Analysis. Theoretical and Applied Genetics 96: 812-822.
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There are 58 citations in total.

Details

Primary Language Turkish
Journal Section Makaleler
Authors

Mehmet Aksu

Publication Date January 21, 2015
Published in Issue Year 2015 Volume: 2 Issue: 1

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