Research Article
BibTex RIS Cite
Year 2019, , 252 - 260, 15.12.2019
https://doi.org/10.17557/tjfc.656511

Abstract

References

  • Abo-Elwafa, A., K. Murai and T. Shimada. 1995. Intra-and inter-specific variations in Lens revealed by RAPD markers. Theoretical and Applied Genetics 90: 335-40.
  • Ahamed, K., B. Akhter, M. Islam, M. Humaun and M. Alam. 2014. Morphological characterization and genetic diversity in lentil (Lens culinaris medikus ssp. Culinaris) germplasm. International Journal of Agricultural Research, Innovation and Technology 4: 70-6.
  • Ahmad, M., D. Mcneil, A. Fautrier, K. Armstrong and A. Paterson. 1996. Genetic relationships in Lens species and parentage determination of their interspecific hybrids using RAPD markers. Theoretical and Applied Genetics 92: 1091-8.
  • Alghamdi, S., A. Khan, M. Ammar, E. El-Harty, H. Migdadi, S. El-Khalik, A. Al-Shameri, M. Javed and S. Al-Faifi. 2014. Phenological, nutritional and molecular diversity assessment among 35 introduced lentil (Lens culinaris Medik.) genotypes grown in Saudi Arabia. International Journal of Molecular Sciences 15: 277-95.
  • Ates, D., S. Aldemir, B. Yagmur, A. Kahraman, H. Ozkan, A. Vandenberg and M. B. Tanyolac. 2018a. QTL Mapping of Genome Regions Controlling Manganese Uptake in Lentil Seed. G3: Genes, Genomes, Genetics 8(5):1409-1416.
  • Ates, D., T. K. Asciogul, S. Nemli, S. Erdogmus, D. Esiyok and M. B. Tanyolac. 2018b. Association mapping of days to flowering in common bean (Phaseolus vulgaris L.) revealed by DArT markers. Molecular Breeding 38: 113.
  • Ates, D., T. Sever, S. Aldemir, B. Yagmur, H. Y. Temel, H. B. Kaya, A. Alsaleh, A. Kahraman, H. Ozkan, A. Vandenberg and B. Tanyolac. 2016. Identification QTLs controlling genes for se uptake in lentil seeds. PLoS One 11: e0149210.
  • Babayeva, S., Z. Akparov, M. Abbasov, A. Mammadov, M. Zaifizadeh and K. Street. 2009. Diversity analysis of Central Asia and Caucasian lentil (Lens culinaris Medik.) germplasm using SSR fingerprinting. Genetic Resources and Crop Evolution 56: 293.
  • Basheer-Salimia, R., B. Camilli, S. Scacchi, E. Noli and M. Awad. 2015. Assessment of genetic diversity in lentils (Lens culinaris Medik.) based on SNPs. Genet. Mol. Res 14: 5870-8.
  • Bejiga, G., S. Tsegaye, A. Tullu and W. Erskine. 1996. Quantitative evaluation of Ethiopian landraces of lentil (Lens culinaris). Genet. Resour. Crop Evol 43: 293-301.
  • de la Rosa, L. and N. Jouve. 1992. Genetic variation isozyme genes and proteins in Spanish primitive cultivars and wild subspecies of genus Lens. Euphytica 59: 181-187.
  • Dikshit, H. K., A. Singh, D. Singh, M. S. Aski, P. Prakash, N. Jain, S. Meena, S. Kumar and A. Sarker. 2015. Genetic diversity in Lens species revealed by EST and genomic simple sequence repeat analysis. PLoS One 10: e0138101.
  • Doyle, J. J. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-5.
  • Echeverrigaray, S., A. C. Oliveira, M. T. V. Carvalho and E. Derbyshire. 1998. Evaluation of the relationship between lentil accessions using comparative electrophoresis of seed proteins. J. Genet. Breed 52: 89-94.
  • El-Nahas, A., H. El-Shazly, S. M. Ahmed and A. Omran. 2011. Molecular and biochemical markers in some lentil (Lens culinaris Medik.) genotypes. Annals of Agricultural Sciences 56: 105-12.
  • Erskine, W., Y. Adham and L. Holly. 1989. Geographic distribution of variation in quantitative traits in a world lentil collection. Euphytica 43: 97-103.
  • Erskine, W. and M. Choudhary. 1986. Variation between and within lentil landraces from Yemen Arab Republic. Euphytica 35: 695-700.
  • Erskine, W. and F. Muehlbauer. 1991. Allozyme and morphological variability, outcrossing rate and core collection formation in lentil germplasm. Theoretical and Applied Genetics 83: 119-25.
  • Ferguson, M. E., L. D. Robertson, B. V. Ford-Lloyd, H. J. Newbury and N. Maxted. 1998. Contrasting genetic variation amongst lentil landraces from different geographical origins. Euphytica 102: 265-73.
  • Fikiru, E., K. Tesfaye and E. Bekele. 2007. Genetic diversity and population structure of Ethiopian lentil (Lens culinaris Medikus) landraces as revealed by ISSR marker. African Journal of Biotechnology 6.
  • Ford, R., E. Pang and P. Taylor. 1997. Diversity analysis and species identification in Lens using PCR generated markers. Euphytica 96: 247-55.
  • Havey, M. and F. Muehlbauer. 1989. Variability for restriction fragment lengths and phylogenies in lentil. Theoretical and Applied Genetics 77: 839-43.
  • Huson, D. H. and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-67.
  • Huttner, E., P. Wenzl, M. Akbari, V. Caig, J. Carling, C. Cayla, M. Evers, D. Jaccoud, K. Peng and S. Patarapuwadol. Diversity arrays technology: a novel tool for harnessing the genetic potential of orphan crops. Proceedings of the Discovery to Delivery: BioVision Alexandria 2004, Proceedings of the 2004 Conference of The World Biological Forum. CABI Publishing: UK, 2005, 145-55.
  • Idrissi, O., A. R. Piergiovanni, F. Toklu, C. Houasli, S. M. Udupa, E. De Keyser, P. Van Damme and J. De Riek. 2018. Molecular variance and population structure of lentil (Lens culinaris Medik.) landraces from Mediterranean countries as revealed by simple sequence repeat DNA markers: implications for conservation and use. Plant Genetic Resources 16: 249-59.
  • Idrissi, O., M. S. Udupa, E. De Keyser, P. Van Damme and J. De Riek. 2016. Functional genetic diversity analysis and identification of associated simple sequence repeats and amplified fragment length polymorphism markers to drought tolerance in lentil (Lens culinaris ssp. culinaris Medicus) Landraces. Plant Molecular Biology Reporter 34: 659-80.
  • Idrissi, O., S. M. Udupa, C. Houasli, E. De Keyser, P. Van Damme and J. De Riek. 2015. Genetic diversity analysis of Moroccan lentil (Lens culinaris Medik.) landraces using Simple Sequence Repeat and Amplified Fragment Length Polymorphisms reveals functional adaptation towards agro‐environmental origins. Plant Breeding 134: 322-32.
  • Jin, L., G. Jian-Ping, X. Dong-Xu, X.-Y. Zhang, G. Jing and Z. Xu-Xiao. 2008. Genetic diversity and population structure in lentil (Lens culinaris Medik.) germplasm detected by SSR markers. Acta Agronomica Sinica 34: 1901-9.
  • Kaur, S., N. O. Cogan, L. W. Pembleton, M. Shinozuka, K. W. Savin, M. Materne and J. W. Forster. 2011. Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery. BMC Genomics 12: 265.
  • Khazaei, H., C. T. Caron, M. Fedoruk, M. Diapari, A. Vandenberg, C. J. Coyne, R. Mcgee and K. E. Bett. 2016a. Genetic diversity of cultivated lentil (Lens culinaris Medik.) and its relation to the world's agro-ecological zones. Frontiers in Plant Science 7:1093.
  • Kushwaha, U., S. Ghimire, N. Yadav and B. Ojha. 2013. Genetic relatedness of lentil (Lens culinaris L.) germplasm by using SSR markers. International Journal of Applied Sciences and Biotechnology 1: 132-6.
  • Lazaro, A., M. Ruiz, L. de la Rosa and I. Martin. 2001. Relationship between agro/morphological characters and climatic parameters in Spanish landraces of lentil (Lens culinaris Medik.). Genet. Resour. Crop Evol 48: 239-249.
  • Lombardi, M., M. Materne, N. O. Cogan, M. Rodda, H. D. Daetwyler, A. T. Slater, J. W. Forster and S. Kaur. 2014. Assessment of genetic variation within a global collection of lentil (Lens culinaris Medik.) cultivars and landraces using SNP markers. BMC Genetics 15: 150.
  • Maxted, N. and S. J. Bennett, 2001. Legume diversity in the Mediterranean region. In. Plant genetic resources of legumes in the Mediterranean. Springer 51-75.
  • Nei, M., 1987. Molecular evolutionary genetics. Columbia University press, New York. 1987. 512 pp. Am. J. Phys. Anthropol 75(1988): 428-429.
  • Nei, M. and W.-H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences 76: 5269-73.
  • Nemli, S., T. Kianoosh and M. B. Tanyolac. 2015. Genetic diversity and population structure of common bean (Phaseolus vulgaris L.) accessions through retrotransposon-based interprimer binding sites (iPBSs) markers. Turkish Journal of Agriculture and Forestry 39: 940-8.
  • Ozkuru, E., D. Ates, S. Nemli, S. Erdogmus, N. Karaca, H. Yilmaz, B. Yagmur, C. Kartal, M. Tosun and O. O. Ocak. 2019. Genome-wide association studies of molybdenum and selenium concentrations in C. arietinum and C. reticulatum seeds. Molecular Breeding 39: 46.
  • Ozkuru, E., D. Ates, S. Nemli, S. Erdogmus, N. Karaca, H. Yilmaz, B. Yagmur, C. Kartal, M. Tosun and O. Ozdestan. 2018. Association mapping of loci linked to copper, phosphorus, and potassium concentrations in the seeds of C. arietinum and C. reticulatum. Genomics. https://doi.org/10.1016/j.ygeno.2018.12.010.
  • Piergiovanni, A. R and G. Taranto. 2003. Geographic distribution of genetic variation in lentil collection as revealed by SDS-PAGE fractionation of seed storage proteins. J. Genet. Breed 57: 39-46.
  • Raj, A., M. Stephens and J.K. Pritchard. 2014. FastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets. Genetics 197: 573-589.
  • Sansaloni, C. P., C. D. Petroli, J. Carling, C. J. Hudson, D. A. Steane, A. A. Myburg, D. Grattapaglia, R. E. Vaillancourt and A. Kilian. 2010. A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus. Plant Methods 6: 16.
  • Scippa, G., D. Trupiano, M. Rocco, V. Viscosi, M. Di Michele, A. D'andrea and D. Chiatante. 2008. An integrated approach to the characterization of two autochthonous lentil (Lens culinaris) landraces of Molise (south-central Italy). Heredity 101: 136.
  • Seyedimoradi, H. and R. Talebi. 2014. Detecting DNA polymorphism and genetic diversity in Lentil (Lens culinaris Medik.) germplasm: comparison of ISSR and DAMD marker. Physiology and Molecular Biology of Plants 20: 495-500.
  • Sharma, S., M. Knox and T. N. Ellis. 1996. AFLP analysis of the diversity and phylogeny of Lens and its comparison with RAPD analysis. Theoretical and Applied Genetics 93: 751-8.
  • Sharpe, A., L. Ramsay, L.A. Sanderson, M. Fedoruk, W. Clarke, R. Li, S. Kagale, P. Vijayan, A. Vandenberg and K. Bett. 2013. Ancient crop joins modern era: gene-based SNP discovery and mapping in lentil. BMC Genomics 14: 192.
  • Sonnante, G. and D. Pignone. 2001. Assessment of genetic variation in a collection of lentil using molecular tools. Euphytica 120: 301-7.
  • Sonnante, G. and D. Pignone. 2007. The major Italian landraces of lentil (Lens culinaris Medik.): their molecular diversity and possible origin. Genetic Resources and Crop Evolution 54: 1023-31.
  • Sultana, T., A. Ghafoor and M. Ashraf. 2006. Geographic patterns of diversity of cultivated lentil germplasm collected from Pakistan, as assessed by seed protein assays. Acta Biologica Cracoviensia, Series Botanica, Poland 48: 77-84.
  • Toklu, F., T. Karakoy, E. Haklı, T. Bicer, A. Brandolini, B. Kilian and H. Ozkan. 2009. Genetic variation among lentil (Lens culinaris Medik) landraces from Southeast Turkey. Plant Breeding 128: 178-86.
  • Tommasini, L., T. Schnurbusch, D. Fossati, F. Mascher and B. Keller. 2007. Association mapping of Stagonospora nodorum blotch resistance in modern European winter wheat varieties. Theoretical and Applied Genetics 115:697-708.
  • Tsanakas, G. F., P. V. Mylona, K. Koura, A. Gleridou and A. N. Polidoros. 2018. Genetic diversity analysis of the Greek lentil (Lens culinaris) landrace ‘Eglouvis’ using morphological and molecular markers. Plant Genetic Resources 16: 469-77.
  • Varshney, R.K., A. Graner and M.E. Sorrells. 2005. Genomics-assisted breeding for crop improvement. Trends in Plant Science 10:621-630.
  • Villa, T. C. C., N. Maxted, M. Scholten and B. Ford-Lloyd. 2005. Defining and identifying crop landraces. Plant Genetic Resources 3: 373-84.
  • Wong, M. M., N. Gujaria-Verma, L. Ramsay, H. Y. Yuan, C. Caron, M. Diapari, A. Vandenberg and K. E. Bett. 2015. Classification and characterization of species within the genus Lens using genotyping-by-sequencing (GBS). PLoS One 10: e0122025.
  • Yuzbasioglu, E., S. Ozcan and L. Acık. 2006. Analysis of genetic relationships among Turkish cultivars and breeding lines of Lens culinatis Mestile using RAPD markers. Genetic Resources and Crop Evolution 53: 507-14.
  • Zaccardelli, M., F. Lupo, A. R. Piergiovanni, G. Laghetti, G. Sonnante, M. G. Daminati, F. Sparvoli and L. Lioi. 2012. Characterization of Italian lentil (Lens culinaris Medik.) germplasm by agronomic traits, biochemical and molecular markers. Genetic Resources and Crop Evolution 59: 727-38.

GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT)

Year 2019, , 252 - 260, 15.12.2019
https://doi.org/10.17557/tjfc.656511

Abstract

Lentil is annual, autogamous and diploid (2n = 2x= 14) food legume with ~4 Gbp genome in size. Turkey is well known for its species richness with “diversity hot spots” for different legumes including lentil. In previous studies, various DNA markers were utilized but genetic diversity of lentil landraces have not yet been clarified. For this reason, present study aimed to identify genetic diversity of 94 Turkish lentil landraces utilizing 16,383 SNPs based on DArT technology. Results from “fastSTRUCTURE” analysis indicated that the unweighted pair group analysis with the arithmetic mean (UPGMA) dendrogram including a heat map and also principal component analysis (PCoA) showed that Turkish lentil landraces were classified into five main groups in current study, indicating the existence of a large genetic variation among landraces. Highest genetic variation was between geno34 and geno76 (0.9126) while the lowest genetic variation was between geno7 and geno1 (0.0104) and the average genetic variation among 94 lentil landraces was 0.63. The data obtained from current study can be utilized to increase genetic diversity of cultivated species and establish suitable conservation and breeding strategies of lentil.

References

  • Abo-Elwafa, A., K. Murai and T. Shimada. 1995. Intra-and inter-specific variations in Lens revealed by RAPD markers. Theoretical and Applied Genetics 90: 335-40.
  • Ahamed, K., B. Akhter, M. Islam, M. Humaun and M. Alam. 2014. Morphological characterization and genetic diversity in lentil (Lens culinaris medikus ssp. Culinaris) germplasm. International Journal of Agricultural Research, Innovation and Technology 4: 70-6.
  • Ahmad, M., D. Mcneil, A. Fautrier, K. Armstrong and A. Paterson. 1996. Genetic relationships in Lens species and parentage determination of their interspecific hybrids using RAPD markers. Theoretical and Applied Genetics 92: 1091-8.
  • Alghamdi, S., A. Khan, M. Ammar, E. El-Harty, H. Migdadi, S. El-Khalik, A. Al-Shameri, M. Javed and S. Al-Faifi. 2014. Phenological, nutritional and molecular diversity assessment among 35 introduced lentil (Lens culinaris Medik.) genotypes grown in Saudi Arabia. International Journal of Molecular Sciences 15: 277-95.
  • Ates, D., S. Aldemir, B. Yagmur, A. Kahraman, H. Ozkan, A. Vandenberg and M. B. Tanyolac. 2018a. QTL Mapping of Genome Regions Controlling Manganese Uptake in Lentil Seed. G3: Genes, Genomes, Genetics 8(5):1409-1416.
  • Ates, D., T. K. Asciogul, S. Nemli, S. Erdogmus, D. Esiyok and M. B. Tanyolac. 2018b. Association mapping of days to flowering in common bean (Phaseolus vulgaris L.) revealed by DArT markers. Molecular Breeding 38: 113.
  • Ates, D., T. Sever, S. Aldemir, B. Yagmur, H. Y. Temel, H. B. Kaya, A. Alsaleh, A. Kahraman, H. Ozkan, A. Vandenberg and B. Tanyolac. 2016. Identification QTLs controlling genes for se uptake in lentil seeds. PLoS One 11: e0149210.
  • Babayeva, S., Z. Akparov, M. Abbasov, A. Mammadov, M. Zaifizadeh and K. Street. 2009. Diversity analysis of Central Asia and Caucasian lentil (Lens culinaris Medik.) germplasm using SSR fingerprinting. Genetic Resources and Crop Evolution 56: 293.
  • Basheer-Salimia, R., B. Camilli, S. Scacchi, E. Noli and M. Awad. 2015. Assessment of genetic diversity in lentils (Lens culinaris Medik.) based on SNPs. Genet. Mol. Res 14: 5870-8.
  • Bejiga, G., S. Tsegaye, A. Tullu and W. Erskine. 1996. Quantitative evaluation of Ethiopian landraces of lentil (Lens culinaris). Genet. Resour. Crop Evol 43: 293-301.
  • de la Rosa, L. and N. Jouve. 1992. Genetic variation isozyme genes and proteins in Spanish primitive cultivars and wild subspecies of genus Lens. Euphytica 59: 181-187.
  • Dikshit, H. K., A. Singh, D. Singh, M. S. Aski, P. Prakash, N. Jain, S. Meena, S. Kumar and A. Sarker. 2015. Genetic diversity in Lens species revealed by EST and genomic simple sequence repeat analysis. PLoS One 10: e0138101.
  • Doyle, J. J. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-5.
  • Echeverrigaray, S., A. C. Oliveira, M. T. V. Carvalho and E. Derbyshire. 1998. Evaluation of the relationship between lentil accessions using comparative electrophoresis of seed proteins. J. Genet. Breed 52: 89-94.
  • El-Nahas, A., H. El-Shazly, S. M. Ahmed and A. Omran. 2011. Molecular and biochemical markers in some lentil (Lens culinaris Medik.) genotypes. Annals of Agricultural Sciences 56: 105-12.
  • Erskine, W., Y. Adham and L. Holly. 1989. Geographic distribution of variation in quantitative traits in a world lentil collection. Euphytica 43: 97-103.
  • Erskine, W. and M. Choudhary. 1986. Variation between and within lentil landraces from Yemen Arab Republic. Euphytica 35: 695-700.
  • Erskine, W. and F. Muehlbauer. 1991. Allozyme and morphological variability, outcrossing rate and core collection formation in lentil germplasm. Theoretical and Applied Genetics 83: 119-25.
  • Ferguson, M. E., L. D. Robertson, B. V. Ford-Lloyd, H. J. Newbury and N. Maxted. 1998. Contrasting genetic variation amongst lentil landraces from different geographical origins. Euphytica 102: 265-73.
  • Fikiru, E., K. Tesfaye and E. Bekele. 2007. Genetic diversity and population structure of Ethiopian lentil (Lens culinaris Medikus) landraces as revealed by ISSR marker. African Journal of Biotechnology 6.
  • Ford, R., E. Pang and P. Taylor. 1997. Diversity analysis and species identification in Lens using PCR generated markers. Euphytica 96: 247-55.
  • Havey, M. and F. Muehlbauer. 1989. Variability for restriction fragment lengths and phylogenies in lentil. Theoretical and Applied Genetics 77: 839-43.
  • Huson, D. H. and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-67.
  • Huttner, E., P. Wenzl, M. Akbari, V. Caig, J. Carling, C. Cayla, M. Evers, D. Jaccoud, K. Peng and S. Patarapuwadol. Diversity arrays technology: a novel tool for harnessing the genetic potential of orphan crops. Proceedings of the Discovery to Delivery: BioVision Alexandria 2004, Proceedings of the 2004 Conference of The World Biological Forum. CABI Publishing: UK, 2005, 145-55.
  • Idrissi, O., A. R. Piergiovanni, F. Toklu, C. Houasli, S. M. Udupa, E. De Keyser, P. Van Damme and J. De Riek. 2018. Molecular variance and population structure of lentil (Lens culinaris Medik.) landraces from Mediterranean countries as revealed by simple sequence repeat DNA markers: implications for conservation and use. Plant Genetic Resources 16: 249-59.
  • Idrissi, O., M. S. Udupa, E. De Keyser, P. Van Damme and J. De Riek. 2016. Functional genetic diversity analysis and identification of associated simple sequence repeats and amplified fragment length polymorphism markers to drought tolerance in lentil (Lens culinaris ssp. culinaris Medicus) Landraces. Plant Molecular Biology Reporter 34: 659-80.
  • Idrissi, O., S. M. Udupa, C. Houasli, E. De Keyser, P. Van Damme and J. De Riek. 2015. Genetic diversity analysis of Moroccan lentil (Lens culinaris Medik.) landraces using Simple Sequence Repeat and Amplified Fragment Length Polymorphisms reveals functional adaptation towards agro‐environmental origins. Plant Breeding 134: 322-32.
  • Jin, L., G. Jian-Ping, X. Dong-Xu, X.-Y. Zhang, G. Jing and Z. Xu-Xiao. 2008. Genetic diversity and population structure in lentil (Lens culinaris Medik.) germplasm detected by SSR markers. Acta Agronomica Sinica 34: 1901-9.
  • Kaur, S., N. O. Cogan, L. W. Pembleton, M. Shinozuka, K. W. Savin, M. Materne and J. W. Forster. 2011. Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery. BMC Genomics 12: 265.
  • Khazaei, H., C. T. Caron, M. Fedoruk, M. Diapari, A. Vandenberg, C. J. Coyne, R. Mcgee and K. E. Bett. 2016a. Genetic diversity of cultivated lentil (Lens culinaris Medik.) and its relation to the world's agro-ecological zones. Frontiers in Plant Science 7:1093.
  • Kushwaha, U., S. Ghimire, N. Yadav and B. Ojha. 2013. Genetic relatedness of lentil (Lens culinaris L.) germplasm by using SSR markers. International Journal of Applied Sciences and Biotechnology 1: 132-6.
  • Lazaro, A., M. Ruiz, L. de la Rosa and I. Martin. 2001. Relationship between agro/morphological characters and climatic parameters in Spanish landraces of lentil (Lens culinaris Medik.). Genet. Resour. Crop Evol 48: 239-249.
  • Lombardi, M., M. Materne, N. O. Cogan, M. Rodda, H. D. Daetwyler, A. T. Slater, J. W. Forster and S. Kaur. 2014. Assessment of genetic variation within a global collection of lentil (Lens culinaris Medik.) cultivars and landraces using SNP markers. BMC Genetics 15: 150.
  • Maxted, N. and S. J. Bennett, 2001. Legume diversity in the Mediterranean region. In. Plant genetic resources of legumes in the Mediterranean. Springer 51-75.
  • Nei, M., 1987. Molecular evolutionary genetics. Columbia University press, New York. 1987. 512 pp. Am. J. Phys. Anthropol 75(1988): 428-429.
  • Nei, M. and W.-H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences 76: 5269-73.
  • Nemli, S., T. Kianoosh and M. B. Tanyolac. 2015. Genetic diversity and population structure of common bean (Phaseolus vulgaris L.) accessions through retrotransposon-based interprimer binding sites (iPBSs) markers. Turkish Journal of Agriculture and Forestry 39: 940-8.
  • Ozkuru, E., D. Ates, S. Nemli, S. Erdogmus, N. Karaca, H. Yilmaz, B. Yagmur, C. Kartal, M. Tosun and O. O. Ocak. 2019. Genome-wide association studies of molybdenum and selenium concentrations in C. arietinum and C. reticulatum seeds. Molecular Breeding 39: 46.
  • Ozkuru, E., D. Ates, S. Nemli, S. Erdogmus, N. Karaca, H. Yilmaz, B. Yagmur, C. Kartal, M. Tosun and O. Ozdestan. 2018. Association mapping of loci linked to copper, phosphorus, and potassium concentrations in the seeds of C. arietinum and C. reticulatum. Genomics. https://doi.org/10.1016/j.ygeno.2018.12.010.
  • Piergiovanni, A. R and G. Taranto. 2003. Geographic distribution of genetic variation in lentil collection as revealed by SDS-PAGE fractionation of seed storage proteins. J. Genet. Breed 57: 39-46.
  • Raj, A., M. Stephens and J.K. Pritchard. 2014. FastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets. Genetics 197: 573-589.
  • Sansaloni, C. P., C. D. Petroli, J. Carling, C. J. Hudson, D. A. Steane, A. A. Myburg, D. Grattapaglia, R. E. Vaillancourt and A. Kilian. 2010. A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus. Plant Methods 6: 16.
  • Scippa, G., D. Trupiano, M. Rocco, V. Viscosi, M. Di Michele, A. D'andrea and D. Chiatante. 2008. An integrated approach to the characterization of two autochthonous lentil (Lens culinaris) landraces of Molise (south-central Italy). Heredity 101: 136.
  • Seyedimoradi, H. and R. Talebi. 2014. Detecting DNA polymorphism and genetic diversity in Lentil (Lens culinaris Medik.) germplasm: comparison of ISSR and DAMD marker. Physiology and Molecular Biology of Plants 20: 495-500.
  • Sharma, S., M. Knox and T. N. Ellis. 1996. AFLP analysis of the diversity and phylogeny of Lens and its comparison with RAPD analysis. Theoretical and Applied Genetics 93: 751-8.
  • Sharpe, A., L. Ramsay, L.A. Sanderson, M. Fedoruk, W. Clarke, R. Li, S. Kagale, P. Vijayan, A. Vandenberg and K. Bett. 2013. Ancient crop joins modern era: gene-based SNP discovery and mapping in lentil. BMC Genomics 14: 192.
  • Sonnante, G. and D. Pignone. 2001. Assessment of genetic variation in a collection of lentil using molecular tools. Euphytica 120: 301-7.
  • Sonnante, G. and D. Pignone. 2007. The major Italian landraces of lentil (Lens culinaris Medik.): their molecular diversity and possible origin. Genetic Resources and Crop Evolution 54: 1023-31.
  • Sultana, T., A. Ghafoor and M. Ashraf. 2006. Geographic patterns of diversity of cultivated lentil germplasm collected from Pakistan, as assessed by seed protein assays. Acta Biologica Cracoviensia, Series Botanica, Poland 48: 77-84.
  • Toklu, F., T. Karakoy, E. Haklı, T. Bicer, A. Brandolini, B. Kilian and H. Ozkan. 2009. Genetic variation among lentil (Lens culinaris Medik) landraces from Southeast Turkey. Plant Breeding 128: 178-86.
  • Tommasini, L., T. Schnurbusch, D. Fossati, F. Mascher and B. Keller. 2007. Association mapping of Stagonospora nodorum blotch resistance in modern European winter wheat varieties. Theoretical and Applied Genetics 115:697-708.
  • Tsanakas, G. F., P. V. Mylona, K. Koura, A. Gleridou and A. N. Polidoros. 2018. Genetic diversity analysis of the Greek lentil (Lens culinaris) landrace ‘Eglouvis’ using morphological and molecular markers. Plant Genetic Resources 16: 469-77.
  • Varshney, R.K., A. Graner and M.E. Sorrells. 2005. Genomics-assisted breeding for crop improvement. Trends in Plant Science 10:621-630.
  • Villa, T. C. C., N. Maxted, M. Scholten and B. Ford-Lloyd. 2005. Defining and identifying crop landraces. Plant Genetic Resources 3: 373-84.
  • Wong, M. M., N. Gujaria-Verma, L. Ramsay, H. Y. Yuan, C. Caron, M. Diapari, A. Vandenberg and K. E. Bett. 2015. Classification and characterization of species within the genus Lens using genotyping-by-sequencing (GBS). PLoS One 10: e0122025.
  • Yuzbasioglu, E., S. Ozcan and L. Acık. 2006. Analysis of genetic relationships among Turkish cultivars and breeding lines of Lens culinatis Mestile using RAPD markers. Genetic Resources and Crop Evolution 53: 507-14.
  • Zaccardelli, M., F. Lupo, A. R. Piergiovanni, G. Laghetti, G. Sonnante, M. G. Daminati, F. Sparvoli and L. Lioi. 2012. Characterization of Italian lentil (Lens culinaris Medik.) germplasm by agronomic traits, biochemical and molecular markers. Genetic Resources and Crop Evolution 59: 727-38.
There are 57 citations in total.

Details

Primary Language English
Journal Section Articles
Authors

Duygu Ates This is me

Publication Date December 15, 2019
Published in Issue Year 2019

Cite

APA Ates, D. (2019). GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT). Turkish Journal Of Field Crops, 24(2), 252-260. https://doi.org/10.17557/tjfc.656511
AMA Ates D. GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT). TJFC. December 2019;24(2):252-260. doi:10.17557/tjfc.656511
Chicago Ates, Duygu. “GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT)”. Turkish Journal Of Field Crops 24, no. 2 (December 2019): 252-60. https://doi.org/10.17557/tjfc.656511.
EndNote Ates D (December 1, 2019) GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT). Turkish Journal Of Field Crops 24 2 252–260.
IEEE D. Ates, “GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT)”, TJFC, vol. 24, no. 2, pp. 252–260, 2019, doi: 10.17557/tjfc.656511.
ISNAD Ates, Duygu. “GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT)”. Turkish Journal Of Field Crops 24/2 (December 2019), 252-260. https://doi.org/10.17557/tjfc.656511.
JAMA Ates D. GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT). TJFC. 2019;24:252–260.
MLA Ates, Duygu. “GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT)”. Turkish Journal Of Field Crops, vol. 24, no. 2, 2019, pp. 252-60, doi:10.17557/tjfc.656511.
Vancouver Ates D. GENETIC DIVERSITY IN LENTIL LANDRACES REVEALED BY DIVERSITY ARRAY TECHNOLOGY (DArT). TJFC. 2019;24(2):252-60.

Turkish Journal of Field Crops is published by the Society of Field Crops Science and issued twice a year.
Owner : Prof. Dr. Behçet KIR
Ege University, Faculty of Agriculture,Department of Field Crops
Editor in Chief : Prof. Dr. Emre ILKER
Address : 848 sok. 2. Beyler İşhanı No:72, Kat:3 D.313 35000 Konak-Izmir, TURKEY
Email :  turkishjournaloffieldcrops@gmail.com contact@field-crops.org
Tel : +90 232 3112679
Tel/Fax : : +90 232 3432474