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Identification of some lichenized fungi species of Erciyes Mountain Kayseri/Turkey by using ITS rDNA marker

Year 2016, Volume: 9 Issue: 2, 84 - 95, 15.08.2016

Mehmet Ünsal Barak Mehmet Gökhan Halıcı Mithat Güllü

Abstract

In this study; we analysed the ITS sequences of 9 lichenized fungi species Aspicilia cinerea, Circinaria contorta, Lecidea atrobrunnea, Lecanora rupicola, Physcia dubia, Rhizoplaca peltata, Rhizocarpon geographicum, Tephromela atra and Xanthoparmelia pulla which have a wide distribution in the alpine zone of Erciyes Volcanic Mountain in Central Anatolia. ITS sequence data obtained from those 9 species are deposited by us in GenBank for further molecular studies and Neighbor-joining dendrograms with related species obtained from GenBank are also presented here along with the macroscopic photographs of the specimens studied. Besides, morphological and ecological differences between the related species are discussed

Keywords

Lichens biodiversity systematics taxonomy

References

  • Armstrong, R. A. 2002. The effect of rock surface aspect on growth, size structure and competition in the lichen Rhizocarpon geographicum. Environmental and Experimental Botany. 48/2. 187-194.
  • Arup, U., Grube, M. 2000. Is Rhizoplaca (Lecanorales, lichenized Ascomycota) a monophyletic genus. Canadian Journal of Botany. 78/3. 318-327.
  • Arup, U., Sİchting, U., Frödén, P. 2013. A new taxonomy of the family Teloschistaceae. Nordic Journal of Botany. 31/1. 16-83.
  • Aslan, A. 2000. Lichens from the regions of Artvin, Erzurum, and Kars (Turkey). Israel Journal of Plant Sciences. 48/2. 143-155.
  • Brodo, I. M., Sharnoff, S. D., Sharnoff, S. 2001. Lichens of North America. Yale University Press. New Haven. USA.
  • Brodo, I. M., Craig, B. 2003. Identifying Mixed Hardwood Forest Lichens, A Reference Notebook. Environment Canada, Canada Centre for Inland Waters, Burlington, Ontario, Canada.
  • Candan, M., Özdemir Türk, A. 2008. Lichens of Malatya, Elazığ and Adıyaman provinces (Turkey). Mycotaxon. 105. 19-22.
  • Çobanoğlu, G., Açıkgöz, B., Baloniu, L. 2013. Contributions to lichen diversity of Turkey from the Sarısu area (Kocaeli). Turkish Journal of Botany. 37. 964-969.
  • De Paz, G. A., Cubas, P., Crespo, A., Elix, J. A., Lumbsch, H. T. 2012. Transoceanic dispersal and subsequent diversification on separate continents shaped diversity of the Xanthoparmelia pulla group (Ascomycota). PloS one, 7/6. e39683.
  • Fryday, A., Coppins, B. 1997. Keys to sterile, crustose saxicolous and terricolous lichens occurring in the British Isles. The Lichenologist. 29/4. 301-332.
  • Galloway, D. J., Moberg, R. 2005. The lichen genus Physcia (Schreb.) Michx.(Physciaceae: Ascomycota) in New Zealand. Tuhinga. 16. 59-91.
  • Giordani, P., Nicora, P., Rellini, I., Brunialti, G., Elix, J. A. 2002. The lichen genus Xanthoparmelia (Ascomycotina, Parmeliaceae) in Italy. The Lichenologist. 34/3. 189-198.
  • Guzow, B., Gamiak, MK., Wegrzyn, G. 2001. Moleculer determination keys: construction of keys for species identification based on restriction fragment length polymorphism. International Archives of Bioscience. 1. 1057-1067.
  • Güvenç, S. 2001. Some lichen records from Kayseri province. Ot Sistematik Botanik Dergisi 8/2. 143–150.
  • Güvenç, Ş., Öztürk, Ş., Aydın, S. 2006. Contributions to the lichen flora of Kastamonu and Sinop Provinces in Turkey. Nova Hedwigia. 83/1-2. 67-98.
  • Halıcı, M. G., John, V. Aksoy, A. 2005. Lichens of Erciyes Mountain (Kayseri, Turkey). Flora Mediterranea. 15. 567-580.
  • Halıcı, M. G., Kocakaya, M., Aksoy, A. 2006. Additional and Interesting Lichenized and Lichenicolous Fungi From Turkey. Mycotaxon, 96. 13-19.
  • Halıcı, M. G., Hawksworth, D.L., Aksoy, A. 2007. New and interesting lichenicolous fungi records from Turkey. Nova Hedwigia. 85. 393-401.
  • Halıcı, M. G., Cansaran Duman, D. 2007. Lichenized and lichenicolous fungi of Yaylacık (Bolu) and Yenice (Karabük) research forests in Turkey. Mycologica Balcanica. 4. 97-103.
  • Halıcı, M. G., Güvenç, Ş. 2008. Lichens from Mediterranean Region of Turkey. Cryptogamiae Mycol. 29. 95–106.
  • Halıcı, M. G., Aksoy, A. 2009. Lichenised and Lichenicolous Fungi of Aladağlar National Park (Niğde, Kayseri and Adana Provinces) in Turkey. Turkish Journal of Botany. 33/3. 169-189.
  • Halıcı, M. G., Candan, M., Güllü, M. 2014. Phoma recepii sp. nov. from the Caloplaca cerina group in Turkey. Mycotaxon, 129/1. 163-168.
  • Hesbacher, S., Fröberg, L., Baur, A., Baur, B., Proksch, P. 1996. Chemical variation within and between individuals of the lichenized ascomycete Tephromela atra. Biochemical systematics and ecology. 24/7. 603-609.
  • John, V. 2002. Lichenes Anatolici Exsiccati. Fasc. 6-7. Arnoldia. 21. 1-28.
  • John, V., Breuss, O. 2004. Flechten der östlichen Schwarzmeer-Region in der Türkei (BLAM-Exkursion 1997). Herzogia. 17. 137- 156.
  • Joshi, Y., Koh, Y. J., Hur, J. S. 2010. Three new records of lichen genus Rhizocarpon from South Korea. Mycobiology. 38/3. 219- 221.
  • Kınalıoğlu, K., Aptroot, A. 2012. Some Lichens From Afyonkarahisar and Kırıkkale Provinces. Gazi University Journal of Science. 25/2. 301-306.
  • Kocakaya, M., Halıcı, M. G., Aksoy, A. 2009. Lichens and lichenicolous fungi of Kızıldağ (Derebucak, Konya). Turkish Journal of Botany. 33/2. 105-112.
  • Lumbsch, H. T., Elix, J. A. 2004. Lecanora. In Flora of Australia. Volume 56A, Lichens. 4. 12–62.
  • Matwiejuk, A. 2012. Rhizocarpon lavatum and R. reductum (Rhizocarpaceae, Ascomycota), two misunderstood taxa found in the Gorce Mts (Polish Carpathians). Acta Mycologica. 47/1. 121-126.
  • Millot, M., Tomasi, S., Sinbandhit, S., Boustie, J. 2008. Phytochemical investigation of Tephromela atra: NMR studies of collatolic acid derivatives. Phytochemistry Letters. 1/3. 139-143.
  • Moberg, R., Hansen, E. S. 1986. The lichen genus Physcia and allied genera in Greenland. Bioscience. 22. 3-11.
  • Moniri, M. H., Kamyabi, S., Clayden, S. R. 2010. A preliminary study of Rhizocarpon macrosporum in Razavi Khorasan Province (NE Iran). The Iranian Journal of Botany. 16/1. 185-189.
  • Muggia, L., Grube, M., Tretiach, M. 2008. Genetic diversity and photobiont associations in selected taxa of the Tephromela atra group (Lecanorales, lichenised Ascomycota). Mycological Progress 7/3. 147-160.
  • Nash, T. H. 2002. Lichen flora of the greater Sonoran desert region. Lichens Unlimited. Arizona State University. Arizona. USA.
  • Nimis, P. L., John, V. 1998. A contribution to the lichen flora of Mediterranean Turkey. Cryptogamie. Bryologie, lichénologie. 19/1. 35-58.
  • Nordin, A., Tibell, L. Owe-Larsson, B. 2007. A preliminary phylogeny of Aspicilia in relation to morphological and secondary product variation. In: Lichenologische Nebenstunden: Contributions to lichen taxonomy and ecology in honour of Klaus Kalb. 247-266.
  • Oran, S., Uğur, A., Öztürk, Ş. 2007. Some Lichen Records From Quercus vulcanica Forests Around Yukarı Gökdere (Isparta, Turkey). J. Biol. Environ. Sci. 1/3. 121-126.
  • Pérez-Vargas, I., Padrón, C. H., de Paz, P., Pedro, L., Elix, J. A. 2010. Tephromela follmannii (lichenized Ascomycota), a new species from the Canary Islands. Mycotaxon. 112/1. 9-14.
  • Pisut, I., 1970. Interessante flechtenfunde aus der Türkei. Preslia (Praha). 42. 379-383.
  • Purvis, O. W. 1992. Lichen Flora of Great Britain and Ireland. Natural History Museum Publications in association with the British Lichen Society.
  • Rigler, L. 1852. Die Türkei und deren Bewohner, in ihren naturhistorischen, physiologischen und pathologischen Verthältnissen vom Standpunkte Constantinopel’s. Wien 1: 110.
  • Roux, C. 2012. Liste des lichens et champignons lichénicoles de France. Bull. Soc. Linn. Provence. 16/3. 3-220.
  • Ruprecht, U., Lumbsch, H. T., Brunauer, G., Green, T. G., Türk, R. 2010. Diversity of Lecidea (Lecideaceae, Ascomycota) species revealed by molecular data and morphological characters. Antarctic Science. 22/06. 727-741.
  • Seppelt, R. D., Green, T. G. A., Schroeter, B. 1996. Additions and corrections to the lichen flora of the Kar Plateau, Southern Victoria Land, Antarctica. New Zealand Journal of Botany. 34/3. 329-331.
  • Steiner, J. 1905. Lichenes. In: Ergebnisse einer naturwissensch. Reise zum Erschias-Dagh (Kleinasien) von Dr. Arnold Penter und dr. Emerich Zederbauer im Jahre 1902. Ann. Naturhistorisches Museum Wien 20/4. 369-384.
  • Szczepanska, K., Kossowska, M. 2014. The lichen-forming fungi of the Xanthoparmelia pulla group (Parmeliaceae, Ascomycota) in Poland. Acta Societatis Botanicorum Poloniae. 83/1. 59-65.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular biology and evolution, 30/12. 2725-2729.
  • Tufan, O., Sumbul, H., Turk, A. O. 2005. The lichen flora of the Termessos National Park in Southwestern Turkey. Mycotaxon. 94. 43-46.
  • Türk, A. Ö., Halıcı, M. G., Candan, M., Yavuz, Y. 2015. The lichenized fungus genus Peltigera in Turkey. Biodicon. 8/2. 146-156.
  • Webber, P. J., Andrews, J. T. 1973. Lichenometry: a commentary. Arctic and Alpine Research. 5/4. 295-302.
  • Westberg, M., Timdal, E., Asplund, J., Bendiksby, M., Haugan, R., Jonsson, F., Millanes, A. 2015. New records of lichenized and lichenicolous fungi in Scandinavia. MycoKeys. 11. 33-61.
  • Vondrák, J., Halıcı, MG., Güllü, M., Demirel, R. 2016. Taxonomy of the genus Athallia and its diversity in Turkey. Turkish Journal of Botany. 40/3. 319-328.
  • Yazıcı, K., ASLAN, A. 2003. Lichens from the regions of Gümüşhane, Erzincan and Bayburt (Turkey). Cryptogamie. Mycologie. 24/3. 287-300.
  • Yazıcı, K., Etayo, J., Aslan, A. 2011. A note about lichenicolous fungi from Ardahan (Turkey). Cryptogamie, Mycologie. 32/4. 429- 437.

ITS rDNA marker kullanılarak Erciyes Dağı’nın Kayseri, Türkiye bazı likenleşmiş mantar türlerinin tanımlanması

Year 2016, Volume: 9 Issue: 2, 84 - 95, 15.08.2016

Mehmet Ünsal Barak Mehmet Gökhan Halıcı Mithat Güllü

Abstract

Bu çalışmada, Orta Anadolu’da yer alan Erciyes Dağı’nın alpin zonunda yayılış gösteren 9 yaygın likenleşmiş mantar türüne ait örneklerin Aspicilia cinerea, Circinaria contorta, Lecidea atrobrunnea, Lecanora rupicola, Physcia dubia, Rhizoplaca peltata, Rhizocarpon geographicum, Tephromela atra ve Xanthoparmelia pulla ITS dizi analizleri elde edilmiştir. Bu 9 türden elde edilen ITS sekans verileri ileride yapılacak moleküler çalışmalar da kullanılması için Gen Bankası’na yüklenmiştir. Ayrıca Gen Bankası’ndan temin edilen ilişkili türler ile hazırlanan Neighbor-joining dendrogramlar ve çalışılan örneklere ait makroskobik fotoğraflar da verilmiştir. Ayrıca ilişkili türler arasında morfolojik ve ekolojik farklılıklar da tartışılmıştır

Keywords

Liken biyoçeşitlilik sistematik taksonomi

References

  • Armstrong, R. A. 2002. The effect of rock surface aspect on growth, size structure and competition in the lichen Rhizocarpon geographicum. Environmental and Experimental Botany. 48/2. 187-194.
  • Arup, U., Grube, M. 2000. Is Rhizoplaca (Lecanorales, lichenized Ascomycota) a monophyletic genus. Canadian Journal of Botany. 78/3. 318-327.
  • Arup, U., Sİchting, U., Frödén, P. 2013. A new taxonomy of the family Teloschistaceae. Nordic Journal of Botany. 31/1. 16-83.
  • Aslan, A. 2000. Lichens from the regions of Artvin, Erzurum, and Kars (Turkey). Israel Journal of Plant Sciences. 48/2. 143-155.
  • Brodo, I. M., Sharnoff, S. D., Sharnoff, S. 2001. Lichens of North America. Yale University Press. New Haven. USA.
  • Brodo, I. M., Craig, B. 2003. Identifying Mixed Hardwood Forest Lichens, A Reference Notebook. Environment Canada, Canada Centre for Inland Waters, Burlington, Ontario, Canada.
  • Candan, M., Özdemir Türk, A. 2008. Lichens of Malatya, Elazığ and Adıyaman provinces (Turkey). Mycotaxon. 105. 19-22.
  • Çobanoğlu, G., Açıkgöz, B., Baloniu, L. 2013. Contributions to lichen diversity of Turkey from the Sarısu area (Kocaeli). Turkish Journal of Botany. 37. 964-969.
  • De Paz, G. A., Cubas, P., Crespo, A., Elix, J. A., Lumbsch, H. T. 2012. Transoceanic dispersal and subsequent diversification on separate continents shaped diversity of the Xanthoparmelia pulla group (Ascomycota). PloS one, 7/6. e39683.
  • Fryday, A., Coppins, B. 1997. Keys to sterile, crustose saxicolous and terricolous lichens occurring in the British Isles. The Lichenologist. 29/4. 301-332.
  • Galloway, D. J., Moberg, R. 2005. The lichen genus Physcia (Schreb.) Michx.(Physciaceae: Ascomycota) in New Zealand. Tuhinga. 16. 59-91.
  • Giordani, P., Nicora, P., Rellini, I., Brunialti, G., Elix, J. A. 2002. The lichen genus Xanthoparmelia (Ascomycotina, Parmeliaceae) in Italy. The Lichenologist. 34/3. 189-198.
  • Guzow, B., Gamiak, MK., Wegrzyn, G. 2001. Moleculer determination keys: construction of keys for species identification based on restriction fragment length polymorphism. International Archives of Bioscience. 1. 1057-1067.
  • Güvenç, S. 2001. Some lichen records from Kayseri province. Ot Sistematik Botanik Dergisi 8/2. 143–150.
  • Güvenç, Ş., Öztürk, Ş., Aydın, S. 2006. Contributions to the lichen flora of Kastamonu and Sinop Provinces in Turkey. Nova Hedwigia. 83/1-2. 67-98.
  • Halıcı, M. G., John, V. Aksoy, A. 2005. Lichens of Erciyes Mountain (Kayseri, Turkey). Flora Mediterranea. 15. 567-580.
  • Halıcı, M. G., Kocakaya, M., Aksoy, A. 2006. Additional and Interesting Lichenized and Lichenicolous Fungi From Turkey. Mycotaxon, 96. 13-19.
  • Halıcı, M. G., Hawksworth, D.L., Aksoy, A. 2007. New and interesting lichenicolous fungi records from Turkey. Nova Hedwigia. 85. 393-401.
  • Halıcı, M. G., Cansaran Duman, D. 2007. Lichenized and lichenicolous fungi of Yaylacık (Bolu) and Yenice (Karabük) research forests in Turkey. Mycologica Balcanica. 4. 97-103.
  • Halıcı, M. G., Güvenç, Ş. 2008. Lichens from Mediterranean Region of Turkey. Cryptogamiae Mycol. 29. 95–106.
  • Halıcı, M. G., Aksoy, A. 2009. Lichenised and Lichenicolous Fungi of Aladağlar National Park (Niğde, Kayseri and Adana Provinces) in Turkey. Turkish Journal of Botany. 33/3. 169-189.
  • Halıcı, M. G., Candan, M., Güllü, M. 2014. Phoma recepii sp. nov. from the Caloplaca cerina group in Turkey. Mycotaxon, 129/1. 163-168.
  • Hesbacher, S., Fröberg, L., Baur, A., Baur, B., Proksch, P. 1996. Chemical variation within and between individuals of the lichenized ascomycete Tephromela atra. Biochemical systematics and ecology. 24/7. 603-609.
  • John, V. 2002. Lichenes Anatolici Exsiccati. Fasc. 6-7. Arnoldia. 21. 1-28.
  • John, V., Breuss, O. 2004. Flechten der östlichen Schwarzmeer-Region in der Türkei (BLAM-Exkursion 1997). Herzogia. 17. 137- 156.
  • Joshi, Y., Koh, Y. J., Hur, J. S. 2010. Three new records of lichen genus Rhizocarpon from South Korea. Mycobiology. 38/3. 219- 221.
  • Kınalıoğlu, K., Aptroot, A. 2012. Some Lichens From Afyonkarahisar and Kırıkkale Provinces. Gazi University Journal of Science. 25/2. 301-306.
  • Kocakaya, M., Halıcı, M. G., Aksoy, A. 2009. Lichens and lichenicolous fungi of Kızıldağ (Derebucak, Konya). Turkish Journal of Botany. 33/2. 105-112.
  • Lumbsch, H. T., Elix, J. A. 2004. Lecanora. In Flora of Australia. Volume 56A, Lichens. 4. 12–62.
  • Matwiejuk, A. 2012. Rhizocarpon lavatum and R. reductum (Rhizocarpaceae, Ascomycota), two misunderstood taxa found in the Gorce Mts (Polish Carpathians). Acta Mycologica. 47/1. 121-126.
  • Millot, M., Tomasi, S., Sinbandhit, S., Boustie, J. 2008. Phytochemical investigation of Tephromela atra: NMR studies of collatolic acid derivatives. Phytochemistry Letters. 1/3. 139-143.
  • Moberg, R., Hansen, E. S. 1986. The lichen genus Physcia and allied genera in Greenland. Bioscience. 22. 3-11.
  • Moniri, M. H., Kamyabi, S., Clayden, S. R. 2010. A preliminary study of Rhizocarpon macrosporum in Razavi Khorasan Province (NE Iran). The Iranian Journal of Botany. 16/1. 185-189.
  • Muggia, L., Grube, M., Tretiach, M. 2008. Genetic diversity and photobiont associations in selected taxa of the Tephromela atra group (Lecanorales, lichenised Ascomycota). Mycological Progress 7/3. 147-160.
  • Nash, T. H. 2002. Lichen flora of the greater Sonoran desert region. Lichens Unlimited. Arizona State University. Arizona. USA.
  • Nimis, P. L., John, V. 1998. A contribution to the lichen flora of Mediterranean Turkey. Cryptogamie. Bryologie, lichénologie. 19/1. 35-58.
  • Nordin, A., Tibell, L. Owe-Larsson, B. 2007. A preliminary phylogeny of Aspicilia in relation to morphological and secondary product variation. In: Lichenologische Nebenstunden: Contributions to lichen taxonomy and ecology in honour of Klaus Kalb. 247-266.
  • Oran, S., Uğur, A., Öztürk, Ş. 2007. Some Lichen Records From Quercus vulcanica Forests Around Yukarı Gökdere (Isparta, Turkey). J. Biol. Environ. Sci. 1/3. 121-126.
  • Pérez-Vargas, I., Padrón, C. H., de Paz, P., Pedro, L., Elix, J. A. 2010. Tephromela follmannii (lichenized Ascomycota), a new species from the Canary Islands. Mycotaxon. 112/1. 9-14.
  • Pisut, I., 1970. Interessante flechtenfunde aus der Türkei. Preslia (Praha). 42. 379-383.
  • Purvis, O. W. 1992. Lichen Flora of Great Britain and Ireland. Natural History Museum Publications in association with the British Lichen Society.
  • Rigler, L. 1852. Die Türkei und deren Bewohner, in ihren naturhistorischen, physiologischen und pathologischen Verthältnissen vom Standpunkte Constantinopel’s. Wien 1: 110.
  • Roux, C. 2012. Liste des lichens et champignons lichénicoles de France. Bull. Soc. Linn. Provence. 16/3. 3-220.
  • Ruprecht, U., Lumbsch, H. T., Brunauer, G., Green, T. G., Türk, R. 2010. Diversity of Lecidea (Lecideaceae, Ascomycota) species revealed by molecular data and morphological characters. Antarctic Science. 22/06. 727-741.
  • Seppelt, R. D., Green, T. G. A., Schroeter, B. 1996. Additions and corrections to the lichen flora of the Kar Plateau, Southern Victoria Land, Antarctica. New Zealand Journal of Botany. 34/3. 329-331.
  • Steiner, J. 1905. Lichenes. In: Ergebnisse einer naturwissensch. Reise zum Erschias-Dagh (Kleinasien) von Dr. Arnold Penter und dr. Emerich Zederbauer im Jahre 1902. Ann. Naturhistorisches Museum Wien 20/4. 369-384.
  • Szczepanska, K., Kossowska, M. 2014. The lichen-forming fungi of the Xanthoparmelia pulla group (Parmeliaceae, Ascomycota) in Poland. Acta Societatis Botanicorum Poloniae. 83/1. 59-65.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular biology and evolution, 30/12. 2725-2729.
  • Tufan, O., Sumbul, H., Turk, A. O. 2005. The lichen flora of the Termessos National Park in Southwestern Turkey. Mycotaxon. 94. 43-46.
  • Türk, A. Ö., Halıcı, M. G., Candan, M., Yavuz, Y. 2015. The lichenized fungus genus Peltigera in Turkey. Biodicon. 8/2. 146-156.
  • Webber, P. J., Andrews, J. T. 1973. Lichenometry: a commentary. Arctic and Alpine Research. 5/4. 295-302.
  • Westberg, M., Timdal, E., Asplund, J., Bendiksby, M., Haugan, R., Jonsson, F., Millanes, A. 2015. New records of lichenized and lichenicolous fungi in Scandinavia. MycoKeys. 11. 33-61.
  • Vondrák, J., Halıcı, MG., Güllü, M., Demirel, R. 2016. Taxonomy of the genus Athallia and its diversity in Turkey. Turkish Journal of Botany. 40/3. 319-328.
  • Yazıcı, K., ASLAN, A. 2003. Lichens from the regions of Gümüşhane, Erzincan and Bayburt (Turkey). Cryptogamie. Mycologie. 24/3. 287-300.
  • Yazıcı, K., Etayo, J., Aslan, A. 2011. A note about lichenicolous fungi from Ardahan (Turkey). Cryptogamie, Mycologie. 32/4. 429- 437.
There are 55 citations in total.

Details

Primary Language English
Journal Section Research Article
Authors

Mehmet Ünsal Barak This is me

Mehmet Gökhan Halıcı This is me

Mithat Güllü This is me

Publication Date August 15, 2016
Published in Issue Year 2016 Volume: 9 Issue: 2

Cite

APA Barak, M. Ü., Halıcı, M. G., & Güllü, M. (2016). Identification of some lichenized fungi species of Erciyes Mountain Kayseri/Turkey by using ITS rDNA marker. Biological Diversity and Conservation, 9(2), 84-95.
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