Bilgisayarlı tomografi görüntülerinden elde edilen cranium parametreleri ile geometrik morfometri kullanılarak cinsiyet tahmini
Year 2024,
Volume: 49 Issue: 3, 769 - 778, 30.09.2024
Yusuf Seçgin
,
Zülal Öner
,
Serkan Öner
,
Şeyma Toy
Abstract
Amaç: Cranium iskeletinin cinsiyet farklılığı adli antropoloji ve adli tıp bilimlerinde büyük önem taşımaktadır. Bu çalışma bu hipotezden yola çıkılarak bilgisayarlı tomografiden (BT) elde edilen cranium görüntülerinin geometrik morfometri yöntemi kullanılarak işlenmesi ile cinsiyet tahmin oranı elde edilmiştir.
Gereç ve Yöntem: Çalışmamızda yaşları 25 ile 65 arasında değişen 200 bireye ait BT görüntüleri kullanıldı. Görüntüler kişisel iş istasyonu Horos Medical Image Viewer (Version 3.0, USA) programında açıldı ve 3D Curved Multiplanar Reconstruction (MPR) ile işlendi. İşlem sonucunda elde edilen görüntülerin nasion ve inion noktalarından geçen hat belirlenerek tüm görüntüler ortogonal düzleme getirildi. Daha sonra görüntüler üst üste bindirilerek %100 büyütme ile JPEG formatında kaydedildi. Kaydedilen JPEG görüntüler TPS formatına dönüştürülerek 21 adet homolog landmark yerleştirildi. Yer işaretlerinin koordinatlarına Genelleştirilmiş Procrustes Analizi (GPA) ve Temel Bileşen Analizi (PCA) uygulanmış ve görüntüler ağırlık merkezine toplanarak şekil varyasyonları ve boyutsallık düzeltilmiştir. Ardından, boyutsallığı düzeltilen koordinatlara Doğrusal Diskriminant Analizi (LDA) uygulanmıştır.
Bulgular: Çalışmada, ağırlık merkezine toplanan 21 homolog noktasının koordinatlarının %74,465'inin ilk üç PC ile açıklanabildiği bulunmuştur. Bu koordinatlara uygulanan LDA sonucunda %86,5'lik bir cinsiyet tahmin oranı elde edilmiştir. Ayrıca, GPA kareler toplamı ile tanjant kareler toplamı arasında küçük bir fark bulunmuştur (0,57).
Sonuç: Çalışmamız sonucunda BT'den elde edilen cranium’a ait görüntülerin geometrik morfometri analizi ile yüksek bir dimorfizm gösterdiği tespit edilmiştir.
References
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- Chovalopoulou M-E, Valakos ED, Manolis SK. Sex determination by three-dimensional geometric morphometrics of the palate and cranial base. Anthropol Anz. 2013;70:407-25.
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- Secgin Y, Oner Z, Turan MK, Oner S. Gender prediction with the parameters obtained from pelvis computed tomography images and machine learning algorithms. J Anat Soc India. 2022;71:204.
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- Chatthai N, Sangchay N, Piyaman P, Pattarapanitchai P, Chomean S, Kaset C. Sex determination from foramen magnum parameters in Thai cadaveric donor. Forensic Science International: Reports. 2024;9:100371.
- Boussaid M, Brahim O, Bouanen I et al. Sex determination by Ct–scan analysis of the mastoid bone: A cross-sectional study. Heliyon. 2024;10:e33712.
- Torimitsu S, Nakazawa A, Flavel A. et al. Estimation of ancestry from cranial measurements based on MDCT data acquired in a japanese and western australian population. Int J Legal Med. 2024;138:1193-1203.
- Toneva D, Nikolova S, Tasheva-Terzieva E, Zlatareva D, Lazarov N. A Geometric morphometric study on sexual dimorphism in viscerocranium. Biology. 2022;11:1333.
- Gonzalez P, Bernal V, Perez S. Analysis of sexual dimorphism of craniofacial traits using geometric morphometric techniques. Int J Osteoarchaeol. 2011;21:82-91.
- Djorojevic M, Roldán C, García-Parra P, Alemán I, Botella M. Morphometric sex estimation from 3D computed tomography os coxae model and its validation in skeletal remains. Int J Legal Med. 2014;128:879-88.
- Mitteroecker P, Gunz P. Advances in geometric morphometrics. BMC Evol Biol. 2009;36:235-47.
- Bookstein FL. Principal warps: Thin-plate splines and the decomposition of deformations. IEEE Trans Pattern Anal Mach Intell. 1989;11:567-85.
- Rohlf FJ, Marcus LF. A revolution morphometrics. Trends Ecol Evol. 1993;8:129-32.
- Adams DC, Rohlf FJ, Slice DE. Geometric morphometrics: ten years of progress following the ‘revolution’. Ital J Zool (Modena). 2004;71:5-16.
- Slice DE. Geometric morphometrics. Annu Rev Anthropol. 2007;36:261-81.
- Weisensee KE, Jantz RL. Secular changes in craniofacial morphology of the portuguese using geometric morphometrics. Am J Phys Anthropol. 2011;145:548-59.
- Toneva DH, Nikolova SY, Tasheva-Terzieva ED, Zlatareva DK, Lazarov NE. Sexual dimorphism in shape and size of the neurocranium. Int J Legal Med. 2022;136:1851-63.
- Daboul A, Ivanovska T, Bülow R, Biffar R, Cardini A. Procrustes-based geometric morphometrics on MRI images: An example of inter-operator bias in 3D landmarks and its impact on big datasets. PloS One. 2018;13:e0197675.
- Feldkamp LA, Goldstein SA, Parfitt MA, Jesion G, Kleerekoper M. The direct examination of three‐dimensional bone architecture in vitro by computed tomography. J Bone Miner Res. 1989;4:3-11.
- Rohlf F. Tps series of software. Hystrix, the Italian Journal of Mammalogy. 2015; doi: :10.4404/hystrix-26.1-11264.
- Rohlf F. Tps Series. Department of Ecology and Evolution, State University of New York, Stony Brook, 2017.
- Hammer Ø, Harper DA, Ryan PD. PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electronica. 2001;4:4.
- Bookstein FL. Morphometric Tools for Landmark Data. Cambridge, UK, Cambridge University Press, 1992.
- Klingenberg CP. MorphoJ: an integrated software package for geometric morphometrics. Mol Ecol Resour. 2011;11:353-7.
- Secgin Y, Oner Z, Turan MK, Oner S. Gender prediction with parameters obtained from pelvis computed tomography images and decision tree algorithm. Medicine Science. 2021;10:356-61.
- Turan MK, Oner Z, Secgin Y, Oner S. A trial on artificial neural networks in predicting sex through bone length measurements on the first and fifth phalanges and metatarsals. Comput Biol Med. 2019;115:103490.
- Mahfouz M, Badawi A, Merkl B, Fatah EE, Pritchard E, Kesler K et al. Patella sex determination by 3D statistical shape models and nonlinear classifiers. Forensic Sci Int. 2007;173:161-70.
- Steyn M, İşcan MY. Sex determination from the femur and tibia in South African whites. Forensic Sci Int. 1997;90:111-9.
- Oner Z, Turan MK, Oner S, Secgin Y, Sahin B. Sex estimation using sternum part lenghts by means of artificial neural networks. Forensic Sci Int. 2019;301:6-11.
- Ishwarkumar S, Pillay P, Haffajee M, Rennie C. Sex determination using morphometric and morphological dimensions of the clavicle within the KwaZulu-Natal population. Int. J. Morphol. 2016;34:244-51.
- Steyn M, İşcan MY. Metric sex determination from the pelvis in modern greeks. Forensic Sci Int. 2008;179:86.e1-86.e6.
- Franklin D, O'Higgins P, Oxnard CE, Dadour I. Determination of sex in South African blacks by discriminant function analysis of mandibular linear dimensions. Forensic Sci Med Pathol. 2006;2:263-8.
- Kim DI, Kim YS, Lee UY, Han SH. Sex determination from calcaneus in Korean using discriminant analysis. Forensic Sci Int. 2013;228:177.e171-177.e177.
- Cooke SB, Terhune CE. Form, function, and geometric morphometrics. Anat Rec. 2015;298:5-28.
- Webster M, Sheets HD. A practical introduction to landmark-based geometric morphometrics. Paleontological Society Papers. 2010;16:163-88.
- Chovalopoulou M-E, Valakos ED, Manolis SK. Sex determination by three-dimensional geometric morphometrics of the palate and cranial base. Anthropol Anz. 2013;70:407-25
- Gillet C, Costa-Mendes L, Rérolle C, Telmon N, Maret D, Savall F. Sex estimation in the cranium and mandible: a multislice computed tomography (MSCT) study using anthropometric and geometric morphometry methods. Int J Legal Med. 2020;134:823-32.
- Musilová B, Dupej J, Velemínská J, Chaumoitre K, Bruzek J. Exocranial surfaces for sex assessment of the human cranium. Forensic Sci Int. 2016;269:70-7.
- Gillet C, Costa-Mendes L, Rérolle C, Telmon N, Maret D, Savall F. Sex estimation in the cranium and mandible: a multislice computed tomography (MSCT) study using anthropometric and geometric morphometry methods. Int J Legal Med. 2020;134:823-32.
- Chovalopoulou M-E, Valakos ED, Manolis SK. Sex determination by three-dimensional geometric morphometrics of the vault and midsagittal curve of the neurocranium in a modern greek population sample. Homo. 2016;67:173-87.
- Kimmerle EH, Ross A, Slice D. Sexual dimorphism in America: geometric morphometric analysis of the craniofacial region. J Forensic Sci. 2008;53:54-7.
- Inoue M, Inoue T, Fushimi Y, Okada K. Sex determination by discriminant function-analysis of lateral cranial form. Forensic Sci Int.1992;57:109-17
Gender prediction using geometric morphometry with parameters of the cranium obtained from computed tomography images
Year 2024,
Volume: 49 Issue: 3, 769 - 778, 30.09.2024
Yusuf Seçgin
,
Zülal Öner
,
Serkan Öner
,
Şeyma Toy
Abstract
Purpose: The gender difference of the cranium skeleton is of great importance in forensic anthropology and forensic medicine sciences. This study is based on this hypothesis and the gender prediction rate was obtained by processing cranium images obtained from computed tomography (CT) using geometric morphometry.
Materials and Methods: CT images of 200 individuals between the ages of 25 and 65 were used in our study. The images were opened at the personal workstation Horos Medical Image Viewer (Version 3.0, USA) program and processed with 3D Curved Multiplanar Reconstruction (MPR). The line passing through the nasion and inion points of the images obtained as a result of the process was determined, and all images were brought to the orthogonal plane. Later, the images were overlapped and saved in JPEG format with 100% magnification. JPEG images saved were converted into TPS format, and 21 homologous landmarks were placed. Generalized Procrustes Analysis (GPA) and Principal Component Analysis (PCA) were applied to the coordinates of landmarks, and shape variations and dimensionality were corrected by gathering the images to the center of gravity. Next, Linear Discriminant Analysis (LDA) was applied to the coordinates, the dimensionality of which was corrected.
Results: The study found that 74.465% of the coordinates of 21 homologous landmarks gathered to the center of gravity could be explained with the first three PCs. As a result of the LDA applied to these coordinates, a gender prediction rate of 86.5% was obtained. In addition, a slight difference was found between the GPA sum of squares and the tangent sum of squares (0.57).
Conclusion: The images of the cranium obtained from CT showed a high dimorphism by geometric morphometry analysis.
Ethical Statement
This study was conducted with the 727 numbered decision of İzmir Bakırçay University Non-Interventional Local Ethics Committee.
Thanks
I would like to thank all the authors who contributed.
References
- Benazzi S, Stansfield E, Milani C, Gruppioni G. Geometric morphometric methods for three-dimensional virtual reconstruction of a fragmented cranium: the case of angelo poliziano. Int J Legal Med. 2009;123:333-44.
- Chovalopoulou M-E, Valakos ED, Manolis SK. Sex determination by three-dimensional geometric morphometrics of the palate and cranial base. Anthropol Anz. 2013;70:407-25.
- Toy S, Secgin Y, Oner Z, Turan MK, Oner S, Senol D. A study on sex estimation by using machine learning algorithms with parameters obtained from computerized tomography images of the cranium. Sci Rep. 2022;12:4278.
- Secgin Y, Oner Z, Turan MK, Oner S. Gender prediction with the parameters obtained from pelvis computed tomography images and machine learning algorithms. J Anat Soc India. 2022;71:204.
- Lye R, Obertová Z, Bachtiar NA, Franklin D. Validating the use of clinical MSCT scans for cranial nonmetric sex estimation in a contemporary Indonesian population. Int J Legal Med. 2024;138:1559-71.
- Chatthai N, Sangchay N, Piyaman P, Pattarapanitchai P, Chomean S, Kaset C. Sex determination from foramen magnum parameters in Thai cadaveric donor. Forensic Science International: Reports. 2024;9:100371.
- Boussaid M, Brahim O, Bouanen I et al. Sex determination by Ct–scan analysis of the mastoid bone: A cross-sectional study. Heliyon. 2024;10:e33712.
- Torimitsu S, Nakazawa A, Flavel A. et al. Estimation of ancestry from cranial measurements based on MDCT data acquired in a japanese and western australian population. Int J Legal Med. 2024;138:1193-1203.
- Toneva D, Nikolova S, Tasheva-Terzieva E, Zlatareva D, Lazarov N. A Geometric morphometric study on sexual dimorphism in viscerocranium. Biology. 2022;11:1333.
- Gonzalez P, Bernal V, Perez S. Analysis of sexual dimorphism of craniofacial traits using geometric morphometric techniques. Int J Osteoarchaeol. 2011;21:82-91.
- Djorojevic M, Roldán C, García-Parra P, Alemán I, Botella M. Morphometric sex estimation from 3D computed tomography os coxae model and its validation in skeletal remains. Int J Legal Med. 2014;128:879-88.
- Mitteroecker P, Gunz P. Advances in geometric morphometrics. BMC Evol Biol. 2009;36:235-47.
- Bookstein FL. Principal warps: Thin-plate splines and the decomposition of deformations. IEEE Trans Pattern Anal Mach Intell. 1989;11:567-85.
- Rohlf FJ, Marcus LF. A revolution morphometrics. Trends Ecol Evol. 1993;8:129-32.
- Adams DC, Rohlf FJ, Slice DE. Geometric morphometrics: ten years of progress following the ‘revolution’. Ital J Zool (Modena). 2004;71:5-16.
- Slice DE. Geometric morphometrics. Annu Rev Anthropol. 2007;36:261-81.
- Weisensee KE, Jantz RL. Secular changes in craniofacial morphology of the portuguese using geometric morphometrics. Am J Phys Anthropol. 2011;145:548-59.
- Toneva DH, Nikolova SY, Tasheva-Terzieva ED, Zlatareva DK, Lazarov NE. Sexual dimorphism in shape and size of the neurocranium. Int J Legal Med. 2022;136:1851-63.
- Daboul A, Ivanovska T, Bülow R, Biffar R, Cardini A. Procrustes-based geometric morphometrics on MRI images: An example of inter-operator bias in 3D landmarks and its impact on big datasets. PloS One. 2018;13:e0197675.
- Feldkamp LA, Goldstein SA, Parfitt MA, Jesion G, Kleerekoper M. The direct examination of three‐dimensional bone architecture in vitro by computed tomography. J Bone Miner Res. 1989;4:3-11.
- Rohlf F. Tps series of software. Hystrix, the Italian Journal of Mammalogy. 2015; doi: :10.4404/hystrix-26.1-11264.
- Rohlf F. Tps Series. Department of Ecology and Evolution, State University of New York, Stony Brook, 2017.
- Hammer Ø, Harper DA, Ryan PD. PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electronica. 2001;4:4.
- Bookstein FL. Morphometric Tools for Landmark Data. Cambridge, UK, Cambridge University Press, 1992.
- Klingenberg CP. MorphoJ: an integrated software package for geometric morphometrics. Mol Ecol Resour. 2011;11:353-7.
- Secgin Y, Oner Z, Turan MK, Oner S. Gender prediction with parameters obtained from pelvis computed tomography images and decision tree algorithm. Medicine Science. 2021;10:356-61.
- Turan MK, Oner Z, Secgin Y, Oner S. A trial on artificial neural networks in predicting sex through bone length measurements on the first and fifth phalanges and metatarsals. Comput Biol Med. 2019;115:103490.
- Mahfouz M, Badawi A, Merkl B, Fatah EE, Pritchard E, Kesler K et al. Patella sex determination by 3D statistical shape models and nonlinear classifiers. Forensic Sci Int. 2007;173:161-70.
- Steyn M, İşcan MY. Sex determination from the femur and tibia in South African whites. Forensic Sci Int. 1997;90:111-9.
- Oner Z, Turan MK, Oner S, Secgin Y, Sahin B. Sex estimation using sternum part lenghts by means of artificial neural networks. Forensic Sci Int. 2019;301:6-11.
- Ishwarkumar S, Pillay P, Haffajee M, Rennie C. Sex determination using morphometric and morphological dimensions of the clavicle within the KwaZulu-Natal population. Int. J. Morphol. 2016;34:244-51.
- Steyn M, İşcan MY. Metric sex determination from the pelvis in modern greeks. Forensic Sci Int. 2008;179:86.e1-86.e6.
- Franklin D, O'Higgins P, Oxnard CE, Dadour I. Determination of sex in South African blacks by discriminant function analysis of mandibular linear dimensions. Forensic Sci Med Pathol. 2006;2:263-8.
- Kim DI, Kim YS, Lee UY, Han SH. Sex determination from calcaneus in Korean using discriminant analysis. Forensic Sci Int. 2013;228:177.e171-177.e177.
- Cooke SB, Terhune CE. Form, function, and geometric morphometrics. Anat Rec. 2015;298:5-28.
- Webster M, Sheets HD. A practical introduction to landmark-based geometric morphometrics. Paleontological Society Papers. 2010;16:163-88.
- Chovalopoulou M-E, Valakos ED, Manolis SK. Sex determination by three-dimensional geometric morphometrics of the palate and cranial base. Anthropol Anz. 2013;70:407-25
- Gillet C, Costa-Mendes L, Rérolle C, Telmon N, Maret D, Savall F. Sex estimation in the cranium and mandible: a multislice computed tomography (MSCT) study using anthropometric and geometric morphometry methods. Int J Legal Med. 2020;134:823-32.
- Musilová B, Dupej J, Velemínská J, Chaumoitre K, Bruzek J. Exocranial surfaces for sex assessment of the human cranium. Forensic Sci Int. 2016;269:70-7.
- Gillet C, Costa-Mendes L, Rérolle C, Telmon N, Maret D, Savall F. Sex estimation in the cranium and mandible: a multislice computed tomography (MSCT) study using anthropometric and geometric morphometry methods. Int J Legal Med. 2020;134:823-32.
- Chovalopoulou M-E, Valakos ED, Manolis SK. Sex determination by three-dimensional geometric morphometrics of the vault and midsagittal curve of the neurocranium in a modern greek population sample. Homo. 2016;67:173-87.
- Kimmerle EH, Ross A, Slice D. Sexual dimorphism in America: geometric morphometric analysis of the craniofacial region. J Forensic Sci. 2008;53:54-7.
- Inoue M, Inoue T, Fushimi Y, Okada K. Sex determination by discriminant function-analysis of lateral cranial form. Forensic Sci Int.1992;57:109-17