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Why lncRNAs were not conserved? Is it for adaptation?

Yıl 2021, , 103 - 110, 30.12.2021
https://doi.org/10.51753/flsrt.1027595

Öz

Plants are sessile organisms affected by changing environment, especially biotic and abiotic stress. Long non-coding RNAs (lncRNAs) became prominent as crucial regulators in diverse biological mechanisms, including developmental processes and stress responses such as salinity. In this study, salinity related lncRNAs were sequenced and analyzed according to homology based on rice and maize lncRNA sequences. After sequencing, 72HASATROOT and 72TARMROOT were identified as 568 bp, additionally, 72HASATSHOOT and 72TARMSHOOT were also 568 bp according to reference sequence which are the member of the natural-antisense lncRNA with 565 bp. Besides, 77HASATROOT and 77TARMROOT were identified as 676 and 644 bp, additionally, 77HASATSHOOT and 77TARMSHOOT were 666 bp according to reference sequence alignment that reference sequence was 667 bp and the sno-lncRNA member. Sequencing studies demonstrated sequence alterations resulted in secondary structure changes which may affect the adaptation of varieties in response to stress. As a conclusion, rapid evolution of lncRNAs may be another force for adaptation to changing environment in plants.

Destekleyen Kurum

The author received no financial support for the research, authorship, and/or publication of this article.

Kaynakça

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Yıl 2021, , 103 - 110, 30.12.2021
https://doi.org/10.51753/flsrt.1027595

Öz

Kaynakça

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  • Ariel, F., Jegu, T., Latrasse, D., Romero-Barrios, N., Christ, A., Benhamed, M., & Crespi, M. (2014). Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop. Molecular Cell, 55(3), 383-396. https://doi.org/10.1016/j.molcel.2014.06.011
  • Boisvert, F. M., van Koningsbruggen, S., Navascués, J., & Lamond, A. I. (2007). The multifunctional nucleolus. Nature Reviews Molecular Cell Biology, 8(7), 574-585. https://doi.org/10.1038/nrm2184
  • Cartegni, L. (2003). ESEfinder: a web resource to identify exonic splicing enhancers. Nucleic Acids Research, 31(13), 3568-3571. https://doi.org/10.1093/nar/gkg616
  • Chekanova, J. A. (2015). Long non-coding RNAs and their functions in plants. Current Opinion in Plant Biology, 27, 207-216. https://doi.org/10.1016/j.pbi.2015.08.003
  • Chen, L. L., & Carmichael, G. G. (2010). Long noncoding RNAs in mammalian cells: what, where, and why? Wiley Interdisciplinary Reviews: RNA, 1(1), 2-21. https://doi.org/10.1002/wrna.5
  • Chen, L. L., & Carmichael, G. G. (2009). Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. Molecular Cell, 35(4), 467-478. https://doi.org/10.1016/j.molcel.2009.06.027
  • Cruz, J. A., & Westhof, E. (2009). The dynamic landscapes of RNA architecture. Cell, 136(4), 604-609. https://doi.org/10.1016/j.cell.2009.02.003
  • Diederichs, S. (2014). The four dimensions of noncoding RNA conservation. Trends in Genetics, 30(4), 121-123. https://doi.org/10.1016/j.tig.2014.01.004
  • Dikaya, V., El Arbi, N., Rojas-Murcia, N., Nardeli, S. M., Goretti, D., & Schmid, M. (2021). Insights into the role of alternative splicing in plant temperature response. Journal of Experimental Botany, 72(21), 7384-7403. https://doi.org/10.1093/jxb/erab234
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  • Fanucchi, S., Fok, E. T., Dalla, E., Shibayama, Y., Börner, K., Chang, E. Y., ... & Mhlanga, M. M. (2019). Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments. Nature Genetics, 51(1), 138-150. https://doi.org/10.1038/s41588-018-0298-2
  • Flynn, R. A., & Chang, H. Y. (2014). Long noncoding RNAs in cell-fate programming and reprogramming. Cell Stem Cell, 14(6), 752-761. https://doi.org/10.1016/j.stem.2014.05.014
  • Ganguly, P., Roy, D., Das, T., Kundu, A., Cartieaux, F., Ghosh, Z., & DasGupta, M. (2021). The natural antisense transcript DONE40 derived from the lncRNA ENOD40 locus interacts with SET domain protein ASHR3 during inception of symbiosis in Arachis hypogaea. Molecular Plant-Microbe Interactions, 34(9), 1057-1070. https://doi.org/10.1094/mpmi-12-20-0357-r
  • Ghorbani, F., Abolghasemi, R., Haghighi, M., Etemadi, N., Wang, S., Karimi, M., & Soorni, A. (2021). Global identification of long non-coding RNAs involved in the induction of spinach flowering. BMC Genomics, 22(1). https://doi.org/10.1186/s12864-021-07989-1
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Toplam 74 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Genetik
Bölüm Araştırma Makaleleri
Yazarlar

Elif Karlık 0000-0003-0669-2725

Yayımlanma Tarihi 30 Aralık 2021
Gönderilme Tarihi 23 Kasım 2021
Yayımlandığı Sayı Yıl 2021

Kaynak Göster

APA Karlık, E. (2021). Why lncRNAs were not conserved? Is it for adaptation?. Frontiers in Life Sciences and Related Technologies, 2(3), 103-110. https://doi.org/10.51753/flsrt.1027595

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