Phylogenetic Analysis of Origanum vulgare and Its Antioxidant and Antimicrobial Activity
Year 2021,
, 311 - 325, 01.06.2021
Arzu Özgen
,
Nurcihan Tan
,
Ömer Taştan
Funda Pehlevan
Abstract
Our country is home to many endemic plant species including medicinal, aromatic and spice. One of these species is thyme plant used both in daily life and for medical purposes. One of the most popular methods of phylogenetic classification of plants is the internal transcribed spacer (ITS) region which locates between the ITS1 and ITS2 regions that highly conserved. In this paper, a thyme species was used, which grows naturally in Sultan Murat Sarıkaya High-plateau in eastern Black Sea Region (Turkey) and phylogenetic analysis of oregano plant was carried out and antioxidant and antibacterial activity was investigated. The assessment of the antioxidant activity of the plant was researched using DPPH method using plant excretes prepared at various time intervals. The antibacterial activity of plant was studied by using disc diffusion and minimum inhibitory concentration (MIC) methods against Gram (+) and Gram (-) bacteria. The phylogenetic analysis was performed by obtaining the genomic DNA of the plant by the analysis of the specific DNA sequences used in the species identification, and the species of the plant was identified as Origanum vulgare and was identified as MH174928.1 (Origanum vulgare isolate SRY61) from Gen Bank. O. vulgare showed a high rate of antioxidant properties and showed antibacterial effect in accordance with the literature.
Supporting Institution
Istanbul Gelisim University, The Scientific Research Projects Application And Research Center, BAPUM
Project Number
YUP-080518-AÖ
Thanks
Department of Medical Microbiology, Faculty of Medicine, Acıbadem Mehmet Ali Aydınlar University
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Year 2021,
, 311 - 325, 01.06.2021
Arzu Özgen
,
Nurcihan Tan
,
Ömer Taştan
Funda Pehlevan
Project Number
YUP-080518-AÖ
References
- [1] Elezi, F., Plaku, F., Ibraliu, A., Stefkov, G., Karapandzova, M., Kulevanova, S., Aliu, S., “Genetic variation of oregano (Origanum vulgare L.) for etheric oil in Albania”, Agricultural Sciences, 4(09): 449, (2013).
- [2] Temel, M., Tokur, S., “Origanum vulgare L. (Lamiaceae) üç alttürünün korolojisi ve habitat özellikleri”, Journal of the Institute of Science & Technology of Dumlupinar University/Dumlupinar Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 33: 53-64, (2014).
- [3] Lemhadri, A., Zeggwagh, N. A., Maghrani, M., Jouad, H., Eddouks, M., “Anti-hyperglycaemic activity of the aqueous extract of Origanum vulgare growing wild in Tafilalet region”, Journal of ethnopharmacology, 92(2-3): 251-256, (2004).
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- [17] Abdul, Q. M., Shahzadi, S. K., Bashir, A., Munir, A., Shahzad, S., “Evaluation of phenolic compounds and antioxidant and antimicrobial activities of some common herbs”, International Journal of Analytical Chemistry, 2017: 1-7, (2017).
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- [19] Gould, I. M., “The epidemiology of antibiotic resistance”, International Journal of Antimicrobial Agents, 32: 2-9, (2008).
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- [22] Nash, R. J., Kato, A., Yu, C. Y., Fleet, G. W., “Iminosugars as therapeutic agents: recent advances and promising trends”, Future Medicinal Chemistry, 3(12): 1513-1521, (2011).
- [23] Tagboto, S., Townson, S., “Antiparasitic properties of medicinal plants and other naturally occurring products”, Advances in Parasitology, 50: 199-295, (2001).
- [24] Savoia, D., “Plant-derived antimicrobial compounds: alternatives to antibiotics”, Future Microbiology, 7(8): 979-990, (2012).
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- [28] Ultee, A., Bennik, M. H. J., Moezelaar, R. J. A. E. M., “The phenolic hydroxyl group of carvacrol is essential for action against the food-borne pathogen Bacillus cereus”, Appl. Environ. Microbiol., 68(4): 1561-1568, (2002).
- [29] Palaniappan, K., Holley, R. A., “Use of natural antimicrobials to increase antibiotic susceptibility of drug resistant bacteria”, International Journal of Food Microbiology, 140(2-3): 164-168, (2010).
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- [31] Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K., “MEGA X: molecular evolutionary genetics analysis across computing platforms”, Molecular Biology and Evolution, 35(6): 1547-1549, (2018).
- [32] Stecher, G., Tamura, K., Kumar, S., “Molecular evolutionary genetics analysis (MEGA) for macOS”, Molecular Biology and Evolution, 37(4): 1237-1239, (2020).
- [33] Walker, J. B., Sytsma, K. J., “Staminal evolution in the genus Salvia (Lamiaceae): molecular phylogenetic evidence for multiple origins of the staminal lever”, Annals of Botany, 100(2): 375-391, (2007).
- [34] Bräuchler, C., Meimberg, H., Heubl, G., “Molecular phylogeny of Menthinae (Lamiaceae, Nepetoideae, Mentheae)-Taxonomy, biogeography and conflicts”, Molecular Phylogenetics and Evolution, 55(2): 501-523, (2010).
- [35] Drew, B. T., Sytsma, K. J., “Phylogenetics, biogeography, and staminal evolution in the tribe Mentheae (Lamiaceae)”, American journal of botany, 99(5): 933-953, (2012).
- [36] Tung, Y. T., Wu, J. H., Kuo, Y. H., Chang, S. T., “Antioxidant activities of natural phenolic compounds from Acacia confusa bark”, Bioresource Technology, 98(5): 1120-1123, (2007).
- [37] Brand-Williams, W., Cuvelier, M. E., Berset, C., “Use of a free radical method to evaluate antioxidant activity”, Food Science and Technology–Lebensmittel Wissenschaft und Technologie, 28: 25-30, (1995).
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- [39] Russell, A. D., Furr, J. R., “The antibacterial activity of a new chloroxylenol preparation containing ethylenediamine tetraacetic acid”, Journal of Applied Bacteriology, 43(2): 253-260, (1977).
- [40] Irobi, O. N., Moo-Young, M., Anderson, W. A., Daramola, S. O., “Antimicrobial activity of bark extracts of Bridelia ferruginea (Euphorbiaceae)”, Journal of Ethnopharmacology, 43(3): 185-190, (1994).
- [41] Clinical and Laboratory Standards Institute, “Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically; approved standard”, 9 th ed., CLSI document M07-A9, Wayne, 68, (2012).
- [42] National Committee for Clinical Laboratory Standards, “Performance Standards for Antimicrobial Susceptibility Testing”, 12 th ed., Informational Supplement M100-S12, NCCLS, Wayne, PA, (2002).
- [43] Baldwin, B. G., Sanderson, M. J., Porter, J. M., Wojciechowski, M. F., Campbell, C. S., Donoghue, M. J., “The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny”, Annals of the Missouri Botanical Garden, 82(2): 247-277, (1995).
- [44] Poczai, P., Hyvönen, J., “Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects”, Molecular Biology Reports, 37(4): 1897-1912, (2010).
- [45] Álvarez, I., Wendel, J. F., “Ribosomal ITS sequences and plant phylogenetic inference”, Molecular Phylogenetics and Evolution, 29(3): 417-434, (2003).
- [46] Stecher, G., Tamura, K., Kumar, S., “Molecular evolutionary genetics analysis (MEGA) for macOS”, Molecular Biology and Evolution, 37(4): 1237-1239, (2020).
- [47] Commoner, B., Townsend, J., Pake, G. E., “Free radicals in biological materials”, Nature, 174(4432): 689-691, (1954).
- [48] Dupont, G. P., Huecksteadt, T. P., Marshall, B. C., Ryan, U. S., Michael, J. R., Hoidal, J. R., “Regulation of xanthine dehydrogenase and xanthine oxidase activity and gene expression in cultured rat pulmonary endothelial cells”, The Journal of Clinical İnvestigation, 89(1): 197-202, (1992).
- [49] Rodriguez-Garcia, I., Silva-Espinoza, B. A., Ortega-Ramirez, L. A., Leyva, J. M., Siddiqui, M. W., Cruz-Valenzuela, M. R., Ayala-Zavala, J. F., “Oregano essential oil as an antimicrobial and antioxidant additive in food products”, Critical Reviews in Food Science and Nutrition, 56(10): 1717-1727, (2016).
- [50] Suzuki, N., Rivero, R. M., Shulaev, V., Blumwald, E., Mittler, R., “Abiotic and biotic stress combinations”, New Phytologist, 203(1): 32-43, (2014).
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