Araştırma Makalesi

Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule

Cilt: 14 Sayı: 3 1 Eylül 2024
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Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule

Öz

In this study, we performed HOMO-LUMO energy calculations, molecular electrostatic potential surface (MEPS), optimized molecular geometry using B3LYP, B3PW91 methods and 6-311G(d,p) basis set of the target molecule (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl) acrylate (MMDA) that is an isatin derivative, nonlinear optics (NLO), NBO analysis to investigate the stability of the molecule as a function of both hyper-conjugative interactions, charge transfer within the molecule and charge delocalization, and Mulliken atomic charge structure were examined using the Gaussian 09 software, and the results were displayed. In this study, ADME analysis was performed to analyze the problem of our molecule finding application in the field, focusing on producing effective and harmless pharmacological drugs. Finally, molecular docking analysis of the examined compound on melanoma cancer were performed with two different enzymes (PDB:3OG7) and (PDB:5EG3), and docking scores and receptor models were given.

Anahtar Kelimeler

Kaynakça

  1. Arivazhagan, M., Manivel, S., Jeyavijayan, S., & Meenakshi, R. (2015). Vibrational spectroscopic (FTIR and FT-Raman), first-order hyperpolarizablity, HOMO, LUMO, NBO, Mulliken charge analyses of 2-ethylimidazole based on Hartree–Fock and DFT calculations. Spectrochim Acta A Mol Biomol Spectrosc, 134, 493-501.
  2. Bağlan, M., Gören, K., & Yıldıko, Ü. (2023). HOMO–LUMO, NBO, NLO, MEP analysis and molecular docking using DFT calculations in DFPA molecule. Int. J. Chem. Technol, 7(1), 38-47.
  3. Bhavani, R., Kanagathara, N., Marchewka, M. K., Janczak, J., Senthilkumar, K., & Azam, M. (2024). Single crystal analysis and DFT studies of the novel hybrid material-based on 2-hydroxypyridine and selenic acid. Results in Chemistry, 7, 101239.
  4. Bouachrıne, M., Azaıd, A., Abram, T., Kacimi, R., Raftanı, M., Sbai, A., & Lakhlıfı, T. (2021). DFT/TDDFT studies of the structural, electronic, NBO and non-linear optical proper-ties of triphenylamine functionalized tetrathiafulvalene. J. Turkish chem. soc, 5(2), 24-34.
  5. Cetin, A., Toptas, M., & Türkan, F. (2022). Synthesis, biological evaluation, and bioinformatics analysis of indole analogs on AChE and GST activities. Med. Chem. Res., 31(12), 2119-2131.
  6. Demir, P., & Akman, F. (2017). Molecular structure, spectroscopic characterization, HOMO and LUMO analysis of PU and PCL grafted onto PEMA-co-PHEMA with DFT quantum chemical calculations. J. Mol. Struct., 1134, 404-415.
  7. Elangovan, N., & Sowrirajan, S. (2021). Synthesis, single crystal (XRD), Hirshfeld surface analysis, computational study (DFT) and molecular docking studies of (E)-4-((2-hydroxy-3,5-diiodobenzylidene)amino)-N-(pyrimidine)-2-yl) benzenesulfonamide. Heliyon, 7(8), e07724.
  8. Guo, H. (2019). Isatin derivatives and their anti-bacterial activities. Eur. J. Med, 164, 678-688.

Ayrıntılar

Birincil Dil

İngilizce

Konular

Hesaplamalı Kimya

Bölüm

Araştırma Makalesi

Erken Görünüm Tarihi

27 Ağustos 2024

Yayımlanma Tarihi

1 Eylül 2024

Gönderilme Tarihi

12 Nisan 2024

Kabul Tarihi

18 Temmuz 2024

Yayımlandığı Sayı

Yıl 2024 Cilt: 14 Sayı: 3

Kaynak Göster

APA
Gören, K., Bağlan, M., & Yıldıko, Ü. (2024). Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule. Journal of the Institute of Science and Technology, 14(3), 1186-1199. https://doi.org/10.21597/jist.1467666
AMA
1.Gören K, Bağlan M, Yıldıko Ü. Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule. Iğdır Üniv. Fen Bil Enst. Der. 2024;14(3):1186-1199. doi:10.21597/jist.1467666
Chicago
Gören, Kenan, Mehmet Bağlan, ve Ümit Yıldıko. 2024. “Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule”. Journal of the Institute of Science and Technology 14 (3): 1186-99. https://doi.org/10.21597/jist.1467666.
EndNote
Gören K, Bağlan M, Yıldıko Ü (01 Eylül 2024) Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule. Journal of the Institute of Science and Technology 14 3 1186–1199.
IEEE
[1]K. Gören, M. Bağlan, ve Ü. Yıldıko, “Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule”, Iğdır Üniv. Fen Bil Enst. Der., c. 14, sy 3, ss. 1186–1199, Eyl. 2024, doi: 10.21597/jist.1467666.
ISNAD
Gören, Kenan - Bağlan, Mehmet - Yıldıko, Ümit. “Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule”. Journal of the Institute of Science and Technology 14/3 (01 Eylül 2024): 1186-1199. https://doi.org/10.21597/jist.1467666.
JAMA
1.Gören K, Bağlan M, Yıldıko Ü. Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule. Iğdır Üniv. Fen Bil Enst. Der. 2024;14:1186–1199.
MLA
Gören, Kenan, vd. “Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule”. Journal of the Institute of Science and Technology, c. 14, sy 3, Eylül 2024, ss. 1186-99, doi:10.21597/jist.1467666.
Vancouver
1.Kenan Gören, Mehmet Bağlan, Ümit Yıldıko. Melanoma Cancer Evaluation with ADME and Molecular Docking Analysis, DFT Calculations of (E)-methyl 3-(1-(4-methoxybenzyl)-2,3-dioxoindolin-5-yl)-acrylate Molecule. Iğdır Üniv. Fen Bil Enst. Der. 01 Eylül 2024;14(3):1186-99. doi:10.21597/jist.1467666

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