EN
TR
Exploration of ITS region as DNA barcode for Kakothrips priesneri Pelikan phylogeny
Abstract
The Thripidae family is a diverse group of insects with global distribution and significant economic importance as pests of agricultural crops. Accurate identification and classification of Thripidae species are critical for their effective management and control. To aid in this effort, DNA barcoding using the ITS gene region has proven to be an efficient and reliable tool for identifying and differentiating Thripidae species. The high variability rate of the ITS region makes it particularly effective for identifying and classifying closely related species, providing valuable insight for understanding and preserving the taxonomic diversity of the Thripidae family. The present study aims to explore the effectiveness of the ITS gene region for DNA barcoding of Kakothrips priesneri Pelikan species. For the first time, the ITS data obtained from this study showed the placement of Kakothrips priesneri in both common methods, using DNA barcoding (BLAST and MEGA), produced positive results for the ITS analysis, indicating that the region may be suitable for the Kakothrips species.
Keywords
Thanks
This study was orally presented at the IMPPC (2nd International Molecular Plant Protection Congress) conference held on May 15-18, 2023. Furthermore, the abstract has been published in the congress book.
References
- Almási A, Tóbiás I, Bujdos L, Jenser G (2016) Molecular characterisation of Thrips tabaci Lindeman, 1889 (Thysanoptera: Thripidae) populations in Hungary based on the ITS2 sequences. Acta Zoologica Academiae Scientiarum Hungaricae 62(2): 157-164. doi: 10.17109/AZH.62.2.157.2016.
- Ashfaq M, Hebert PD (2016) DNA barcodes for bio-surveillance: regulated and economically important arthropod plant pests. Genome 59(11): 933-945. doi: 10.1139/gen-2016-0024.
- Berzosa J (1994). Two new species of Kakothrips Williams 1914 (Insecta: Thysanoptera: Thripidae). Senckenbergiana biologica 73(1-2): 77-82.
- Darling JA, Blum MJ (2007) DNA-based methods for monitoring invasive species: a review and prospectus. Biological Invasions 9(7): 751-765. doi: 10.1007/s10530-006-9079-4.
- Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. 19(1): 11-15.
- Gauld ID, Mound LA (1982) Homoplasy and the delineation of holophyletic genera in some insect groups. Systematic Entomology 7(1): 73-86. doi: 10.1111/j.1365-3113.1982.tb00127.x.
- Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of molecular evolution 16(2): 111-120. doi: 10.1007/BF01731581.
- Kumar S, Stecher G, Tamura K (2016) MEGA 11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution 33(7): 1870-1874. doi: 10.1093/molbev/msw054.
Details
Primary Language
English
Subjects
Entomology in Agriculture
Journal Section
Research Article
Authors
Publication Date
December 4, 2023
Submission Date
August 16, 2023
Acceptance Date
November 7, 2023
Published in Issue
Year 2023 Volume: 36 Number: 3
APA
Şahin Negiş, İ. (2023). Exploration of ITS region as DNA barcode for Kakothrips priesneri Pelikan phylogeny. Mediterranean Agricultural Sciences, 36(3), 123-127. https://doi.org/10.29136/mediterranean.1344488
AMA
1.Şahin Negiş İ. Exploration of ITS region as DNA barcode for Kakothrips priesneri Pelikan phylogeny. Mediterranean Agricultural Sciences. 2023;36(3):123-127. doi:10.29136/mediterranean.1344488
Chicago
Şahin Negiş, İnci. 2023. “Exploration of ITS Region As DNA Barcode for Kakothrips Priesneri Pelikan Phylogeny”. Mediterranean Agricultural Sciences 36 (3): 123-27. https://doi.org/10.29136/mediterranean.1344488.
EndNote
Şahin Negiş İ (December 1, 2023) Exploration of ITS region as DNA barcode for Kakothrips priesneri Pelikan phylogeny. Mediterranean Agricultural Sciences 36 3 123–127.
IEEE
[1]İ. Şahin Negiş, “Exploration of ITS region as DNA barcode for Kakothrips priesneri Pelikan phylogeny”, Mediterranean Agricultural Sciences, vol. 36, no. 3, pp. 123–127, Dec. 2023, doi: 10.29136/mediterranean.1344488.
ISNAD
Şahin Negiş, İnci. “Exploration of ITS Region As DNA Barcode for Kakothrips Priesneri Pelikan Phylogeny”. Mediterranean Agricultural Sciences 36/3 (December 1, 2023): 123-127. https://doi.org/10.29136/mediterranean.1344488.
JAMA
1.Şahin Negiş İ. Exploration of ITS region as DNA barcode for Kakothrips priesneri Pelikan phylogeny. Mediterranean Agricultural Sciences. 2023;36:123–127.
MLA
Şahin Negiş, İnci. “Exploration of ITS Region As DNA Barcode for Kakothrips Priesneri Pelikan Phylogeny”. Mediterranean Agricultural Sciences, vol. 36, no. 3, Dec. 2023, pp. 123-7, doi:10.29136/mediterranean.1344488.
Vancouver
1.İnci Şahin Negiş. Exploration of ITS region as DNA barcode for Kakothrips priesneri Pelikan phylogeny. Mediterranean Agricultural Sciences. 2023 Dec. 1;36(3):123-7. doi:10.29136/mediterranean.1344488
