Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia

Sergey Shepelev; Inna Pototskaya; Alexey Morgounov; Alexandr Chursin; Svetlana Esse; Mikhail Koshkin; Vladimir P. Shamanin

Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia

Abstract

Landraces of wheat represent valuable genetic resources for enhancing the grain quality of modern wheat varieties. In this study, a panel comprising 94 landraces sourced from the VIR collection (Russia) and 142 wheat varieties from breeding programs of Russia and Kazakhstan was subjected to genome-wide association study (GWAS) to pinpoint genomic regions and identify candidate genes associated with grain quality traits in wheat breeding. Genotyping of the germplasm panel was conducted using the Affymetrix 25K platform, while phenotypic data for agronomic traits were collected over two growing seasons (2022 and 2023) in Western Siberia. Investigation of the genotypic structure revealed seven distinct clusters within the landraces and breeding varieties population, indicating a clear genetic differentiation among the landraces. Notably, the В genome of the landrace germplasm exhibited the highest proportion of SNP markers (41%). Based on experiment data among 294 MTAs seven unique loci were identified with a −log10(p) value >6 in the landrace collection that had significant associations with grain protein content, grain gluten, strong gluten content, gluten index, and vitreousness (AX-158572632, wsnp_Ex_c10084_16572374, BobWhite_c31129_60, AX-158586137, AX-94949506, BobWhite_c46257_130, wsnp_JG_c5646_2148382). These markers were distributed on chromosomes A, 2B, 5B, 6B, and 6D with ranged of phenotypic variation 9–26%.

Keywords

Thanks

Field experiments were carried out with the support of the Russian Science Foundation (agreement No. 22-16-20008 dated March 23, 2022).

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Details

Primary Language

English

Subjects

Crop and Pasture Breeding

Journal Section

Research Article

Authors

Sergey Shepelev This is me
0000-0002-4282-8725
Russian Federation

Inna Pototskaya ^*
0000-0003-3574-2875
Russian Federation

Alexey Morgounov This is me
0000-0001-7082-5655
Kazakhstan

Alexandr Chursin This is me
0000-0001-6797-6145
Russian Federation

Svetlana Esse This is me
0000-0001-9880-5904
Russian Federation

Mikhail Koshkin This is me
0000-0002-0034-7448
Russian Federation

Vladimir P. Shamanin
0000-0003-4767-9957
Russian Federation

Publication Date

June 23, 2025

Submission Date

October 1, 2024

Acceptance Date

February 20, 2025

Published in Issue

Year 2025 Volume: 30 Number: 1

IZ

https://izlik.org/JA68NM26AF

Cite

RIS / Bibtex

APA

Shepelev, S., Pototskaya, I., Morgounov, A., Chursin, A., Esse, S., Koshkin, M., & Shamanin, V. P. (2025). Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia. Turkish Journal Of Field Crops, 30(1), 10-21. https://izlik.org/JA68NM26AF

AMA

1.Shepelev S, Pototskaya I, Morgounov A, et al. Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia. TJFC. 2025;30(1):10-21. https://izlik.org/JA68NM26AF

Chicago

Shepelev, Sergey, Inna Pototskaya, Alexey Morgounov, et al. 2025. “Identifying Loci Associated With Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia”. Turkish Journal Of Field Crops 30 (1): 10-21. https://izlik.org/JA68NM26AF.

EndNote

Shepelev S, Pototskaya I, Morgounov A, Chursin A, Esse S, Koshkin M, Shamanin VP (June 1, 2025) Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia. Turkish Journal Of Field Crops 30 1 10–21.

IEEE

[1]S. Shepelev et al., “Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia”, TJFC, vol. 30, no. 1, pp. 10–21, June 2025, [Online]. Available: https://izlik.org/JA68NM26AF

ISNAD

Shepelev, Sergey - Pototskaya, Inna - Morgounov, Alexey - Chursin, Alexandr - Esse, Svetlana - Koshkin, Mikhail - Shamanin, Vladimir P. “Identifying Loci Associated With Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia”. Turkish Journal Of Field Crops 30/1 (June 1, 2025): 10-21. https://izlik.org/JA68NM26AF.

JAMA

1.Shepelev S, Pototskaya I, Morgounov A, Chursin A, Esse S, Koshkin M, Shamanin VP. Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia. TJFC. 2025;30:10–21.

MLA

Shepelev, Sergey, et al. “Identifying Loci Associated With Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia”. Turkish Journal Of Field Crops, vol. 30, no. 1, June 2025, pp. 10-21, https://izlik.org/JA68NM26AF.

Vancouver

1.Sergey Shepelev, Inna Pototskaya, Alexey Morgounov, Alexandr Chursin, Svetlana Esse, Mikhail Koshkin, Vladimir P. Shamanin. Identifying Loci Associated with Grain Quality Traits of Landraces and Modern Varieties of Spring Bread Wheat under Conditions of Western Siberia. TJFC [Internet]. 2025 Jun. 1;30(1):10-21. Available from: https://izlik.org/JA68NM26AF