Optical Bio-barcode Nanobiosensors

Year 2019, , 383 - 395, 31.01.2019

Fikret Yalçınkaya , Abdulhamid Hamsho

https://doi.org/10.29137/umagd.503309

Abstract

Nanobiosensors are at the core of multidisciplinary research worldwide, from textiles to medicine, from space research to marine. The field of optical nanobiosensors has a special importance within this growing area over the last quarter of the century. Various forms of optical detection methods have been used in a wide spectrum of applications. Practical applications are intentionally given to help clinicians and laboratory employees in terms of materials, compositions, and protocols of use. This tutorial review includes recent efforts in the use of nanoparticle-based bio-barcode analysis to detect a target molecule by focusing on optical techniques. The optical sensing part defines fluorescence, real-time PCR, colorimetric, luminescence, surface plasmon and electrophoresis resonance systems. Finally, applications have been summarized in the detection of pathogenic microorganisms, clinical analysis, pesticides and toxicants in the environmental area and in food products.

Keywords

Optic, Biobarcode, nanobiosensor

References

• Amini B., Kamali M., Salouti M., Yaghmaei P., (2016), Fluorescence bio-barcode DNA assay based on gold and magnetic nanoparticles for detection of Exotoxin A gene sequence., Doi: j.bios.2016.10.030
• An j.H., Oh B.K., Choi J.W., (2013), Detection of Tyrosine Hydroxylase in Dopaminergic Neuron Cell Using Gold Nanoparticles-Based Barcode DNA, DOI: 10.1166/jbn.2013.1525
• Bao Y.P., Wei T.F., Lefebvre P.A., An H., He L., Kunkel G.T., Muller U.R., (2006), Detection of Protein Analytes via Nanoparticle-Based Bio Bar Code Technology, DOI: 10.1021/ac051798d
• Bhushan B., (2010), springer handbook of nanotechnology (1-11) (3rd Edition). Springer Heidelberg Dordrecht London New York. DOI 10.1007/978-3-642-02525-9
• Broto M., Galve R., Marco M.P., (2017), Sandwich NP-based biobarcode assay for quantification C-reactive protein in plasma samples, DOI: 10.1016/j.aca.2017.09.007
• Chen L., Wei H., Guo Y., Cui Z., Zhang Z., Zhang X.E., (2009), Gold nanoparticle enhanced immuno-PCR for ultrasensitive detection of Hantaan virus nucleocapsid protein, DOI: 10.1016/j.jim.2009.05.007
• Dong H., Liu J., Zhu H., Ou C.Y., Xing W., Qiu M., Zhang G., Xiao Y., Yao J., Pan P., Jiang Y., (2012), Two types of nanoparticle-based bio-barcode amplification assays to detect HIV-1 p24 antigen, DOI: 10.1186/1743-422X-9-180
• Dong H., Meng X., Dai W., Cao Y., Lu H., Zhou S., Zhang X., (2015), Highly Sensitive and Selective MicroRNA Detection Based on DNABio- Bar-Code and Enzyme-Assisted Strand Cycle Exponential Signal Amplification, DOI: 10.1021/acs.analchem.5b00029
• Du P., Jin M., Chen G., Zhang C., Jiang Z., Zhang Y., Zou P., She Y., Jin F., Shao H., Wang S., Zheng L., Wang J., (2016), A Competitive Bio-Barcode Amplification Immunoassay for Small Molecules Based on Nanoparticles, DOI: 10.1038/srep38114
• Du P., Jin M., Zhang C., Chen G., Cui x., Zhang Y., Zhang Y., Zou P., Jiang Z., Cao X., She Y., Jin F., Wang J., (2017), Highly sensitive detection of triazophos pesticide using a novelbio-bar-code amplification competitive immunoassay in a micro wellplate-based platform, DOI: 10.1016/j.snb.2017.10.075
• H.D. Hill, C.A. Mirkin, (2006), The bio-barcode assay for the detection of protein and nucleic acid targets using DTT-induced ligand exchange, Nat. Protoc. 1 324e336.
• Hansen, J.A., Mukhopadhyay, R., Hansen, J.O., Gothelf, K.V., 2006a. J. Am. Chem. Soc. 128, 3860–3861.12
• Hansen, J.A.,Wang, J., Kawde, A.-N., Xiang, Y., Gothelf, K.V., Collins, G., 2006b., Quantum-Dot/Aptamer-Based Ultrasensitive Multi-Analyte Electrochemical Biosensor, J. Am. Chem. Soc. 128, 2228–2229.
• Jie, G., Liu, B., Pan, H., Zhu, J.J., Chen, H.Y., 2007, CdS Nanocrystal-Based Electrochemiluminescence Biosensor for the Detection of Low-Density Lipoprotein by Increasing Sensitivity with Gold Nanoparticle Amplification, Anal. Chem. 79, 5574–5581.
• Lee H., Park J.E., Nam J.M., (2013), Bio-barcode gel assay for microRNA, DOI: 10.1038/ncomms4367
• Loo J.F.C., Yang C., Tsang H.L., Lau P.M., Yong K.T., Ho H.P., Kong S.K., (2017), An Aptamer Bio-barCode (ABC) assay using SPR, RNase H, and probes with RNA and gold-nanorods for anti-cancer drug screening, DOI: 10.1039/c7an01026e
• Nam J.M. Jang K.J. Groves J.T., (2007), Detection of proteins using a colorimetric bio-barcode assay, DOI: 10.1038/nprot.2007.201
• Nam J.M., Thaxton C.S., Mirkin C.A. (2003), Nanoparticles-based bio-barcodes for the ultrasensitive detection of proteins, DOI: 10.1126/science.1088755
• Nam J.M., Wise A.R., Groves J.T., (2005), Colorimetric Bio-Barcode Amplification Assay for Cytokines, DOI: 10.1021/ac0513764
• S.I. Stoeva, J.S. Lee, C.S. Thaxton, C.A. Mirkin, Multiplexed DNA detection with biobarcoded nanoparticle probes, Angew. Chem. Int. Ed. Engl. 45 (2006) 3303e3306.
• Trévisan M., Schawaller M., Quapil G., Souteyrand E., Mérieux Y., 2010, Evanescent wave fluorescence biosensor combined with DNA bio-barcode assay for platelet genotyping, DOI: 10.1016/j.bios.2010.08.038
• Yang G., Zhuang H., Chen H., Ping X., Bu D., (2015), A gold nanoparticle based immunosorbent bio-barcode assaycombined with real-time immuno-PCR for the detection ofpolychlorinated biphenyls, DOI: 10.1016/j.snb.2015.02.128
• Yang G.X., Zhuang H.S., Chen H.Y., Ping X.Y., Bu D., (2013), A sensitive immunosorbent bio-barcode assay based on real-time immuno-PCR for detecting 3,4,3',4'-tetrachlorobiphenyl, DOI: 10.1007/s00216-013-7583-9
• Zhang C., Du P., Jiang Z., Jin M., Chaen g., Cao X., Cui X., Zhang Y., Li R., Abd El-aty A.M., Wang J. (2017), A simple and sensitive competitive bio-barcode immunoassay for triazophos based on multi-modified gold nanoparticles and fluorescent signal amplification, Doi: J.ACA.2017.10.032.
• Zhou W.H., Zhu C.L., Lu C.H., Guo X., Chen F., Yang H.H., Wang X., (2009), Amplified detection of protein cancer biomarkers using DNAzyme functionalized nanoprobesw, DOI: 10.1039/b916217h
• Zhou Z., Li T., Huang H., Chen Y., Liu F., Huang C., Li N., (2014), A dual amplification strategy for DNA detection combining bio-barcode assay and metal-enhanced fluorescence modality, Doi: 10.1039/c4cc05554c
• Zhu, N. N., Zhang, A. P., Wang, Q. J., He, P. G. and Fang, Y. Z. 2004b. Electrochemical detection of DNA hybridization using methylene blue and electro‐deposited zirconia thin films on gold electrodes. Anal. Chim. Acta, 510: 163–168