Genetik Karakterizasyonda Mitokondriyal DNA Kullanımı

Year 2007, Volume: 38 Issue: 1, 105 - 111, 10.01.2011

Memiş Özdemir Ünsal Doğru

Abstract

Artan dünya nüfusuna bağlı olarak nicelik ve nitelik bakımından besin maddelerine olan talebin giderek artması, yeterli ve
dengeli beslenmenin sağlanmasında çiftlik hayvanlarının önemini daha da artırmakta ve birden fazla verim yönünde
geliştirilmelerini zorunlu kılmaktadır. Hayvanvancılıkta, ekonomik önemi olan karakterler üzerinde yapılan seleksiyon ile ırkın
sahip olduğu genetik varyasyon daralmakta, bu durum ise populasyonda genotipik ilerlemeyi zorlaştırmaktadır. Ayrıca, yerli
ırkların yetiştirildiği bölgelerde üretimi artırmak amacıyla genetik olarak üstün hayvan ırklarının doğrudan yada dolaylı olarak
devreye sokulması, potansiyel önemi olan yerli gen kaynaklarının kaybolma riskini artırmaktadır. Gen kaynaklarının ileride
kullanım durumları için korunmaları gerektiğinden, özgün genetik yapılarının belirlenmesi önem arzetmektedir. Son zamanlarda
genetik varyasyonun belirlenmesi, filogenetik analiz, seleksiyon ve gıdaların orjinlerinin tespiti gibi çeşitli alanlarda kendine özgü
bir çok özelliğe sahip ve moleküler düzeyde tanımlamaya imkan sağlayan mitokondriyal DNA (mtDNA) gibi kalıtım
faktörlerinden geniş biçimde faydalanılmaktadır.

Keywords

Mitokondriyal DNA, Filogeni, Genetik çeşitlilik, Çiftlik hayvanları

References

• Anderson, S., De Bruijn, M.H., Coulson, A.R., Eperon, I.C., Sanger, F., Young, I.G., 1982. Complete sequence of bovine mitochondrial DNA, conserved features of the mammalian mitochondrial genome. J. Mol. Biol. (156):683-717. Anonim, (2005). (Online) Erişim:
• http://www.medicine.ankara.edu.tr/internal_medical
• /pediatrics/mol-gen/index. php?PgId=73.
• Avise, J.C., 1991. Ten unorthodox perspectives on evolution promted by comparative population genetic findings on mitochondrial DNA. Annual Rev. Genetic. (25):45-69.
• Bell, B.R., McDaniel, B.T., Robinson, O.V., 1985. Effects of cytoplasmic inheritance on production traits in dairy cattle. J. Dairy Sci. (68):2038-2051.
• Benedictis, G.D., rose, G., Carrieri, G., De Luca, M., Falcone, E., Passarino, G., Bonafe, M., Monti, D., Baggio, G., Bertoloni, S., mari, D., Mattace, R., Franceschi, C., 1999. Mitochondrial DNA inherited variants are associated with succesful aging and longevity in humans. The FASEB Journal. (13):1532- 1536.
• Bishop, M.D., Hawkins, G.A.,, Keener, C.L., 1995. Use of DNA markers in animal selection. Theriogenology, (43):61.
• Boettcher, P.J., Stevering, D.W.B., Beitz, D.C., Freeman, A.E., McDaniel, B.T. 1996. Multiple herd evaluation of the effects of material lineage on yield traits of Holstein cattle. J. Dairy Sci. (79):655.
• Bogenhagen D. F., 1999. Repair of mtDNA in vertebrates. Am.J.Hum.Genet. 64: 1276-1281.
• Brown, W.M., George, M.JR, Wilson, A.C., 1979. Rapid evolution of animal mitochondrial DNA. Proc. Natl. Acad. Sci.USA (76):1967-71.
• Brown, W.M., Koehler, C.M., Lindberg, G.L., Freeman, A.E., Mayfield, J.E., Myers, A.M., Scutz, M.M., Beitz, D.C., 1989. Molecular analysis of cytoplasmic genetic variation in Holstein cows. J. Anim. Sci. (67): 1926-32.
• Bruford, M. W., Bradley, D.G., Luikart, G. 2003. DNA Markers Reveal The Complexity of Livestock Domestication. Nature Review Genetics (4): 900-910.
• Cann, R. L., Stoneking, M., Wilson, A.C., 1987. Mitochondrial DNA and human evolution. Nature, (325):31-36.
• Carvajal-Carmona, L.G., Bermudez, N., Olivera-Angel, M., Estrada, L., Ossa, J., Bedoya, G., Ruiz-Linares, Andres., 2003. Abundant mtDNA diversity and ancestral admixture in colombian Criollo cattle (Bos taurus). Genetics, (165):1457- 1463.
• Chen, H., Leibenguth, F., 1995. Restriction endonuclease analysis of mitochondrial DNA of three farm animal species: cattle, sheep and goat. Comp. Biochem. Physiol. Vol. 111B, (4): 643-649.
• Clop, A., Amills, M., Noguera, JL., Fernandez, A., Capote, J., Ramon, M.M., Kelly, L., Kijas, J.M.H., Andersson, L., Sanchez, A., 2004. Estimating the frequency of Asian cytochrome B haplotypes in standard European and local Spanish pig breeds. Genetics Selection Evolution, 36 (1): 97- 104.
• Cummins, J., 1998. Mitochondrial DNA in mammalian reproduction. Reviews of Reproduction, (3):172-182.
• Cunningham, P., 2003. Gene based tecnologies for the livestock industries in the third millennium. International Symposium on Applications of Gene-based Technologies for Improving Animal Production and Health in Developing Countries, 6-10 October 2003, Vienna.
• Danan, C., Sternberg, D., Van-Steirteghem, A., Cazaneuve, C., Duguesnoy, P., Besmond, C., Gossens, M., Lissens, W., Amselem, S., 1999. Evaluation of paternal mitochondrial inheritance in neonates born after intracytoplasmic sperm injection. American J. Human Genet. (65):463-473.
• Edwards, M.D., Page, N.J., 1994. Evaluation of marker-assisted selection through computer simulation. Theor. Appl. Genet. 88:376.
• Fajardo, V., Gonzalez, I., Lopez-Calleja, I., Martin, I., Hernandez, P.E., Garcia, T., Martin, R., 2006. PCR-RFLP authentication of meats from red deer (Cervus elaphus), fallow deer (Dama dama), roe deer (Capreolus capreolus), cattle (Bos taurus), sheep (Ovis aries), and goat (Capra hircus). Journal of Agricultural and Food Chemistry, 54(4):1144-1150.
• Freeman, A.E., 1995. Overview of Dairy Cattle Breeding. (Online) Erişim: www.extension.iastate.edu/pages/dairy/reports95/breeding/ds l-22.pdf (2003)
• Gao, H.W., Xu, BL., Liang, C.Z., Zhang, Y.B., Zhu, L.H., 2004. Polymerase chain reaction method to detect canis materials by amplification of species-specific DNA fragment. Journal of Aoac International, 87 (5): 1195-1199.
• Ge, W., Davis, M.E., Hines, H.C., Irvin, K.M., 2002. Identification of genetic markers for growth and carcass traits in beef cattle. The Ohio State University Department of Anim. Sci. (Online) Erişim:http://ohioline.osu.edu/sc170/sc170_5.html. (2004).
• Hanford, K.J., Snowder, G.D., Van-Vleck, L.D., 2003. Models with nuclear, cytoplasmic, and for a production traits of Colombia sheep. J. Anim. Sci. (81):1926-1932.
• Hecht, W., 1990. Studies on mitochondrial DNAin farm animals. In genome Analysis in Domestic Animals, 259-268.
• Herman, L. 2001., Determination of the animal origin of raw food by species-specific PCR. Journal of Dairy Research, 68 (3): 429-436.
• Hiendleder, S. Lewalski, H., Wassmuth, R. and Janke, A., 1998. The complete mitochondrial DNA sequence of the domestic sheep (Ovis aries) and comparison with the other major ovine haplotype. Journal of Molecular Evolution. 47(4): 441-8.
• Hiendleder, S., Kaupe, B., Wassmuthic, R., Janke, A. 2002. Molecular analysis of wild and domestic sheep are derived from two ancestral maternal sources:no evidence for contributions from urial and argali sheep. Journal of Heredity. 89: 113-120.
• Huizinga, H.A., Korver, S., McDaniel, B.T., Politiek, R. 1986. Material effects due to cytoplasmic inheritance in dairy cattle. Influence on milk production and reproductive traits. Livest. Prod. Sci.(15):11.
• Kaneda, H., Hayashi, J.I., Takahama, S., Taya, C., Lindahl, K.F., Yonekawa, H., 1995. Elimination of paternal mitochondrial DNA in intraspecific crosses during early mouse embryogenesis. Proc. Natl. Acad. Sci. USA (92):4542–4546.
• Kashi, Y., Hallerman, E., Soller, M., 1990. Marker-asisted selection of candidate bulls for progeny testing program. Anim. Prod. (51):63.
• Lightowlers, R.N., Chinnery, P.F., Turnbell, D.M., Howell, N., 1997. Mammalian mitochondrial genetics: heredity, heteroplasmy and disease. TIG (13): 450-455.
• Liu, Y.P., Wu, G.S., Yao, Y.G., Miao, Y.W., Luikart, G., Baig, M., Beja-Pereira, A., Ding, Z.L., Palanichamy, M.G., Zhang, Y.P. 2006. Multiple maternal origins of chickens: Out of the Asian jungles. Molecular Phylogenetics and Evolution, 38 (1): 12-19.
• Loftus, R. T., Ertugrul, O., Harba, A. H., El-Barody, M. A. A., Machugh, D. E., Park, S. D. E., Bradley, D. G., 1999. A microsatellite survey of cattle from a centre of origin: the Near East. Molecular Ecology (8): 2015–2022.
• Loftus, R.T., Machugh, D.E., Bradley, D.G., Sharp, P.M., Cunningham, P., 1994. Evidence for Two Independent Domestications of cattle. Proc. Natl. Acad. Sci. USA (91):2557-2761.
• Lopez-Calleja, I., Gonzalez, I., Fajardo, V., Rodriguez, M.A., Hernandez, P.E., Garcia, T., Martin, R. 2004. Rapid detection of cows' milk in sheeps' and goats' milk by a species-specific polymerase chain reaction technique. Journal of Dairy Sci. 87 (9): 2839-2845.
• Luikart, G., Gielly, L., Excoffier, L., Vigne, J.D., Bouvet, J., Taberlet, P., 2001. Multiple maternal origins and weak phylogeographic structure in domestic goats. PNAS Vol. 98 (10) 5929. Erişim:www.pnas.org/cgi/doi/10.1073/pnas. 091591198 (2004) (Online)
• MacHugh, D.E., Shriver, M.D., Loftus, R.T., Cunningham, P., Bradley, D.G. 1997. Microsatellite DNA variation and the evolution, domestication and phylogeography of taurin and zebu cattle (Bos taurus and Bos Indicus). Genetics (146): 1076-1086.
• Manfredi, G., Thyagarajan, D., Papadopoulou, L.C., Pallotti, F., Schon, E.A., 1997. The fate of human sperm-derived mtDNA in somatic cells. Am. J. Hum. Genet. (61):953-960.
• Maniatis, N., Pollott, G. E., 2002. Nuclear, cytoplasmic, and environmental effects on growth, fat, and muscle traits in Suffolk lambs from a sire referencing scheme. J. Anim. Sci. (80):57–67.
• Mannen, H., Morimoto, M., Oyama, K., Mukai, F., Tsuji, S., 2003. Identification of mitochondrial DNA substitions related to meat quality in Japanese Black cattle. J. Anim. Sci. (81):68- 73.
• Mannen, H., Tsuji, S., Loftus, R.T., Bradley, D.G., 1998. Mitochondrial DNA variation and evolution of Japanese Black cattle. Genetics (150):1169-1175.
• Meghen, C., Machugh, D.E., Bradley, D.G., 2002. Genetic characterization and West African cattle. (Online) Erişim:www.fao.org/docrep/t1300t/genetic%20characterizati on (2004).
• Meyer, R., Hoffelein, C., Candrian, U., 1995. Polymerase chain reaction restriction fragment length polymorphism analysis: A simple method for species identification in food. Journal of Aoac International, 78 (6): 1542-1551.
• Mirol, P.M., Giovambattista, G., Liron, J.P., Dulout, F.N., 2003. African and European mitochondrial haplotypes in South American Creole cattle. Heredity (91):248-254.
• Montiel-Sosa, J.F., Ruiz-Pesini, E., Montoya, J., Roncales, P., Lopez-Perez, M.J., Perez-Martos, A., 2000. Direct and highly species-specific detection of pork meat and fat in meat products by PCR amplification of mitochondrial DNA. Journal of Agricultural And Food Chemistry, 48 (7): 2829- 2832.
• Nishibori, M., Hayashi, T., Tsudzuki, M., Yamamoto, Y., Yasue, H., 2001. Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Anim. Genet. 32 (6): 380-385.
• Özdemir M. 2006. Türkiye Yerli Sığır Irklarında Mitokondriyal DNA Polimorfik Yapılarının PCR-RFLP ve DNA Dizi Analizi Yöntemleri ile İncelenmesi Doktora Tezi. Atatürk Üniversitesi, Fen Bilimleri Enstitüsü. Erzurum.
• Öztaş, S. ve Yakan, B., 2000. Mitokondriyon ve Mitokondriyal DNA Patolojileri. Atatürk Üniversitesi Kazım Karabekir Eğitim Fakültesi Ofset tesisleri, 1-75. Erzurum.
• Park, H.B., Jacobsson, L., Wahlberg, P., Siegel, P.B., Andersson, L., 2006. QTL analysis of body composition and metabolic traits in an intercross between chicken lines divergently selected for growth. Physiological Genomics, 25 (2): 216- 223.
• Peter, C., Brunen-Nieweler, C., Cammann, K., Borchers, T., 2004. Differentiation of animal species in food by oligonucleotide microarray hybridization. European Food Research and Technology, 219 (3): 286-293.
• Pfeiffer, I., Voelkel, I., Breing, B., 2005. Phylogenetics of the European Dahomey miniature cattle based on mitochondrial D-loop region DNA sequence. International Society for Animal genetics, Anim. Genet. (36):179-181.
• Poulton, J., Macaulay V., Marchington D.R., 1998. Is the bottleneck cracked? Am. J. Hum. Genet. (62):752-757.
• Rajapaksha, W.S., Thilakaratne, I.P., Chandrasiri, A.N., Niroshan, T.D., 2003. Development of PCR assay for identification of buffalo meat Asıan-Australasıan J. Anim. Sci. 16(7): 1046- 1048.
• Richter, C., 1988. Do mitochondrial DNA fragments promote cancer and aging? FEBS lett 241:1-5.
• Rodriguez, M.A., Garcia, T., Gonzalez, I., Asensio, L., Hernandez, P.E., Martin, R., 2004. PCR identification of beef, sheep, goat, and pork in raw and heat-treated meat mixtures. Journal of Food Protection, 67 (1): 172-177.
• Rodriguez, M.A., Garcia, T., Gonzalez, I., Asensio, L., Mayoral, B., Lopez-Calleja, I., Hernandez, P.E., Martin, R., 2003. Identification of goose, mule duck, chicken, turkey, and swine in foie gras by species-specific polymerase chain reaction. Journal Of Agricultural and Food Chemistry, 51 (6): 1524-1529.
• Rokas, A., Ladoukakis, E., Zouros, E., 2003. Animal mitochondrial recombination revisited. TRENDS in Ecology and Evolution, 18(8):411-417.
• Saara, F., 1999. Phylogenetic analysis of mitochondrial DNA: Detection of mutations in patients with occipital stroke. Oulu University Library, Finland.
• Schutz, M.M., Freeman, A.E., Beitz, D.C., Mayfield, J.E., 1992. The importance of maternal lineages on milk yield traits of dairy cattle. J. Dairy Sci. (75):1331-1341.
• Schutz, M.M., Freeman, A.E., Lindberg, G.L., Beitz, D.C., 1993. Effects of maternal lineages grouped by mitochondrial genotypes on milk yield and composition. J. Dairy Sci. (76): 621-9.
• Schutz, M.M., Freeman, A.E., Lindberg, G.L.,Koehler, C.M., Beitz, D.C., 1994. The effect of mitochondrial DNA on milk production and healt of dairy cattle. Livest. Prod. Sci. (37):283-95.
• Shen, X.J., Ito, S., Mizutani, M., Yamamoto, Y., 2002. Phylogenetic analysis in chicken breeds inferred from complete cytochrome b gene information. Biochem.Genet. 40 (3-4):129-141.
• Solak, M., Bağcı, H., Şengil, A.Z., Öztaş, S., 2000.Moleküler Genetik ve Rekombinant DNA Teknolojisi (Temel Bilgiler). Afyon Kocatepe Üniversitesi, Eğitim Sağlık ve Bilimsel Araştırmalar Vakfı, Yayın No:5, Afyon.
• Steinborn, R., Müler, M. and Brem, G., 1998. Genetic variation in functionally important domains of the bovine mtDNA control region. Biochimica et Biophysica Acta. (1397): 295-304.
• Sultana S., Manen, H., Tsuji, S., 2003. mitochondrial DNA diversity and Pakistani goats. International Society for Animal Genetics, Anim. Genet. (34): 417-421.
• Sun, Y.L., Lin, C.S., 2003. Establishment and application of a fluorescent polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method for identifying porcine, caprine, and bovine meats. Journal of Agricultural and Food Chemistry, 51 (7): 1771-1776.
• Sutarno, Cummins, J.M., Greeff, J., Lymbery, A.J., 2002. Mitochondrial DNA polymorphisms and fertility in beef cattle. Theriogenology (57):1603-10.
• Tapio, M., Marzanov, N., Ozerov, M., Cinkulov, M., Gonzarenko, G., Kiselyova, T., Murawski, M., Viinalass H., Kantanen, J., 2006. Sheep Mitochondrial DNA Variation in European, Caucasian, and Central Asian Areas, 23(9):1776-1783.
• Troy, C.S., MacHugh, D.E., Balley, J.F., Magee, D.A., Loftus, T.R., Cunningham, P., Chamberlain, A.T., Sykes, B.C., Bradley, D. G., 2001. Genetic evidance for Near-Eastern origins of European cattle. Nature (410): 1088-1091.
• Tsuji S., Mannen H. Mukai F. Shojo M. Oyama K. Kojima T. Kano C. Kinoshita Y., Yamaguchi E., 2004. Trace of native cattle in Japanese Holstein assessed by Mitochondrial DNA sequence polymorphism. J.Dairy Sci. (87):3071-3075.
• Uphold, W.B., Dawid, I.B., 1977. Mapping of mitochondrial DNA of individual sheep and goats: Rapid evolution in the D-loop region. Cell, (11):571-583.
• Ursing, B.M., Arnason, U., 1998. Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade. Proc. Royal Soc. London Seriees B-Biolocical Sci. 265 (1412): 2251-2255.
• Van-Vleck, L.D., Snowder, G.D., Hanford, K.J., 2003. Models with cytoplasmic effecets for birth, weaning, and fleece weights, and litter size at birth for a population of Targhee sheep. J. Anim. Sci. (81):61-67.
• Wallace, D.C., 1994. Mitochondrial DNA mutations in diseases of energy metabolism. J.Bioenerg Biomembr (26):241-250.
• Wallace, D.C., 1995. Mitochondrial DNA variations in human evolution and disease. Proc. Natl. Acad. Sci. USA. 91:8739- 8746.
• Zhang, Y.P., Shi, L.M., 1992. Mitochondrial DNA polymorphisms in animals: a review. Zoological Research (13):3, 289-98.
• Zhao, X.B, Li, N., Guo, W., Hu, X., Liu, Z., Gong, G., Wang, A.H., Feng, J., Wu, C.X., 2004. Further evidence for paternal inheritance of mitochondrial DNA in the sheep (Ovis aries). Heredity, 93 (4): 399-403.
• Zhao, X.B., Chu, M.X., Li, N., Wu, C.X., 2001a. Paternal inheritance of mitochondrial DNA in the sheep (Ovine aries). Science in China Serıes C-Life Sciences, 44 (3): 321-326.
• Zhao, XB., Feng, JD., Li, N., Wang, AH., Wu, CX. 2001b. Genetic typing of mitochondrial DNA in sheep (Ovis aries). Progress in Natural Sci. 11 (12): 937-940.