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Phylogenetic relationships and taxonomical positions of two new records Melanoleuca species from Hakkari province, Turkey

Year 2017, Volume: 10 Issue: 3, 85 - 93, 15.04.2017

Abstract

The aim of the current study is to contribute to the knowledge of the genus Melanoleuca in Turkey. Delimitation of species taxonomic position within the genus is invaluable to protect the genus. Therefore, both morphological and molecular characters were used for identification of Melanoleucaspecimens. Samples collected from Hakkâri province of Turkey were studied morphologically based on pileus, lamellae, stipe, spore, basidia and cystidia structures. Then, DNA sequence data of the Internal Transcribed Spacer ITS , the Large Subunit LSU of the nuclear ribosomal RNA rRNA gene complex and Translation Elongation Factor 1-α TEF regions were analysed to figure out phylogenetic positions within the genus. At the end of the study, two new records species of Melanoleuca M. communis and M. dryophila were reported from Hakkâri province. When ITS and LSU regions were analyzed, M. communis placed within subgenus Melanoleuca / section Melanoleuca and M. dryophila placed within subgenus Urticocytis / section Grammopodiae. Considering the lack of information of this genus in Turkey and the fact that no detailed study has been developed before, this work is valuable to the systematics of Melanoleuca and to the taxonomic knowledge of agarics in Turkey

References

  • Antonin, V., Duriska, O., Jancovicova, S., Tomsovsky, M. (2015). Identity of Agaricus brevipes Bull. (Melanoleuca brevipes,Tricholomataceae, Basidiomycota). Mycological Progress, 14, 107.
  • Bas, C., Kuyper, Th.W., Noordeloos, M.E., Vellinga, E.C. (1999). Flora Agaricina Neerlandica. 4th ed. CRC Press. Rotterdam, Netherlands.
  • Bon, M. (1991). Flore mycologiqued’Europe, 2 – Les Tricholomesetressemblants. Revue de Mycologie Mémóire Hors- Série, 2, 163.
  • Breitenbach, J., Kränzlin, F. (1991). Fungi of Switzerland. Verlag Mykologia, 3rd ed. Lucerne, Switzerland.
  • Bresinsky, V.A., Stangl, J. (1977). Beiträgezur Revision M. Britzelmayrs Hymenomycetenaus Südbayern. Zeitsehr.f.Pilzkunde, 43, 145-173.
  • Buczacki, S. (2012). Collins Fungi Guide: The most complete field guide to the mushrooms and toadstools of Britain & Ireland. Harper Collins Publishers, London, UK.
  • Clémençon, H. (2009). Methods for Working with Macrofungi: Laboratory Cultivation and Preparation of Larger Fungi for Light Microscopy. Berchtesgaden: Berchtesgadener Anzeiger.
  • Dähncke, M.R. (2004). 1200 Pilze in Farbfotos. ATVerlag Aarau, Switzerland.
  • Doyle, J.J., Doyle, J.L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19,11-15.
  • Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39,783-791.
  • Garcia, M.S., Blanco, J.C., Matheny, P.B. (2013). Taxonomic revision of the genus Melanoleuca in Mexico and description of new species. Revista Mexicana de Biodiversidad, 111-127.
  • Gerault, A. (2005). Florule Evolutive des Basidiomycotina Du finistere Heterobasidiomycetes Tricholomatales. Version 2.1. France.
  • Geiser, D.M., Jimenez-Gasco, M.M., Kang, S., Makalowska, I., Veeraraghavan, N., Ward, T.J., Zhang, N., Kuldau, G.A., O'donnell, K. (2004). A DNA sequence database for identifying Fusarium. European Journal of Plant Pathology, 110, 473-479.
  • Hinrikson, H.P., Hurst, S.F., Lott, T.J., Warnock, D.W., Morrison, C.J. (2005). Assessment of Ribosomal Large- Subunit D1-D2, Internal Transcribed Spacer 1, and Internal Transcribed Spacer 2 Regions as Targets for Molecular Identification of Medically Important Aspergillus Species. Journal of Clinical Microbiology, 43, 2092-2103.
  • Jordan, M. (2004). The Encyclopedia of Fungi of Britain and Europe. Frances Lincoln Publishers P. 51. UK.
  • Kumar, R.R., Tapwal, A., Pandey, S., Borah, R.K., Borah, D., Borgohain, J. (2013). Macro-fungal diversity and nutrient content of some edible mushrooms of Nagaland, India. Nusantara Bioscience, 5, 1-7.
  • Kornerup, A., Wanscher, J.H. (1978). Methuen Handbook of Colour. Methuen publishing. 3rd ed. London.
  • Kuo, M., Methven, S.A. (2014). Mushrooms of the Midwest. University of Illinois Press. Urbana, Chicago and Springfield.
  • Murrill, W.A. (1913). The Agaricaceae of the Pacific Coast - IV. New species of Clitocybe and Melanoleuca. Mycologia, 5, 206-223.
  • Mycobank database. (2017). Melanoleuca. http://www.mycobank.org/, Westerdijk Fungal Biodiversity Institue, München, Germany. (Accessed: 10.05.2017)
  • Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., Chen, W. (2012). Fungal Barcoding Consortium Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. PNAS, 109, 6241–6246.
  • Sesli, E., Denchev, C.M. (2014). Checklists of the myxomycetes, larger ascomycetes, and larger basidiomycetes in Turkey. Mycotaxon Checklists Online, 1–136.
  • Solak, M.H., Işıloğlu, M., Erbil, K., Allı, H. (2015). Macrofungi of Turkey Checklist. 2nd ed. Üniversiteliler Ofset, İzmir.
  • Stielow, J.B., Lévesque, C.A., Seifert, K.A., Meyer, W., Irinyi, L., Smits, D., Renfurm, R., Verkley, G.J.M., Groenewald, M., Chaduli, D. (2015). One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. Persoonia, 35, 242–263.
  • Tamura, K., Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., M., Kumar, S. (2013). MEGA 6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology Evolution, 30(12), 2725–2729.
  • Thompson, J.D., Higgins, D.G., Gibson, T.J., (1994). Clustal W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680.
  • Vesterholt, J., Knudsen, H. (2008). Funga Nordica-Agaricoid, boletoid and cyphelloid genera. Nordsvamp, Copenhagen.
  • Vizzini, A., Para, R., Fontenla, R., Ghignone, S., Ercole, E. (2011). A preliminary ITS phylogeny of Melanoleuca (Agaricales) with special reference to European taxa. Mycotaxon, 118, 361-381.
  • Wen, J., Zimmer, E.A. (1996). Phylogeny and Biogeography of Panax L. (the Ginseng Genus, Araliaceae): Inferences from ITS Sequences of Nuclear Ribosomal DNA. Molecular Phylogenetics and Evolution, 6, 167–177.
  • Yu, X.D., Lv, S.X., Ma, D., Li, F.F., Lin, Y., Zhang, L. (2014). Two new species of Melanoleuca (Agaricales, Basidiomycota) from northeastern China, supported by morphological and molecular data. Mycoscience, 55, 456- 461.

Türkiye, Hakkari ilinde bulunan üç yeni kayıt Melanoleuca türünün filogenetik ilişkileri ve taksonomik pozisyonları

Year 2017, Volume: 10 Issue: 3, 85 - 93, 15.04.2017

Abstract

Çalışmamızın amacı Türkiye'de bulunan Melanoleuca cinsine ait literatür bilgisine katkıda bulunmaktır. Cins içindeki türlerin taksonomik konumlarının belirlenmesi, cinsi korumak için çok önemlidir. Bu nedenle toplanan Melanoleuca örneklerinin tanımlanması için hem morfolojik hemde moleküler karakterler kullanılmıştır. Hakkâri ilinden toplanan örnekler, şapka, lamel, spor, bazidya ve sistidya gibi yapılar kullanılarak morfolojik tanımlamaları yapılmıştır. Daha sonra, Transkribe Edilen Aralayıcı Bölgeler ITS , Büyük Altünite LSU ve Translasyon Uzama Faktörü 1-α TEF bölgelerinin DNA dizi verileri türlerin filogenetik konumlarını cins içinde anlamak için analiz edilmiştir. Çalışmanın sonunda Hakkâri ilinden iki yeni Melanoleuca türü M. communis ve M.dryophila rapor edilmiştir. ITS ve LSU bölgeleri analiz edildiğinde, M. communis, alt cins Melanoleuca / seksiyon Melanoleuca'da ve M. dryophila alt cins Urticocytis / seksiyon Grammopodiae’da yer almıştır. Türkiye'de bu cins hakkında yetersiz bilgi olması ve daha önce hiçbir ayrıntılı araştırma yapılmadığı göz önüne alındığında, bu çalışma Melanoleuca'nın sistematiği ve Türkiye'de agariklerin taksonomik bilgisi açısından değerlidir

References

  • Antonin, V., Duriska, O., Jancovicova, S., Tomsovsky, M. (2015). Identity of Agaricus brevipes Bull. (Melanoleuca brevipes,Tricholomataceae, Basidiomycota). Mycological Progress, 14, 107.
  • Bas, C., Kuyper, Th.W., Noordeloos, M.E., Vellinga, E.C. (1999). Flora Agaricina Neerlandica. 4th ed. CRC Press. Rotterdam, Netherlands.
  • Bon, M. (1991). Flore mycologiqued’Europe, 2 – Les Tricholomesetressemblants. Revue de Mycologie Mémóire Hors- Série, 2, 163.
  • Breitenbach, J., Kränzlin, F. (1991). Fungi of Switzerland. Verlag Mykologia, 3rd ed. Lucerne, Switzerland.
  • Bresinsky, V.A., Stangl, J. (1977). Beiträgezur Revision M. Britzelmayrs Hymenomycetenaus Südbayern. Zeitsehr.f.Pilzkunde, 43, 145-173.
  • Buczacki, S. (2012). Collins Fungi Guide: The most complete field guide to the mushrooms and toadstools of Britain & Ireland. Harper Collins Publishers, London, UK.
  • Clémençon, H. (2009). Methods for Working with Macrofungi: Laboratory Cultivation and Preparation of Larger Fungi for Light Microscopy. Berchtesgaden: Berchtesgadener Anzeiger.
  • Dähncke, M.R. (2004). 1200 Pilze in Farbfotos. ATVerlag Aarau, Switzerland.
  • Doyle, J.J., Doyle, J.L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19,11-15.
  • Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39,783-791.
  • Garcia, M.S., Blanco, J.C., Matheny, P.B. (2013). Taxonomic revision of the genus Melanoleuca in Mexico and description of new species. Revista Mexicana de Biodiversidad, 111-127.
  • Gerault, A. (2005). Florule Evolutive des Basidiomycotina Du finistere Heterobasidiomycetes Tricholomatales. Version 2.1. France.
  • Geiser, D.M., Jimenez-Gasco, M.M., Kang, S., Makalowska, I., Veeraraghavan, N., Ward, T.J., Zhang, N., Kuldau, G.A., O'donnell, K. (2004). A DNA sequence database for identifying Fusarium. European Journal of Plant Pathology, 110, 473-479.
  • Hinrikson, H.P., Hurst, S.F., Lott, T.J., Warnock, D.W., Morrison, C.J. (2005). Assessment of Ribosomal Large- Subunit D1-D2, Internal Transcribed Spacer 1, and Internal Transcribed Spacer 2 Regions as Targets for Molecular Identification of Medically Important Aspergillus Species. Journal of Clinical Microbiology, 43, 2092-2103.
  • Jordan, M. (2004). The Encyclopedia of Fungi of Britain and Europe. Frances Lincoln Publishers P. 51. UK.
  • Kumar, R.R., Tapwal, A., Pandey, S., Borah, R.K., Borah, D., Borgohain, J. (2013). Macro-fungal diversity and nutrient content of some edible mushrooms of Nagaland, India. Nusantara Bioscience, 5, 1-7.
  • Kornerup, A., Wanscher, J.H. (1978). Methuen Handbook of Colour. Methuen publishing. 3rd ed. London.
  • Kuo, M., Methven, S.A. (2014). Mushrooms of the Midwest. University of Illinois Press. Urbana, Chicago and Springfield.
  • Murrill, W.A. (1913). The Agaricaceae of the Pacific Coast - IV. New species of Clitocybe and Melanoleuca. Mycologia, 5, 206-223.
  • Mycobank database. (2017). Melanoleuca. http://www.mycobank.org/, Westerdijk Fungal Biodiversity Institue, München, Germany. (Accessed: 10.05.2017)
  • Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., Chen, W. (2012). Fungal Barcoding Consortium Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. PNAS, 109, 6241–6246.
  • Sesli, E., Denchev, C.M. (2014). Checklists of the myxomycetes, larger ascomycetes, and larger basidiomycetes in Turkey. Mycotaxon Checklists Online, 1–136.
  • Solak, M.H., Işıloğlu, M., Erbil, K., Allı, H. (2015). Macrofungi of Turkey Checklist. 2nd ed. Üniversiteliler Ofset, İzmir.
  • Stielow, J.B., Lévesque, C.A., Seifert, K.A., Meyer, W., Irinyi, L., Smits, D., Renfurm, R., Verkley, G.J.M., Groenewald, M., Chaduli, D. (2015). One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. Persoonia, 35, 242–263.
  • Tamura, K., Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., M., Kumar, S. (2013). MEGA 6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology Evolution, 30(12), 2725–2729.
  • Thompson, J.D., Higgins, D.G., Gibson, T.J., (1994). Clustal W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680.
  • Vesterholt, J., Knudsen, H. (2008). Funga Nordica-Agaricoid, boletoid and cyphelloid genera. Nordsvamp, Copenhagen.
  • Vizzini, A., Para, R., Fontenla, R., Ghignone, S., Ercole, E. (2011). A preliminary ITS phylogeny of Melanoleuca (Agaricales) with special reference to European taxa. Mycotaxon, 118, 361-381.
  • Wen, J., Zimmer, E.A. (1996). Phylogeny and Biogeography of Panax L. (the Ginseng Genus, Araliaceae): Inferences from ITS Sequences of Nuclear Ribosomal DNA. Molecular Phylogenetics and Evolution, 6, 167–177.
  • Yu, X.D., Lv, S.X., Ma, D., Li, F.F., Lin, Y., Zhang, L. (2014). Two new species of Melanoleuca (Agaricales, Basidiomycota) from northeastern China, supported by morphological and molecular data. Mycoscience, 55, 456- 461.
There are 31 citations in total.

Details

Primary Language Turkish
Journal Section Research Article
Authors

İsmail Acar This is me

Ayten Dizkırıcı Tekpınar L This is me

Ayşenur Kalmer This is me

Yusuf Uzun This is me

Publication Date April 15, 2017
Published in Issue Year 2017 Volume: 10 Issue: 3

Cite

APA Acar, İ., Dizkırıcı Tekpınar L, A., Kalmer, A., Uzun, Y. (2017). Türkiye, Hakkari ilinde bulunan üç yeni kayıt Melanoleuca türünün filogenetik ilişkileri ve taksonomik pozisyonları. Biological Diversity and Conservation, 10(3), 85-93.

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❖ Biological Diversity and Conservation/ Biyolojik Çeşitlilik ve Koruma
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