BibTex RIS Cite

Türkiye için endemik bir türün çekirdek DNA miktarı: Silene sangaria

Year 2013, Volume: 6 Issue: 1, 88 - 92, 15.04.2013

Abstract

Türkiye florası için endemik bir tür olan Silene sangaria Coode & Cullen ‘nın çekirdek DNA miktarı flov sitometri yöntemiyle analiz edildi. Bitkiler doğal ortamlarından toplandı ve saksılara ekilerek büyüme kabinine yerleştirildi. Flow sitometri analizi için, genç yapraklar buz üzerinde, bir petri içinde propidium iodid ilaveli MgSO4tamponu içinde parçalandı. Propidium iodid ile boyanan çekirdekler EPICS XL Beckmann Coulter model flov sitometri ile analiz edildi. Silene sangaria’ nın çekirdek DNA miktarı 2C-değeri 4.76 ± 0.20 pg olarak hesaplandı. Türün somatik kromozom sayısı klasik karyolojik metodları kullanılarak belirlendi ve 2n = 4x = 48 olarak sayıldı. Bu çalışmanın angiosperm taksonlarının çekirdek DNA miktarı bilgilerine katkı sağladığı düşünülmektedir

References

  • Bennett, M.D., Bhandol, P., Leitch, I.J. 2000. Nuclear DNA amounts in angiosperms and their modern uses-807 new estimates. Annals of Botany, 86: 859-909.
  • Bennett, M.D., Leitch, I.J. 2004. Angiosperm DNA C-values database (release 5.0, Dec. 2004). http://www.rbgkew.org.uk/cval/homepage.html.
  • Bennett, M.D., Leitch, I.J. 2005. Nuclear DNA amounts in angiosperms: Progress, problems and prospects. Annals of Botany, 95: 45-90.
  • Coode, M.J.E., Cullen, J. 1967. Silene L. – In: Davis, P.H. (ed.), Flora of Turkey and the East Aegean Islands. Vol 2, pp. 179-242. Edinburgh Univ. Press, Edinburgh.
  • Council of Europe. 1979. Convention on the conservation of European wildlife and natural habitats, Bern, Switzerland. http://conventions.coe.int/Treaty/FR/Treaties /Html/104-1.htm.
  • Davis, P.H., Mill, R.R.,Tan, K (eds.). 1988. Silene L. – Flora of Turkey and the East Aegean Islands. Vol. 10, pp. 76-81. Supplement. Edinburgh Univ. Press, Edinburgh.
  • Deniz, I.G., Dusen, O.D. 2004. Silene sumbuliana (Caryophyllaceae), a new species from SW Anatolia, Turkey. Annales Botanici Fennici, 41: 293-296.
  • Dolezel, J., Bartos, J. 2005. Plant DNA flow cytometry and estimation of nuclear genome size. Annals of Botany, 95: 99-110.
  • Duran, A., Menemen, Y. 2003. A new species of Silene (Caryophyllaceae) from South Anatolia, Turkey. Botanical Journal of the Linnean Society, 143: 109-113.
  • Ekim, T., Koyuncu, M., Vural, M., Duman, H., Aytac, Z., Adiguzel, N. 2000. Red Data Book of Turkish Plants (Pteridophyta and Spermatophyta). Turkish Association for the Conservation of Nature – Van Centennial Univ. Barıscan Ofset, Ankara (in Turkish).
  • Greilhuber, J., Dolezel, J., Lysak, M.A., Bennett, M.D. 2005. The origin, evolution and proposed stabilization of the terms “genome size” and “c-value” to describe nuclear DNA contents. Annals of Botany, 95: 255-260.
  • Halkka, L., 1985. Chromosome counts of Finnish vascular plants. Annales Botanici Fennici, 22: 315-317.
  • IPCN, 2012. Index to Plant Chromosome Numbers. http://www.tropicos.org/Project/IPCN.
  • Leitch, I.J., Chase, M.W., Bennett, M.D. 1998. Phylogenetic analysis of DNA C-values provides evidence for a small ancestral genome size in flowering plants. Annals of Botany, 82: 85-94.
  • Löve, A., Löve, D. 1982. In: IOPB chromosome number reports LXXIV. Taxon, 31: 120-126.
  • Petrova, A., 1995. Mediterranean chromosome number reports 5: 415-434. – In: Kamari, G., F. Felber and F. Garbari, F. (eds). Flora Mediterranea 5: 279-288.
  • Siljak-Yakovlev, S., Solic, M.E., Catrice, O., Brown S.C., Papes, D. 2005. Nuclear DNA content and chromosome number in some diploid and tetraploid Centaurea (Asteraceae: Cardueae) from the Dalmatia region. Plant Biology, 7: 397-404.
  • Siroky, J., Hodurkova, J., Negrutiu, I., Vyskot, B. 1999. Functional and structural chromosome analyses in autotetraploid Silene latifolia. Annals of Botany, 84: 633-638.
  • Siroky, J., Lysak, M.A., Dolezel, J., Kejnovsky, E., Vyskot, B. 2001. Heterogeneity of rDNA distribution and genome size in Silene spp. Chromosome Research, 9: 387-393.
  • Soltis, D.E., Soltis, P.S., Bennett, M.D., Leitch, I.J. 2003. Evolution of genome size in the angiosperms. American Journal of Botany, 90: 1596-1603.
  • Suda, J., Kyncl, T., Freiova, R. 2003. Nuclear DNA amounts in Macaronesian angiosperms. Annals of Botany, 92: 153-164.
  • Swift, H. 1950. The constancy of desoxyribose nucleic acid in plant nuclei. Proceedings of the National Academy of Sciences (USA), 36: 643-654.
  • Tan, K., Vural, M. 2000. Silene L. – In: Guner et al. (eds). Flora of Turkey and the East Aegean Islands. Vol. 11, pp. 50-53. Supplement. Edinburgh Univ. Press. Edinburgh.
  • Tuna, M., Vogel, K.P., Arumuganathan, K., Gill, K. 2001. DNA content and ploidy determination of bromegrass germplasm accessions by flow cytometry. Crop Science, 41: 1629-1634.
  • Yildiz K. 1994. Kuzeybatı Anadolu’nun Silene L. türleri üzerinde taksonomik ve karyolojik araştırmalar. PhD. Marmara University, Institute of Sciences. Istanbul (in Turkish with an English abstract).
  • Yildiz, K., Çirpici, A.1996. Karyological studies on the species of Silene L. of Northwest Anatolia. Turkish Journal of Botany, 20: 73-82. (in Turkish with an English abstract).

Nuclear DNA content of an endemic species for Turkey: Silene sangaria

Year 2013, Volume: 6 Issue: 1, 88 - 92, 15.04.2013

Abstract

The nuclear DNA content of Silene sangaria Coode & Cullen, an endemic species for Turkey, was determined by flow cytometrical analyses techniques. The plant samples were collected from their natural habitats. They transferred into pots and placed in the growth chamber. For flow cytometry analysis, young leaves were chopped in an MgSO4buffer with propidium iodide on ice in a petri dish. Nuclei, which were stained with propidium iodide, were analyzed on an EPICS XL model flow cytometer. The nuclear DNA content 2C-value of S. sangaria was found to be 4.76 ± 0.20 pg. The somatic chromosome number of the species was determined using conventional karyological methods and counted as 2n = 4x = 48. This study contributes to the data on the nuclear DNA content of angiosperm taxa

References

  • Bennett, M.D., Bhandol, P., Leitch, I.J. 2000. Nuclear DNA amounts in angiosperms and their modern uses-807 new estimates. Annals of Botany, 86: 859-909.
  • Bennett, M.D., Leitch, I.J. 2004. Angiosperm DNA C-values database (release 5.0, Dec. 2004). http://www.rbgkew.org.uk/cval/homepage.html.
  • Bennett, M.D., Leitch, I.J. 2005. Nuclear DNA amounts in angiosperms: Progress, problems and prospects. Annals of Botany, 95: 45-90.
  • Coode, M.J.E., Cullen, J. 1967. Silene L. – In: Davis, P.H. (ed.), Flora of Turkey and the East Aegean Islands. Vol 2, pp. 179-242. Edinburgh Univ. Press, Edinburgh.
  • Council of Europe. 1979. Convention on the conservation of European wildlife and natural habitats, Bern, Switzerland. http://conventions.coe.int/Treaty/FR/Treaties /Html/104-1.htm.
  • Davis, P.H., Mill, R.R.,Tan, K (eds.). 1988. Silene L. – Flora of Turkey and the East Aegean Islands. Vol. 10, pp. 76-81. Supplement. Edinburgh Univ. Press, Edinburgh.
  • Deniz, I.G., Dusen, O.D. 2004. Silene sumbuliana (Caryophyllaceae), a new species from SW Anatolia, Turkey. Annales Botanici Fennici, 41: 293-296.
  • Dolezel, J., Bartos, J. 2005. Plant DNA flow cytometry and estimation of nuclear genome size. Annals of Botany, 95: 99-110.
  • Duran, A., Menemen, Y. 2003. A new species of Silene (Caryophyllaceae) from South Anatolia, Turkey. Botanical Journal of the Linnean Society, 143: 109-113.
  • Ekim, T., Koyuncu, M., Vural, M., Duman, H., Aytac, Z., Adiguzel, N. 2000. Red Data Book of Turkish Plants (Pteridophyta and Spermatophyta). Turkish Association for the Conservation of Nature – Van Centennial Univ. Barıscan Ofset, Ankara (in Turkish).
  • Greilhuber, J., Dolezel, J., Lysak, M.A., Bennett, M.D. 2005. The origin, evolution and proposed stabilization of the terms “genome size” and “c-value” to describe nuclear DNA contents. Annals of Botany, 95: 255-260.
  • Halkka, L., 1985. Chromosome counts of Finnish vascular plants. Annales Botanici Fennici, 22: 315-317.
  • IPCN, 2012. Index to Plant Chromosome Numbers. http://www.tropicos.org/Project/IPCN.
  • Leitch, I.J., Chase, M.W., Bennett, M.D. 1998. Phylogenetic analysis of DNA C-values provides evidence for a small ancestral genome size in flowering plants. Annals of Botany, 82: 85-94.
  • Löve, A., Löve, D. 1982. In: IOPB chromosome number reports LXXIV. Taxon, 31: 120-126.
  • Petrova, A., 1995. Mediterranean chromosome number reports 5: 415-434. – In: Kamari, G., F. Felber and F. Garbari, F. (eds). Flora Mediterranea 5: 279-288.
  • Siljak-Yakovlev, S., Solic, M.E., Catrice, O., Brown S.C., Papes, D. 2005. Nuclear DNA content and chromosome number in some diploid and tetraploid Centaurea (Asteraceae: Cardueae) from the Dalmatia region. Plant Biology, 7: 397-404.
  • Siroky, J., Hodurkova, J., Negrutiu, I., Vyskot, B. 1999. Functional and structural chromosome analyses in autotetraploid Silene latifolia. Annals of Botany, 84: 633-638.
  • Siroky, J., Lysak, M.A., Dolezel, J., Kejnovsky, E., Vyskot, B. 2001. Heterogeneity of rDNA distribution and genome size in Silene spp. Chromosome Research, 9: 387-393.
  • Soltis, D.E., Soltis, P.S., Bennett, M.D., Leitch, I.J. 2003. Evolution of genome size in the angiosperms. American Journal of Botany, 90: 1596-1603.
  • Suda, J., Kyncl, T., Freiova, R. 2003. Nuclear DNA amounts in Macaronesian angiosperms. Annals of Botany, 92: 153-164.
  • Swift, H. 1950. The constancy of desoxyribose nucleic acid in plant nuclei. Proceedings of the National Academy of Sciences (USA), 36: 643-654.
  • Tan, K., Vural, M. 2000. Silene L. – In: Guner et al. (eds). Flora of Turkey and the East Aegean Islands. Vol. 11, pp. 50-53. Supplement. Edinburgh Univ. Press. Edinburgh.
  • Tuna, M., Vogel, K.P., Arumuganathan, K., Gill, K. 2001. DNA content and ploidy determination of bromegrass germplasm accessions by flow cytometry. Crop Science, 41: 1629-1634.
  • Yildiz K. 1994. Kuzeybatı Anadolu’nun Silene L. türleri üzerinde taksonomik ve karyolojik araştırmalar. PhD. Marmara University, Institute of Sciences. Istanbul (in Turkish with an English abstract).
  • Yildiz, K., Çirpici, A.1996. Karyological studies on the species of Silene L. of Northwest Anatolia. Turkish Journal of Botany, 20: 73-82. (in Turkish with an English abstract).
There are 26 citations in total.

Details

Primary Language Turkish
Journal Section Research Article
Authors

Çiler Meriç This is me

Necmettin Güler This is me

Publication Date April 15, 2013
Published in Issue Year 2013 Volume: 6 Issue: 1

Cite

APA Meriç, Ç., & Güler, N. (2013). Türkiye için endemik bir türün çekirdek DNA miktarı: Silene sangaria. Biological Diversity and Conservation, 6(1), 88-92.

❖  Abstracted-Indexed in
Web of Science {Zoological Records Indexed] Clavariate Analytic, Medical Reads (RRS), CrossRef;10.46309/biodicon.

❖ Libraries
Aberystwyth University; All libraries; Bath University; Birmingham University; Cardiff University; City University London; CONSER (Not UK Holdings); Edinburgh University; Essex University; Exeter University; Eskişehir Technical University Library; EZB Electronic Journals Library; Feng Chia University Library; GAZİ Gazi University Library; Glasgow University; HEC-National Digital Library; Hull University; Imperial College London; Kaohsinug Medical University Library; ANKOS; Anadolu University Library; Lancaster University; Libros PDF; Liverpool University; London Metropolitan University; London School of Economics and Political Science; Manchester University; National Cheng Kung University Library; National ILAN University Library; Nottingham University; Open University; Oxford University; Queen Mary,University of London;Robert Gordon University; Royal Botanic Gardens, Kew; Sheffield Hallam University; Sheffield University; Shih Hsin University Library; Smithsonian Institution Libraries; Southampton University; Stirling University; Strathclyde University; Sussex University; The National Agricultural Library (NAL); The Ohio Library and Information NetWork; Trinity College Dublin; University of Washington Libraries; Vaughan Memorial Library; York University..

❖ The article processing is free.

❖ Web of Science-Clarivate Analytics, Zoological Record
❖ This journal is a CrossRef;10.46309/biodicon. member

❖ Please visit ” http:// www.biodicon.com“ ; "https://dergipark.org.tr/en/pub/biodicon"   for instructions about articles and all of the details about journal


❖  Correspondance Adres: Prof. Ersin YÜCEL, Sazova Mahallesi, Ziraat Caddesi, No.277 F Blok, 26005 Tepebaşı-Eskişehir/Türkiye
E-posta / E-mail: biodicon@gmail.com;
Web Address: http://www.biodicon.com;   https://dergipark.org.tr/en/pub/biodicon
❖ Biological Diversity and Conservation/ Biyolojik Çeşitlilik ve Koruma
❖ ISSN 1308-5301 Print; ISSN 1308-8084 Online
❖ Start Date Published 2008
© Copyright by Biological Diversity and Conservation/Biyolojik Çeşitlilik ve Koruma-Available online at www.biodicon.com/All rights reserved
Publisher : ERSİN YÜCEL (https://www.ersinyucel.com.tr/)
❖ This journal is published three numbers in a year. Printed in Eskişehir/Türkiye.
❖ All sorts of responsibilities of the articles published in this journal are belonging to the authors
Editör / Editor-In-Chief : Prof.Dr. Ersin YÜCEL, https://orcid.org/0000-0001-8274-7578